Wall clock time and date at job start Wed Apr 1 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48501 * 109.46933 * 240.00360 * 3 2 1 5 5 H 1.48494 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46896 * 120.00577 * 3 2 1 7 7 C 1.38821 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.58065 * 0.02562 * 9 7 2 11 11 C 1.54858 * 104.82211 * 204.66888 * 10 9 7 12 12 C 1.54915 * 101.76866 * 322.93283 * 11 10 9 13 13 N 1.46501 * 112.32999 * 273.78263 * 12 11 10 14 14 C 1.34771 * 120.00404 * 295.64096 * 13 12 11 15 15 O 1.21725 * 120.00140 * 0.02562 * 14 13 12 16 16 C 1.46499 * 120.00059 * 180.02562 * 14 13 12 17 17 C 1.36116 * 125.70714 * 179.71734 * 16 14 13 18 18 C 1.42234 * 107.62311 * 179.84736 * 17 16 14 19 19 C 1.45586 * 140.78007 * 180.02562 * 18 17 16 20 20 C 1.31808 * 114.63298 * 180.38030 * 19 18 17 21 21 S 1.75349 * 111.24839 * 359.97438 * 20 19 18 22 22 C 1.38177 * 106.99249 * 0.41073 * 18 17 16 23 23 N 1.37456 * 108.16984 * 359.75277 * 22 18 17 24 24 H 0.96995 * 125.68673 * 180.02562 * 23 22 18 25 25 C 1.53586 * 109.09116 * 148.11616 * 12 11 10 26 26 C 1.54402 * 106.75093 * 247.06032 * 25 12 11 27 27 C 1.54761 * 104.07426 * 24.70175 * 26 25 12 28 28 C 1.46977 * 125.57702 * 179.97438 * 9 7 2 29 29 H 1.08998 * 111.81485 * 301.92107 * 28 9 7 30 30 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 31 31 H 1.08995 * 110.37426 * 323.51020 * 10 9 7 32 32 H 1.09004 * 110.36777 * 85.72700 * 10 9 7 33 33 H 1.08997 * 110.97182 * 81.05011 * 11 10 9 34 34 H 1.09000 * 110.97176 * 204.77829 * 11 10 9 35 35 H 0.97009 * 119.99599 * 115.64063 * 13 12 11 36 36 H 1.07998 * 126.18881 * 359.96753 * 17 16 14 37 37 H 1.08004 * 122.68183 * 0.40116 * 19 18 17 38 38 H 1.08005 * 124.37469 * 180.02562 * 20 19 18 39 39 H 1.08994 * 110.01917 * 6.22401 * 25 12 11 40 40 H 1.09000 * 110.01627 * 127.57375 * 25 12 11 41 41 H 1.09003 * 110.41899 * 266.11438 * 26 25 12 42 42 H 1.09004 * 110.64966 * 143.39971 * 26 25 12 43 43 H 1.09002 * 110.67220 * 203.89107 * 27 26 25 44 44 H 1.09001 * 110.66738 * 80.92326 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 -0.0005 11 6 -0.4032 -3.9238 0.6243 12 6 0.7720 -4.7540 0.0503 13 7 0.4651 -5.3163 -1.2672 14 6 -0.5202 -6.2264 -1.3986 15 8 -1.1554 -6.5809 -0.4226 16 6 -0.8267 -6.7891 -2.7160 17 6 -1.7888 -7.7150 -2.9801 18 6 -1.7562 -7.9837 -4.3764 19 6 -2.4200 -8.7983 -5.3841 20 6 -1.9524 -8.6481 -6.6073 21 16 -0.6418 -7.4839 -6.6481 22 6 -0.7510 -7.2031 -4.9145 23 7 -0.1839 -6.4734 -3.8970 24 1 0.5459 -5.8416 -3.9925 25 6 1.1755 -5.8269 1.0725 26 6 2.5895 -5.4575 1.5707 27 6 2.6838 -3.9305 1.3371 28 6 1.9331 -3.7264 -0.0016 29 1 2.5871 -3.8736 -0.8611 30 1 -0.4850 0.8401 0.0004 31 1 -0.5987 -1.7507 0.6071 32 1 -0.5262 -2.4924 -1.0196 33 1 -0.3541 -3.8788 1.7122 34 1 -1.3619 -4.3249 0.2954 35 1 0.9711 -5.0335 -2.0451 36 1 -2.4575 -8.1630 -2.2600 37 1 -3.2310 -9.4715 -5.1483 38 1 -2.3285 -9.1736 -7.4727 39 1 0.4765 -5.8272 1.9087 40 1 1.1895 -6.8080 0.5977 41 1 3.3471 -5.9804 0.9870 42 1 2.6962 -5.6887 2.6306 43 1 3.7243 -3.6188 1.2460 44 1 2.1898 -3.3869 2.1423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992073152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:28 Heat of formation + Delta-G solvation = 66.415643 kcal Electronic energy + Delta-G solvation = -28037.271743 eV Core-core repulsion = 24275.536216 eV Total energy + Delta-G solvation = -3761.735527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.44845 -39.99281 -37.98958 -35.51444 -34.32234 -33.54236 -31.50370 -30.59585 -30.00487 -28.54269 -26.76897 -26.06465 -23.89714 -23.49473 -22.85444 -20.78232 -20.14315 -20.02221 -19.44867 -18.97112 -18.78709 -17.09631 -16.77075 -15.82146 -15.35616 -15.14682 -14.94882 -14.85837 -14.43313 -14.34227 -13.92812 -13.59275 -13.55698 -13.30246 -12.91005 -12.81929 -12.23686 -12.03678 -11.95282 -11.79768 -11.70482 -11.21907 -11.04330 -11.01182 -10.87838 -10.71748 -10.57323 -10.25290 -10.16835 -10.04407 -9.88139 -9.70629 -9.64653 -9.53990 -8.73195 -8.68194 -8.44295 -7.83757 -6.91157 -5.69199 -3.12969 0.88565 1.15407 1.29582 1.78799 2.75466 2.95426 3.19662 3.36092 3.40749 3.42259 3.44514 4.42587 4.48746 4.70787 4.80192 4.94596 5.10589 5.24460 5.26863 5.43498 5.47269 5.55583 5.58707 5.75702 5.79639 5.91132 5.94039 6.01418 6.03647 6.08756 6.16434 6.26266 6.31119 6.37804 6.48981 6.54335 6.55708 6.72955 6.73487 6.91246 6.97844 7.04806 7.48694 7.58988 7.63663 7.83032 8.27991 8.32115 9.16403 9.77339 10.41099 11.33138 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.002951 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.818361 B = 9484.803016 C =10626.095705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.152 3.848 11 C -0.141 4.141 12 C 0.162 3.838 13 N -0.702 5.702 14 C 0.586 3.414 15 O -0.519 6.519 16 C 0.000 4.000 17 C -0.074 4.074 18 C -0.163 4.163 19 C -0.069 4.069 20 C -0.225 4.225 21 S 0.129 5.871 22 C -0.010 4.010 23 N -0.524 5.524 24 H 0.421 0.579 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.129 4.129 28 C 0.161 3.839 29 H 0.045 0.955 30 H 0.253 0.747 31 H 0.109 0.891 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.393 0.607 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 -17.363 -9.733 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.319 5.319 10 C 0.027 3.973 11 C -0.181 4.181 12 C 0.076 3.924 13 N -0.351 5.351 14 C 0.372 3.628 15 O -0.395 6.395 16 C -0.113 4.113 17 C -0.101 4.101 18 C -0.176 4.176 19 C -0.099 4.099 20 C -0.358 4.358 21 S 0.382 5.618 22 C -0.239 4.239 23 N -0.127 5.127 24 H 0.260 0.740 25 C -0.149 4.149 26 C -0.163 4.163 27 C -0.170 4.170 28 C 0.053 3.947 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.227 0.773 36 H 0.174 0.826 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.267 -16.679 -10.091 19.496 hybrid contribution 0.210 0.802 0.429 0.934 sum -0.057 -15.877 -9.662 18.586 Atomic orbital electron populations 1.69787 1.04881 1.24919 1.57165 1.24788 0.95675 0.97697 1.02293 0.86175 0.78410 0.83153 0.77861 1.21297 1.21597 1.21131 1.18979 0.90399 0.82286 1.43506 0.90570 1.44522 1.01779 0.99132 1.86509 1.21975 0.84345 0.93021 0.97937 1.23343 0.96591 0.97960 1.00191 1.21684 0.97039 0.92469 0.81219 1.45811 1.35863 1.42358 1.11034 1.16904 0.80385 0.79294 0.86218 1.90858 1.50259 1.60735 1.37632 1.20244 1.00693 1.04788 0.85573 1.20718 0.98566 0.97651 0.93200 1.19383 1.00521 1.03230 0.94464 1.20329 1.00048 0.99026 0.90516 1.24852 1.03362 1.06250 1.01374 1.83938 1.38050 1.44133 0.95664 1.23548 1.02200 1.02447 0.95690 1.41469 1.30882 1.35882 1.04485 0.74024 1.22287 0.96821 0.97556 0.98236 1.22398 0.96299 0.97295 1.00283 1.22961 1.00391 0.93983 0.99617 1.21804 0.91515 0.85920 0.95464 0.93751 0.93639 0.87357 0.97386 0.91135 0.91470 0.77328 0.82559 0.83790 0.81334 0.90935 0.92193 0.92405 0.92076 0.92350 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.07 55.49 0.56 -25.68 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.22 -5.91 10.01 -15.06 -0.15 -6.06 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.60 -14.27 3.03 -161.11 -0.49 -14.75 16 10 C 0.15 3.64 5.90 -2.59 -0.02 3.62 16 11 C -0.14 -2.84 5.75 -24.74 -0.14 -2.98 16 12 C 0.16 2.82 0.74 -129.37 -0.10 2.73 16 13 N -0.70 -10.80 5.24 -46.69 -0.24 -11.04 16 14 C 0.59 9.26 6.95 -12.94 -0.09 9.17 16 15 O -0.52 -9.55 14.72 5.17 0.08 -9.48 16 16 C 0.00 0.00 6.97 -82.47 -0.57 -0.57 16 17 C -0.07 -0.97 10.58 -38.81 -0.41 -1.38 16 18 C -0.16 -1.99 6.80 -105.46 -0.72 -2.70 16 19 C -0.07 -0.65 10.42 -38.55 -0.40 -1.05 16 20 C -0.22 -1.85 11.03 28.84 0.32 -1.53 16 21 S 0.13 1.18 23.24 -107.50 -2.50 -1.32 16 22 C -0.01 -0.12 8.41 -15.05 -0.13 -0.24 16 23 N -0.52 -6.10 6.08 -7.94 -0.05 -6.15 16 24 H 0.42 3.97 8.14 -40.82 -0.33 3.63 16 25 C -0.11 -1.75 5.23 -25.69 -0.13 -1.88 16 26 C -0.12 -1.81 6.85 -25.07 -0.17 -1.98 16 27 C -0.13 -2.27 6.20 -24.84 -0.15 -2.43 16 28 C 0.16 3.11 3.65 -65.57 -0.24 2.87 16 29 H 0.04 0.84 8.02 -51.93 -0.42 0.42 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 31 H 0.11 2.96 5.83 -51.93 -0.30 2.66 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 1.41 7.62 -51.93 -0.40 1.01 16 34 H 0.07 1.37 6.82 -51.93 -0.35 1.02 16 35 H 0.39 5.29 7.59 -40.82 -0.31 4.98 16 36 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.07 1.19 7.37 -51.93 -0.38 0.80 16 40 H 0.06 0.94 7.43 -51.93 -0.39 0.55 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -30.97 364.05 -11.19 -42.16 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.80 Total: 9.00 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.20 Total: -4.76 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.22 Total: -57.63 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.50 Total: -1.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.97 -11.19 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992073152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.576 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds