Wall clock time and date at job start Wed Apr 1 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99744 * 2 1 4 4 H 1.48497 * 109.46945 * 274.97306 * 3 2 1 5 5 H 1.48498 * 109.47305 * 34.97409 * 3 2 1 6 6 H 1.48497 * 109.47002 * 154.97640 * 3 2 1 7 7 C 1.38804 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99868 * 189.21053 * 7 2 1 9 9 N 1.36938 * 120.00363 * 9.21814 * 7 2 1 10 10 C 1.47372 * 125.57826 * 10.61506 * 9 7 2 11 11 C 1.54863 * 104.82116 * 155.30236 * 10 9 7 12 12 C 1.54917 * 101.76895 * 37.07389 * 11 10 9 13 13 N 1.46503 * 112.33096 * 86.21163 * 12 11 10 14 14 C 1.34772 * 119.99818 * 61.01800 * 13 12 11 15 15 O 1.21737 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.46419 * 119.99792 * 180.02562 * 14 13 12 17 17 C 1.35772 * 124.95662 * 180.02562 * 16 14 13 18 18 C 1.38878 * 115.18543 * 180.02562 * 17 16 14 19 19 N 1.39748 * 139.91555 * 180.29254 * 18 17 16 20 20 H 0.96998 * 125.63356 * 359.94158 * 19 18 17 21 21 C 1.36212 * 108.73490 * 180.02562 * 19 18 17 22 22 C 1.34519 * 109.29387 * 359.63355 * 21 19 18 23 23 C 1.38241 * 113.38951 * 0.02562 * 18 17 16 24 24 S 1.75617 * 124.96131 * 0.02562 * 16 14 13 25 25 C 1.53571 * 109.09529 * 211.32971 * 12 11 10 26 26 C 1.55466 * 106.05987 * 112.99727 * 25 12 11 27 27 C 1.54761 * 104.36047 * 335.35490 * 26 25 12 28 28 C 1.46981 * 125.58166 * 190.61058 * 9 7 2 29 29 H 1.09000 * 111.81260 * 59.07872 * 28 9 7 30 30 H 0.97000 * 120.00000 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36853 * 36.46748 * 10 9 7 32 32 H 1.08994 * 110.36613 * 274.14037 * 10 9 7 33 33 H 1.08997 * 110.97150 * 278.95286 * 11 10 9 34 34 H 1.09000 * 110.97076 * 155.19347 * 11 10 9 35 35 H 0.96998 * 120.00162 * 241.01927 * 13 12 11 36 36 H 1.07999 * 122.40950 * 0.02562 * 17 16 14 37 37 H 1.08001 * 125.35665 * 179.90261 * 21 19 18 38 38 H 1.07999 * 126.07345 * 180.20661 * 22 21 19 39 39 H 1.09005 * 110.01903 * 232.97095 * 25 12 11 40 40 H 1.08995 * 110.02118 * 354.36097 * 25 12 11 41 41 H 1.08997 * 110.50672 * 216.56830 * 26 25 12 42 42 H 1.09000 * 110.39832 * 94.09519 * 26 25 12 43 43 H 1.08995 * 110.67332 * 279.25075 * 27 26 25 44 44 H 1.08998 * 110.66687 * 156.10642 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5041 2.6200 0.8025 6 1 3.5963 1.4121 0.5922 7 6 2.0103 -1.2021 0.0005 8 1 3.0798 -1.2081 0.1503 9 7 1.3389 -2.3805 -0.1889 10 6 -0.0646 -2.5080 -0.6201 11 6 -0.1507 -3.9061 -1.2803 12 6 0.7910 -4.7408 -0.3767 13 7 0.1011 -5.2813 0.7973 14 6 -0.9363 -6.1271 0.6391 15 8 -1.3003 -6.4415 -0.4791 16 6 -1.6261 -6.6668 1.8124 17 6 -2.6786 -7.5235 1.7703 18 6 -3.1785 -7.9069 3.0080 19 7 -4.1790 -8.7162 3.5529 20 1 -4.8140 -9.2473 3.0474 21 6 -4.1164 -8.6345 4.9111 22 6 -3.1112 -7.8119 5.2610 23 6 -2.5043 -7.3380 4.0723 24 16 -1.2130 -6.3007 3.4796 25 6 1.4519 -5.8408 -1.2202 26 6 2.9642 -5.4857 -1.2814 27 6 3.0090 -3.9561 -1.0503 28 6 1.9000 -3.7251 0.0044 29 1 2.2542 -3.8733 1.0246 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3112 -1.7309 -1.3436 32 1 -0.7321 -2.4526 0.2397 33 1 0.2177 -3.8767 -2.3057 34 1 -1.1693 -4.2925 -1.2444 35 1 0.3909 -5.0305 1.6883 36 1 -3.0971 -7.8811 0.8411 37 1 -4.7682 -9.1525 5.5991 38 1 -2.8198 -7.5569 6.2692 39 1 1.2998 -6.8129 -0.7511 40 1 1.0328 -5.8421 -2.2264 41 1 3.3760 -5.7361 -2.2590 42 1 3.5090 -6.0068 -0.4940 43 1 2.7809 -3.4209 -1.9719 44 1 3.9806 -3.6544 -0.6592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992446177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:17 Heat of formation + Delta-G solvation = 65.821775 kcal Electronic energy + Delta-G solvation = -27944.656519 eV Core-core repulsion = 24182.895241 eV Total energy + Delta-G solvation = -3761.761279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.33907 -40.14253 -38.13096 -35.09003 -34.18084 -33.39438 -31.45584 -31.10237 -29.90099 -28.27731 -26.68169 -26.04532 -23.97748 -23.74850 -21.95766 -21.06914 -20.52419 -19.98642 -19.18918 -18.88595 -18.34047 -16.95247 -16.72340 -15.74095 -15.53367 -15.09562 -14.87742 -14.55770 -14.50218 -14.29447 -13.97551 -13.65072 -13.48503 -13.13532 -12.88567 -12.78890 -12.14002 -12.07868 -11.89168 -11.71964 -11.50349 -11.17645 -11.02396 -10.93905 -10.75962 -10.65826 -10.51267 -10.17393 -10.13491 -9.86560 -9.82484 -9.78557 -9.63035 -9.48941 -8.63909 -8.53032 -8.22695 -7.77068 -6.78619 -5.71218 -3.05304 0.49835 1.37758 1.92489 2.29185 2.48981 2.78277 3.38157 3.41450 3.44920 3.47553 3.48894 4.50550 4.68492 4.69769 4.83105 4.94971 5.16009 5.21162 5.30369 5.34787 5.53549 5.62826 5.67890 5.77110 5.82149 5.87365 5.90648 6.00494 6.09020 6.16211 6.26037 6.32126 6.37088 6.43210 6.54261 6.55234 6.61050 6.78835 6.80285 6.99819 7.13506 7.18847 7.57176 7.65099 7.77376 7.83830 8.28446 8.43196 9.21669 9.83797 10.51134 11.40878 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.003094 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.449905 B = 9046.281832 C =10101.680067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.174 3.826 11 C -0.145 4.145 12 C 0.162 3.838 13 N -0.697 5.697 14 C 0.591 3.409 15 O -0.529 6.529 16 C -0.228 4.228 17 C -0.038 4.038 18 C 0.025 3.975 19 N -0.558 5.558 20 H 0.419 0.581 21 C 0.054 3.946 22 C -0.171 4.171 23 C -0.191 4.191 24 S 0.170 5.830 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.128 4.128 28 C 0.162 3.838 29 H 0.048 0.952 30 H 0.252 0.748 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.148 0.852 37 H 0.177 0.823 38 H 0.146 0.854 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -19.178 7.780 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.184 4.184 12 C 0.076 3.924 13 N -0.346 5.346 14 C 0.377 3.623 15 O -0.407 6.407 16 C -0.348 4.348 17 C -0.074 4.074 18 C -0.088 4.088 19 N -0.160 5.160 20 H 0.256 0.744 21 C -0.080 4.080 22 C -0.201 4.201 23 C -0.313 4.313 24 S 0.434 5.566 25 C -0.151 4.151 26 C -0.162 4.162 27 C -0.168 4.168 28 C 0.053 3.947 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.166 0.834 37 H 0.194 0.806 38 H 0.164 0.836 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.871 -18.285 7.575 20.382 hybrid contribution -0.976 -0.102 -0.238 1.010 sum -5.847 -18.387 7.337 20.642 Atomic orbital electron populations 1.69978 1.04935 1.25099 1.56188 1.24830 0.95578 0.97770 1.02111 0.86143 0.78689 0.83714 0.77459 1.21690 1.21860 1.20617 1.18986 0.91000 0.82577 1.42953 0.90617 1.44508 1.09566 0.99231 1.78543 1.21423 0.85487 0.91410 0.96756 1.23353 0.98994 0.97996 0.98064 1.21681 0.92928 0.92691 0.85119 1.45759 1.32661 1.46249 1.09951 1.16764 0.79700 0.78817 0.87062 1.90810 1.65507 1.60111 1.24298 1.23879 1.04831 1.08488 0.97613 1.19193 0.95184 0.97066 0.95964 1.18006 0.95945 1.01572 0.93326 1.41883 1.28476 1.39480 1.06124 0.74379 1.21842 1.00904 1.02153 0.83054 1.20137 0.99363 1.03910 0.96664 1.23234 1.03582 1.06525 0.97947 1.83920 1.30755 1.46147 0.95811 1.22501 0.95029 0.97476 1.00047 1.22568 0.95634 0.97272 1.00746 1.22907 0.99308 0.93913 1.00690 1.21791 0.90970 0.85878 0.96035 0.93489 0.93762 0.91272 0.95745 0.91293 0.91117 0.76767 0.83394 0.80601 0.83575 0.92085 0.91084 0.92227 0.92292 0.90719 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.68 55.49 0.59 -26.21 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.14 9.97 -15.06 -0.15 -6.29 16 8 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 9 N -0.59 -14.69 3.03 -161.13 -0.49 -15.18 16 10 C 0.17 4.29 5.42 -2.58 -0.01 4.28 16 11 C -0.14 -2.99 5.71 -24.74 -0.14 -3.13 16 12 C 0.16 2.97 0.74 -129.38 -0.10 2.88 16 13 N -0.70 -11.89 5.22 -46.72 -0.24 -12.14 16 14 C 0.59 10.09 6.96 -12.97 -0.09 10.00 16 15 O -0.53 -10.19 14.58 5.16 0.08 -10.11 16 16 C -0.23 -3.34 6.38 -37.17 -0.24 -3.58 16 17 C -0.04 -0.50 9.88 -40.23 -0.40 -0.90 16 18 C 0.03 0.30 7.67 -84.01 -0.64 -0.35 16 19 N -0.56 -4.51 6.21 -10.89 -0.07 -4.58 16 20 H 0.42 2.04 8.96 -40.82 -0.37 1.68 16 21 C 0.05 0.38 11.85 -16.92 -0.20 0.18 16 22 C -0.17 -1.63 10.85 -39.60 -0.43 -2.06 16 23 C -0.19 -2.33 7.31 -38.28 -0.28 -2.61 16 24 S 0.17 2.20 22.29 -107.50 -2.40 -0.19 16 25 C -0.11 -1.82 5.41 -25.12 -0.14 -1.96 16 26 C -0.12 -1.84 6.87 -24.49 -0.17 -2.01 16 27 C -0.13 -2.29 6.22 -24.87 -0.15 -2.44 16 28 C 0.16 3.25 3.67 -65.60 -0.24 3.01 16 29 H 0.05 0.95 7.96 -51.93 -0.41 0.53 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.07 1.90 6.92 -51.93 -0.36 1.54 16 32 H 0.02 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.07 1.39 7.63 -51.93 -0.40 0.99 16 34 H 0.07 1.49 6.53 -51.93 -0.34 1.15 16 35 H 0.40 6.34 7.54 -40.82 -0.31 6.04 16 36 H 0.15 1.82 8.00 -52.49 -0.42 1.40 16 37 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.06 0.98 7.58 -51.93 -0.39 0.59 16 40 H 0.07 1.18 7.37 -51.93 -0.38 0.80 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 364.55 15.07 5.49 5.49 Total: -1.00 -32.80 364.55 -11.41 -44.21 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.88 Total: 7.02 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.47 Total: -5.25 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.21 Total: -58.10 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.40 Total: -0.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.80 -11.41 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992446177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.031 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds