Wall clock time and date at job start Wed Apr 1 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00149 * 2 1 4 4 H 1.48493 * 109.47107 * 240.00252 * 3 2 1 5 5 H 1.48504 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47535 * 119.99750 * 3 2 1 7 7 C 1.38817 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00014 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.49290 * 127.10104 * 359.97438 * 9 7 2 11 11 C 1.56983 * 106.43761 * 171.66105 * 10 9 7 12 12 C 1.52132 * 100.46508 * 336.09394 * 11 10 9 13 13 N 1.46499 * 111.07913 * 286.47337 * 12 11 10 14 14 C 1.34777 * 120.00195 * 288.29900 * 13 12 11 15 15 O 1.21733 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.46462 * 119.99937 * 180.27538 * 14 13 12 17 17 C 1.37460 * 125.80490 * 179.41570 * 16 14 13 18 18 C 1.40655 * 107.55396 * 179.88438 * 17 16 14 19 19 S 1.76025 * 142.39348 * 180.02562 * 18 17 16 20 20 C 1.75587 * 91.30885 * 180.36435 * 19 18 17 21 21 C 1.32773 * 110.47545 * 0.02562 * 20 19 18 22 22 C 1.38238 * 108.03542 * 0.38310 * 18 17 16 23 23 N 1.37922 * 125.80539 * 359.72967 * 16 14 13 24 24 H 0.96998 * 125.68435 * 359.97438 * 23 16 14 25 25 C 1.51218 * 122.55571 * 151.79825 * 12 11 10 26 26 C 1.55055 * 104.91459 * 219.09732 * 25 12 11 27 27 C 1.56279 * 105.91820 * 6.67042 * 26 25 12 28 28 C 1.42714 * 127.10431 * 179.97438 * 9 7 2 29 29 H 1.09002 * 108.18038 * 103.43372 * 28 9 7 30 30 H 0.96999 * 120.00424 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.04871 * 290.61601 * 10 9 7 32 32 H 1.09002 * 110.05461 * 52.08940 * 10 9 7 33 33 H 1.09004 * 110.94201 * 218.47529 * 11 10 9 34 34 H 1.09004 * 111.67851 * 94.01450 * 11 10 9 35 35 H 0.97000 * 120.00069 * 108.30628 * 13 12 11 36 36 H 1.08000 * 126.22129 * 0.02562 * 17 16 14 37 37 H 1.08003 * 124.76547 * 180.02562 * 20 19 18 38 38 H 1.08002 * 122.16083 * 180.02562 * 21 20 19 39 39 H 1.09000 * 110.41243 * 337.32498 * 25 12 11 40 40 H 1.09005 * 110.41152 * 99.76246 * 25 12 11 41 41 H 1.09007 * 109.84687 * 247.73027 * 26 25 12 42 42 H 1.09000 * 110.54631 * 125.98961 * 26 25 12 43 43 H 1.08999 * 110.97344 * 266.52615 * 27 26 25 44 44 H 1.08999 * 110.96728 * 142.75661 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1558 -2.5727 0.0028 11 6 -0.4126 -4.1060 -0.2147 12 6 0.8799 -4.5068 -0.9099 13 7 0.9065 -4.0228 -2.2924 14 6 0.1131 -4.5925 -3.2211 15 8 -0.6259 -5.5088 -2.9111 16 6 0.1441 -4.1126 -4.6046 17 6 -0.6020 -4.6115 -5.6457 18 6 -0.2741 -3.8709 -6.7957 19 16 -0.6402 -3.7241 -8.5112 20 6 0.5040 -2.4034 -8.6835 21 6 1.0843 -2.1368 -7.5194 22 6 0.6773 -2.9320 -6.4432 23 7 0.9314 -3.0874 -5.0856 24 1 1.5579 -2.5623 -4.5634 25 6 1.4592 -5.9000 -0.8105 26 6 2.9912 -5.6883 -0.6991 27 6 3.2021 -4.1454 -0.5673 28 6 1.8809 -3.7028 0.0018 29 1 1.7924 -4.1092 1.0093 30 1 -0.4851 0.8400 0.0004 31 1 -0.5705 -2.2607 0.9614 32 1 -0.6051 -1.9950 -0.8049 33 1 -1.2743 -4.2688 -0.8621 34 1 -0.5295 -4.6330 0.7323 35 1 1.4952 -3.2925 -2.5394 36 1 -1.3126 -5.4230 -5.5902 37 1 0.7073 -1.8812 -9.6067 38 1 1.8220 -1.3556 -7.4103 39 1 1.0901 -6.4023 0.0837 40 1 1.2134 -6.4784 -1.7012 41 1 3.4824 -6.0591 -1.5988 42 1 3.3848 -6.1978 0.1804 43 1 3.3786 -3.6911 -1.5423 44 1 4.0180 -3.9205 0.1196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992386984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:19 Heat of formation + Delta-G solvation = 76.877775 kcal Electronic energy + Delta-G solvation = -28647.043714 eV Core-core repulsion = 24885.761859 eV Total energy + Delta-G solvation = -3761.281855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.35391 -40.33945 -37.99206 -35.29132 -34.52833 -33.21499 -31.82471 -30.85736 -30.04314 -28.16419 -27.03634 -25.83508 -24.18179 -23.57575 -22.59443 -20.62124 -20.49174 -20.03631 -19.51800 -18.94718 -18.43797 -16.59151 -16.47398 -15.84159 -15.47700 -15.24019 -14.75752 -14.67844 -14.35495 -14.21976 -14.00979 -13.99037 -13.51590 -13.36299 -12.89778 -12.66565 -12.41207 -12.00097 -11.90114 -11.65723 -11.49349 -11.41499 -11.10263 -10.99778 -10.92182 -10.88090 -10.59148 -10.40159 -10.12844 -10.06113 -9.82634 -9.77739 -9.74843 -9.29451 -8.77226 -8.65915 -8.07868 -7.69593 -6.97793 -5.85082 -3.20676 0.76328 1.49267 2.01091 2.01539 2.72674 2.88082 3.28811 3.34900 3.36703 3.45855 3.58773 4.35057 4.53159 4.71842 4.93156 4.96875 5.16145 5.17839 5.30791 5.37835 5.47618 5.51534 5.64857 5.70463 5.73339 5.86561 5.88245 5.94398 5.94645 6.07921 6.15396 6.21934 6.30517 6.35625 6.41093 6.45328 6.55787 6.66054 6.73475 6.81393 7.05799 7.29584 7.42701 7.50100 7.67658 7.87239 8.08968 8.47265 9.02377 9.68803 10.37925 11.26640 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.003987 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.629941 B = 7021.033484 C = 8732.381998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.585 5.585 10 C 0.178 3.822 11 C -0.140 4.140 12 C 0.133 3.867 13 N -0.685 5.685 14 C 0.584 3.416 15 O -0.530 6.530 16 C 0.022 3.978 17 C -0.082 4.082 18 C -0.216 4.216 19 S 0.119 5.881 20 C -0.194 4.194 21 C -0.109 4.109 22 C 0.060 3.940 23 N -0.536 5.536 24 H 0.422 0.578 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.115 4.115 28 C 0.158 3.842 29 H 0.026 0.974 30 H 0.255 0.745 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.155 0.845 37 H 0.170 0.830 38 H 0.141 0.859 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -8.183 -12.740 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.365 4.365 8 H 0.096 0.904 9 N -0.309 5.309 10 C 0.054 3.946 11 C -0.179 4.179 12 C 0.045 3.955 13 N -0.335 5.335 14 C 0.370 3.630 15 O -0.407 6.407 16 C -0.094 4.094 17 C -0.113 4.113 18 C -0.336 4.336 19 S 0.378 5.622 20 C -0.330 4.330 21 C -0.143 4.143 22 C -0.058 4.058 23 N -0.138 5.138 24 H 0.261 0.739 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.153 4.153 28 C 0.047 3.953 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.172 0.828 37 H 0.188 0.812 38 H 0.158 0.842 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.611 -9.205 -13.321 16.272 hybrid contribution 1.997 2.503 1.175 3.411 sum 3.607 -6.701 -12.147 14.334 Atomic orbital electron populations 1.69899 1.04904 1.25424 1.56004 1.24800 0.95599 0.97638 1.01856 0.86259 0.78513 0.83378 0.77913 1.21249 1.21577 1.21085 1.18957 0.90233 0.82245 1.45020 0.90354 1.43676 1.01753 0.99209 1.86220 1.22169 0.83103 0.88439 1.00854 1.22931 0.96260 0.99450 0.99223 1.21564 0.98904 0.94075 0.80950 1.45621 1.42123 1.36853 1.08869 1.16903 0.80803 0.82751 0.82573 1.90824 1.40276 1.29345 1.80298 1.20562 0.99608 0.94574 0.94643 1.20342 1.01789 1.01331 0.87817 1.22640 1.06893 1.05342 0.98726 1.83797 1.43968 1.34173 1.00229 1.25161 1.02919 1.03417 1.01469 1.18930 1.03739 1.01631 0.89970 1.18332 1.01549 1.00855 0.85110 1.42079 1.35510 1.29560 1.06644 0.73912 1.21765 0.94828 0.96025 1.02475 1.22718 0.95870 0.95847 1.01095 1.21849 0.97961 0.94626 1.00897 1.20867 0.91547 0.87423 0.95426 0.95732 0.93504 0.94621 0.91652 0.91249 0.91343 0.76667 0.82755 0.81210 0.84177 0.91008 0.91024 0.92313 0.91763 0.91949 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.56 10.55 55.49 0.59 -24.97 16 2 C 0.00 -0.04 5.49 -17.43 -0.10 -0.14 16 3 Si 0.91 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.01 10.28 -15.06 -0.15 -6.16 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.59 -13.54 3.10 -162.21 -0.50 -14.04 16 10 C 0.18 4.14 5.34 -0.34 0.00 4.13 16 11 C -0.14 -2.70 6.26 -25.02 -0.16 -2.86 16 12 C 0.13 2.33 0.42 -130.73 -0.05 2.27 16 13 N -0.69 -11.61 4.35 -47.95 -0.21 -11.82 16 14 C 0.58 10.09 7.09 -12.95 -0.09 10.00 16 15 O -0.53 -10.31 15.01 5.16 0.08 -10.23 16 16 C 0.02 0.34 7.01 -82.10 -0.58 -0.24 16 17 C -0.08 -1.23 10.60 -38.95 -0.41 -1.64 16 18 C -0.22 -3.01 7.26 -38.67 -0.28 -3.29 16 19 S 0.12 1.30 23.31 -107.50 -2.51 -1.20 16 20 C -0.19 -1.86 11.13 28.86 0.32 -1.54 16 21 C -0.11 -1.20 10.16 -40.85 -0.42 -1.62 16 22 C 0.06 0.81 7.67 -84.01 -0.64 0.17 16 23 N -0.54 -7.41 6.14 -7.34 -0.05 -7.45 16 24 H 0.42 5.20 8.14 -40.82 -0.33 4.87 16 25 C -0.11 -1.71 6.01 -26.54 -0.16 -1.87 16 26 C -0.12 -1.58 6.91 -23.88 -0.17 -1.75 16 27 C -0.11 -1.81 6.45 -26.21 -0.17 -1.98 16 28 C 0.16 3.00 2.61 -68.73 -0.18 2.82 16 29 H 0.03 0.50 7.99 -51.93 -0.41 0.09 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.04 0.91 7.98 -51.93 -0.41 0.50 16 32 H 0.07 1.70 7.05 -51.93 -0.37 1.34 16 33 H 0.07 1.39 7.17 -51.93 -0.37 1.02 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.40 6.66 6.87 -40.82 -0.28 6.38 16 36 H 0.15 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.17 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.15 6.84 -51.93 -0.36 0.79 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.97 7.37 -51.93 -0.38 0.59 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -29.75 364.47 -11.21 -40.96 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.85 Total: 11.06 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.24 Total: -3.68 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.17 Total: -58.28 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.51 Total: -1.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.75 -11.21 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992386984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.838 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds