Wall clock time and date at job start Wed Apr 1 2020 03:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28054 * 124.24403 * 2 1 4 4 C 1.34413 * 117.91624 * 180.02562 * 3 2 1 5 5 C 1.41246 * 129.48561 * 179.97438 * 4 3 2 6 6 C 1.35750 * 120.63711 * 179.97438 * 5 4 3 7 7 C 1.40199 * 120.61680 * 0.04701 * 6 5 4 8 8 C 1.47588 * 120.12667 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99728 * 8.02208 * 8 7 6 10 10 N 1.34772 * 119.99711 * 188.01966 * 8 7 6 11 11 C 1.47018 * 125.65131 * 354.58868 * 10 8 7 12 12 C 1.54324 * 107.27086 * 178.97274 * 11 10 8 13 13 H 1.09004 * 110.71877 * 96.34878 * 12 11 10 14 14 N 1.46500 * 110.72545 * 219.44357 * 12 11 10 15 15 C 1.36936 * 119.99714 * 273.55304 * 14 12 11 16 16 H 1.07996 * 120.00476 * 359.97438 * 15 14 12 17 17 C 1.38821 * 119.99450 * 179.97438 * 15 14 12 18 18 N 1.31625 * 119.99571 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00032 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46940 * 90.00158 * 19 17 15 21 21 H 1.48497 * 109.47022 * 209.99630 * 19 17 15 22 22 H 1.48499 * 109.47317 * 330.00120 * 19 17 15 23 23 C 1.55160 * 102.94554 * 337.81232 * 12 11 10 24 24 C 1.47426 * 125.64412 * 174.62872 * 10 8 7 25 25 H 1.09005 * 110.36566 * 85.14679 * 24 10 8 26 26 C 1.52998 * 110.36908 * 322.93613 * 24 10 8 27 27 C 1.39176 * 119.74320 * 0.22850 * 7 6 5 28 28 C 1.38910 * 119.85169 * 359.47627 * 27 7 6 29 29 S 1.70651 * 124.23801 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47054 * 89.97110 * 1 2 3 31 31 H 1.08997 * 109.46911 * 209.97698 * 1 2 3 32 32 H 1.09001 * 109.46621 * 329.97366 * 1 2 3 33 33 H 1.08003 * 119.68027 * 0.02562 * 5 4 3 34 34 H 1.07997 * 119.68973 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.88233 * 59.55970 * 11 10 8 36 36 H 1.08993 * 110.01227 * 298.46347 * 11 10 8 37 37 H 0.96999 * 119.99782 * 93.54759 * 14 12 11 38 38 H 0.96999 * 119.99615 * 179.97438 * 18 17 15 39 39 H 1.08993 * 111.00455 * 153.57461 * 23 12 11 40 40 H 1.08994 * 110.99997 * 277.42359 * 23 12 11 41 41 H 1.08996 * 109.47422 * 61.45346 * 26 24 10 42 42 H 1.09000 * 109.47010 * 181.45346 * 26 24 10 43 43 H 1.09006 * 109.46923 * 301.44902 * 26 24 10 44 44 H 1.08002 * 120.07277 * 179.72342 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5636 0.9104 -0.0005 5 6 4.5764 1.8949 -0.0011 6 6 5.8866 1.5395 -0.0011 7 6 6.2598 0.1881 -0.0014 8 6 7.6875 -0.1860 -0.0020 9 8 8.5399 0.6684 0.1448 10 7 8.0462 -1.4749 -0.1651 11 6 7.1247 -2.6179 -0.2399 12 6 7.9811 -3.8836 -0.4552 13 1 8.1725 -4.3856 0.4932 14 7 7.3309 -4.7950 -1.4000 15 6 6.4115 -5.7051 -0.9508 16 1 6.1661 -5.7513 0.0999 17 6 5.7950 -6.5685 -1.8462 18 7 4.9117 -7.4436 -1.4144 19 14 6.2190 -6.4881 -3.6636 20 1 7.3544 -7.4022 -3.9479 21 1 5.0391 -6.9001 -4.4658 22 1 6.6005 -5.0985 -4.0220 23 6 9.2948 -3.3164 -1.0552 24 6 9.4278 -1.9720 -0.2973 25 1 9.8694 -2.1313 0.6865 26 6 10.2734 -0.9861 -1.1060 27 6 5.2789 -0.7991 -0.0066 28 6 3.9369 -0.4405 -0.0004 29 16 2.4672 -1.4108 -0.0006 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3632 0.8898 0.5143 33 1 4.3059 2.9405 -0.0008 34 1 6.6484 2.3049 -0.0012 35 1 6.4393 -2.4874 -1.0774 36 1 6.5619 -2.7048 0.6894 37 1 7.5515 -4.7538 -2.3436 38 1 4.4807 -8.0466 -2.0401 39 1 10.1381 -3.9721 -0.8389 40 1 9.1951 -3.1519 -2.1281 41 1 10.3113 -0.0287 -0.5866 42 1 11.2838 -1.3797 -1.2167 43 1 9.8275 -0.8478 -2.0910 44 1 5.5604 -1.8418 -0.0114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989643095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:55 Heat of formation + Delta-G solvation = 46.794689 kcal Electronic energy + Delta-G solvation = -27750.623243 eV Core-core repulsion = 23988.036888 eV Total energy + Delta-G solvation = -3762.586355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.03515 -41.03287 -38.99253 -37.89573 -36.11201 -33.88246 -33.48020 -32.60048 -31.72012 -30.61356 -29.42205 -27.13011 -25.83623 -25.34376 -24.19774 -23.20211 -22.08648 -21.79129 -20.75263 -19.66581 -19.27692 -18.41487 -17.83747 -17.15722 -16.60785 -16.47516 -16.38644 -16.18439 -15.71042 -15.46967 -15.26602 -14.97299 -14.67394 -14.48858 -14.40456 -14.04210 -13.93203 -13.76748 -13.60444 -13.38460 -13.16212 -13.09767 -12.97973 -12.90295 -12.49385 -12.39862 -12.18800 -12.02325 -11.84105 -11.68531 -11.60696 -11.32916 -11.05617 -10.86394 -10.70993 -9.89093 -9.66082 -9.37259 -9.30001 -8.01017 -5.36597 -1.01332 -0.01927 0.10053 0.59689 0.80662 1.40515 1.41955 1.48787 1.78386 1.83267 2.48917 2.59688 2.76262 3.16731 3.27447 3.40700 3.57268 3.70379 3.76042 3.87790 3.97314 4.06484 4.11474 4.20944 4.26686 4.40466 4.44700 4.54342 4.58783 4.62207 4.65061 4.68706 4.78807 4.83877 4.92819 5.02295 5.06582 5.09350 5.11761 5.25047 5.28149 5.44789 5.52158 5.78547 6.21961 6.36229 6.42587 6.98701 7.07295 7.80738 7.99037 9.19439 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.007865 B = 0.004694 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.217886 B = 5963.843284 C = 9017.473157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.101 3.899 3 N -0.497 5.497 4 C 0.094 3.906 5 C -0.077 4.077 6 C -0.050 4.050 7 C -0.132 4.132 8 C 0.575 3.425 9 O -0.558 6.558 10 N -0.603 5.603 11 C 0.072 3.928 12 C 0.168 3.832 13 H 0.077 0.923 14 N -0.739 5.739 15 C -0.233 4.233 16 H 0.066 0.934 17 C -0.052 4.052 18 N -0.977 5.977 19 Si 0.943 3.057 20 H -0.278 1.278 21 H -0.300 1.300 22 H -0.254 1.254 23 C -0.126 4.126 24 C 0.135 3.865 25 H 0.091 0.909 26 C -0.157 4.157 27 C -0.069 4.069 28 C -0.219 4.219 29 S 0.117 5.883 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.368 0.632 38 H 0.257 0.743 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 16.808 2.089 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.182 4.182 3 N -0.213 5.213 4 C -0.028 4.028 5 C -0.098 4.098 6 C -0.071 4.071 7 C -0.138 4.138 8 C 0.366 3.634 9 O -0.439 6.439 10 N -0.335 5.335 11 C -0.054 4.054 12 C 0.058 3.942 13 H 0.095 0.905 14 N -0.381 5.381 15 C -0.364 4.364 16 H 0.084 0.916 17 C -0.244 4.244 18 N -0.626 5.626 19 Si 0.771 3.229 20 H -0.204 1.204 21 H -0.227 1.227 22 H -0.179 1.179 23 C -0.165 4.165 24 C 0.033 3.967 25 H 0.109 0.891 26 C -0.214 4.214 27 C -0.091 4.091 28 C -0.338 4.338 29 S 0.374 5.626 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.181 0.819 34 H 0.177 0.823 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.202 0.798 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.181 16.599 2.316 16.801 hybrid contribution 0.304 0.128 -1.053 1.104 sum -0.877 16.727 1.262 16.798 Atomic orbital electron populations 1.20841 0.81590 1.06124 1.05911 1.27668 1.03601 0.90237 0.96651 1.66254 1.03876 1.31983 1.19160 1.19740 0.89935 0.91999 1.01109 1.20515 0.89553 0.99440 1.00244 1.20872 0.96316 0.94800 0.95155 1.19892 0.92205 0.94788 1.06947 1.17822 0.88018 0.81079 0.76488 1.90688 1.52025 1.49249 1.51891 1.48506 1.09325 1.05242 1.70431 1.23399 0.93895 0.87091 1.00968 1.21393 0.90790 0.87767 0.94236 0.90518 1.42693 1.49192 1.40140 1.06079 1.19016 1.13994 1.09221 0.94164 0.91629 1.25371 0.99018 0.98190 1.01829 1.69861 1.32346 1.25025 1.35398 0.85595 0.77093 0.78735 0.81447 1.20420 1.22742 1.17851 1.23133 0.98085 0.95051 1.00215 1.22062 0.81202 0.93466 0.99960 0.89146 1.22070 1.00079 0.99985 0.99274 1.22231 0.89463 1.02836 0.94527 1.23989 0.99516 0.97436 1.12871 1.84525 0.95018 1.10003 1.73026 0.87296 0.87666 0.87726 0.81876 0.82282 0.91179 0.90907 0.79793 0.93365 0.87343 0.90492 0.91303 0.89423 0.93524 0.81378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.44 71.24 0.74 -0.37 16 2 C 0.10 2.32 7.29 88.66 0.65 2.97 16 3 N -0.50 -13.41 10.56 -182.19 -1.92 -15.33 16 4 C 0.09 2.68 7.00 39.95 0.28 2.96 16 5 C -0.08 -1.86 10.03 22.43 0.23 -1.64 16 6 C -0.05 -1.25 9.49 22.17 0.21 -1.04 16 7 C -0.13 -3.85 5.87 -20.11 -0.12 -3.96 16 8 C 0.58 17.73 7.52 86.71 0.65 18.38 16 9 O -0.56 -18.67 14.19 -3.99 -0.06 -18.73 16 10 N -0.60 -17.39 3.24 -805.18 -2.61 -20.00 16 11 C 0.07 2.22 4.62 86.73 0.40 2.63 16 12 C 0.17 5.42 3.59 46.18 0.17 5.58 16 13 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 14 N -0.74 -30.32 4.98 -317.32 -1.58 -31.90 16 15 C -0.23 -11.99 10.46 84.04 0.88 -11.11 16 16 H 0.07 3.68 8.06 -2.91 -0.02 3.66 16 17 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 18 N -0.98 -59.04 13.97 21.66 0.30 -58.74 16 19 Si 0.94 42.66 27.73 68.60 1.90 44.56 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.25 -10.35 6.52 99.48 0.65 -9.71 16 23 C -0.13 -3.14 6.11 31.99 0.20 -2.95 16 24 C 0.14 3.33 3.74 45.47 0.17 3.50 16 25 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 26 C -0.16 -3.62 8.77 71.98 0.63 -2.99 16 27 C -0.07 -2.09 8.62 22.66 0.20 -1.90 16 28 C -0.22 -6.59 6.54 22.90 0.15 -6.44 16 29 S 0.12 3.12 23.11 -56.49 -1.31 1.82 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.16 3.50 7.66 -2.91 -0.02 3.48 16 35 H 0.07 2.38 6.53 -2.38 -0.02 2.37 16 36 H 0.07 2.26 6.82 -2.39 -0.02 2.24 16 37 H 0.37 14.70 5.58 -92.71 -0.52 14.19 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.08 1.95 7.92 -2.39 -0.02 1.93 16 41 H 0.07 1.86 5.93 -2.39 -0.01 1.84 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.17 5.28 2.75 -8.08 -0.02 5.26 16 Total: -1.00 -67.97 366.85 1.09 -66.88 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.46 Total: 30.18 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 5.89 Total: 1.25 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.81 Total: -125.96 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.73 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.90 Total: 44.56 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.82 kcal Total: -67.97 1.09 -66.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989643095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.679 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds