Wall clock time and date at job start Wed Apr 1 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99744 * 2 1 4 4 H 1.48497 * 109.46945 * 274.97306 * 3 2 1 5 5 H 1.48498 * 109.47305 * 34.97409 * 3 2 1 6 6 H 1.48497 * 109.47002 * 154.97640 * 3 2 1 7 7 C 1.38804 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99868 * 189.21053 * 7 2 1 9 9 N 1.36938 * 120.00363 * 9.21814 * 7 2 1 10 10 C 1.47372 * 125.57826 * 10.61506 * 9 7 2 11 11 C 1.54863 * 104.82116 * 155.30236 * 10 9 7 12 12 C 1.54917 * 101.76895 * 37.07389 * 11 10 9 13 13 N 1.46503 * 112.33096 * 86.21163 * 12 11 10 14 14 C 1.34772 * 119.99818 * 61.01800 * 13 12 11 15 15 O 1.21737 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.46419 * 119.99792 * 180.02562 * 14 13 12 17 17 C 1.35772 * 124.95662 * 180.02562 * 16 14 13 18 18 C 1.38878 * 115.18543 * 180.02562 * 17 16 14 19 19 N 1.39748 * 139.91555 * 180.29254 * 18 17 16 20 20 H 0.96998 * 125.63356 * 359.94158 * 19 18 17 21 21 C 1.36212 * 108.73490 * 180.02562 * 19 18 17 22 22 C 1.34519 * 109.29387 * 359.63355 * 21 19 18 23 23 C 1.38241 * 113.38951 * 0.02562 * 18 17 16 24 24 S 1.75617 * 124.96131 * 0.02562 * 16 14 13 25 25 C 1.53571 * 109.09529 * 211.32971 * 12 11 10 26 26 C 1.55466 * 106.05987 * 112.99727 * 25 12 11 27 27 C 1.54761 * 104.36047 * 335.35490 * 26 25 12 28 28 C 1.46981 * 125.58166 * 190.61058 * 9 7 2 29 29 H 1.09000 * 111.81260 * 59.07872 * 28 9 7 30 30 H 0.97000 * 120.00000 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36853 * 36.46748 * 10 9 7 32 32 H 1.08994 * 110.36613 * 274.14037 * 10 9 7 33 33 H 1.08997 * 110.97150 * 278.95286 * 11 10 9 34 34 H 1.09000 * 110.97076 * 155.19347 * 11 10 9 35 35 H 0.96998 * 120.00162 * 241.01927 * 13 12 11 36 36 H 1.07999 * 122.40950 * 0.02562 * 17 16 14 37 37 H 1.08001 * 125.35665 * 179.90261 * 21 19 18 38 38 H 1.07999 * 126.07345 * 180.20661 * 22 21 19 39 39 H 1.09005 * 110.01903 * 232.97095 * 25 12 11 40 40 H 1.08995 * 110.02118 * 354.36097 * 25 12 11 41 41 H 1.08997 * 110.50672 * 216.56830 * 26 25 12 42 42 H 1.09000 * 110.39832 * 94.09519 * 26 25 12 43 43 H 1.08995 * 110.67332 * 279.25075 * 27 26 25 44 44 H 1.08998 * 110.66687 * 156.10642 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5041 2.6200 0.8025 6 1 3.5963 1.4121 0.5922 7 6 2.0103 -1.2021 0.0005 8 1 3.0798 -1.2081 0.1503 9 7 1.3389 -2.3805 -0.1889 10 6 -0.0646 -2.5080 -0.6201 11 6 -0.1507 -3.9061 -1.2803 12 6 0.7910 -4.7408 -0.3767 13 7 0.1011 -5.2813 0.7973 14 6 -0.9363 -6.1271 0.6391 15 8 -1.3003 -6.4415 -0.4791 16 6 -1.6261 -6.6668 1.8124 17 6 -2.6786 -7.5235 1.7703 18 6 -3.1785 -7.9069 3.0080 19 7 -4.1790 -8.7162 3.5529 20 1 -4.8140 -9.2473 3.0474 21 6 -4.1164 -8.6345 4.9111 22 6 -3.1112 -7.8119 5.2610 23 6 -2.5043 -7.3380 4.0723 24 16 -1.2130 -6.3007 3.4796 25 6 1.4519 -5.8408 -1.2202 26 6 2.9642 -5.4857 -1.2814 27 6 3.0090 -3.9561 -1.0503 28 6 1.9000 -3.7251 0.0044 29 1 2.2542 -3.8733 1.0246 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3112 -1.7309 -1.3436 32 1 -0.7321 -2.4526 0.2397 33 1 0.2177 -3.8767 -2.3057 34 1 -1.1693 -4.2925 -1.2444 35 1 0.3909 -5.0305 1.6883 36 1 -3.0971 -7.8811 0.8411 37 1 -4.7682 -9.1525 5.5991 38 1 -2.8198 -7.5569 6.2692 39 1 1.2998 -6.8129 -0.7511 40 1 1.0328 -5.8421 -2.2264 41 1 3.3760 -5.7361 -2.2590 42 1 3.5090 -6.0068 -0.4940 43 1 2.7809 -3.4209 -1.9719 44 1 3.9806 -3.6544 -0.6592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992446177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:16 Heat of formation + Delta-G solvation = 45.052235 kcal Electronic energy + Delta-G solvation = -27945.557154 eV Core-core repulsion = 24182.895241 eV Total energy + Delta-G solvation = -3762.661913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.12729 -41.60277 -39.59122 -36.15592 -35.88985 -34.78514 -33.36399 -31.88332 -31.57642 -29.33865 -28.40440 -27.47622 -25.71769 -24.99880 -23.05741 -22.24822 -21.65954 -21.46857 -20.47480 -20.29295 -19.32223 -18.82038 -17.94856 -17.14725 -16.85810 -16.47958 -16.30375 -15.87055 -15.79208 -15.43853 -15.20143 -15.03561 -14.70798 -14.48372 -14.37468 -13.89553 -13.65947 -13.55516 -13.25359 -12.97747 -12.94451 -12.82352 -12.61682 -12.51182 -12.30898 -12.01354 -11.94818 -11.90509 -11.72949 -11.66616 -11.49780 -11.25555 -10.98613 -10.66629 -10.65785 -10.05915 -9.13582 -8.83297 -8.63276 -7.83558 -5.19327 -0.49196 0.42551 0.97549 1.39412 1.47758 1.49377 1.58191 1.72849 1.90636 2.17969 2.30106 2.51917 3.34166 3.35265 3.61992 3.74971 3.93377 3.95627 3.96918 4.16962 4.23578 4.35887 4.39186 4.46020 4.56176 4.57671 4.62128 4.74684 4.81305 4.87020 4.94185 4.98624 5.06446 5.10445 5.15819 5.23210 5.32712 5.46714 5.53279 5.55793 5.61146 5.66218 5.71946 5.79485 6.21668 6.43545 6.62509 7.09295 7.10079 7.78696 8.45969 9.28044 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.003094 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.449905 B = 9046.281832 C =10101.680067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.230 4.230 8 H 0.085 0.915 9 N -0.610 5.610 10 C 0.188 3.812 11 C -0.131 4.131 12 C 0.169 3.831 13 N -0.699 5.699 14 C 0.593 3.407 15 O -0.558 6.558 16 C -0.267 4.267 17 C -0.021 4.021 18 C -0.005 4.005 19 N -0.545 5.545 20 H 0.435 0.565 21 C 0.093 3.907 22 C -0.201 4.201 23 C -0.197 4.197 24 S 0.158 5.842 25 C -0.105 4.105 26 C -0.108 4.108 27 C -0.122 4.122 28 C 0.152 3.848 29 H 0.052 0.948 30 H 0.245 0.755 31 H 0.032 0.968 32 H -0.010 1.010 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.402 0.598 36 H 0.151 0.849 37 H 0.229 0.771 38 H 0.163 0.837 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 -21.800 9.253 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.359 4.359 8 H 0.103 0.897 9 N -0.334 5.334 10 C 0.062 3.938 11 C -0.171 4.171 12 C 0.083 3.917 13 N -0.348 5.348 14 C 0.381 3.619 15 O -0.439 6.439 16 C -0.387 4.387 17 C -0.058 4.058 18 C -0.118 4.118 19 N -0.147 5.147 20 H 0.276 0.724 21 C -0.043 4.043 22 C -0.231 4.231 23 C -0.320 4.320 24 S 0.421 5.579 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.162 4.162 28 C 0.046 3.954 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.008 0.992 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.169 0.831 37 H 0.245 0.755 38 H 0.181 0.819 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.562 -20.950 9.035 23.267 hybrid contribution -1.222 0.585 -0.537 1.457 sum -5.783 -20.365 8.497 22.812 Atomic orbital electron populations 1.70190 1.06494 1.25202 1.58032 1.25653 0.96363 1.01107 1.02826 0.85098 0.77984 0.79425 0.77069 1.21757 1.22585 1.18881 1.19375 0.91563 0.83558 1.41360 0.89736 1.44704 1.09447 1.00638 1.78604 1.21061 0.85371 0.92643 0.94688 1.23168 0.99435 0.95915 0.98555 1.21579 0.91784 0.93014 0.85370 1.45728 1.32991 1.46343 1.09732 1.17036 0.79225 0.78166 0.87519 1.90773 1.66301 1.61276 1.25577 1.23571 1.06618 1.11018 0.97475 1.19329 0.94046 0.95531 0.96889 1.17946 0.97784 1.03459 0.92577 1.42017 1.27536 1.38403 1.06756 0.72380 1.22697 0.99319 0.99415 0.82838 1.20572 1.00479 1.05259 0.96745 1.23615 1.02974 1.05864 0.99498 1.83797 1.31895 1.47133 0.95085 1.22446 0.95983 0.96686 0.99293 1.22507 0.94564 0.94665 1.02908 1.22763 0.98444 0.96233 0.98731 1.22061 0.92326 0.83966 0.97086 0.93027 0.94578 0.94923 0.99225 0.90723 0.91850 0.76294 0.83115 0.75486 0.81910 0.91473 0.91345 0.89891 0.90166 0.92615 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.31 10.68 21.65 0.23 -58.08 16 2 C -0.07 -3.79 5.40 84.86 0.46 -3.34 16 3 Si 0.98 46.08 29.56 68.60 2.03 48.11 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.23 -12.66 9.97 84.03 0.84 -11.82 16 8 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 9 N -0.61 -31.06 3.03 -663.71 -2.01 -33.07 16 10 C 0.19 9.82 5.42 86.85 0.47 10.29 16 11 C -0.13 -5.64 5.71 31.89 0.18 -5.46 16 12 C 0.17 6.27 0.74 5.18 0.00 6.28 16 13 N -0.70 -24.51 5.22 -419.92 -2.19 -26.70 16 14 C 0.59 20.89 6.96 86.37 0.60 21.50 16 15 O -0.56 -22.10 14.58 -4.47 -0.07 -22.16 16 16 C -0.27 -8.07 6.38 23.83 0.15 -7.92 16 17 C -0.02 -0.57 9.88 21.85 0.22 -0.35 16 18 C 0.00 -0.10 7.67 38.03 0.29 0.19 16 19 N -0.54 -6.99 6.21 -188.37 -1.17 -8.16 16 20 H 0.44 2.68 8.96 -92.71 -0.83 1.84 16 21 C 0.09 0.89 11.85 83.16 0.99 1.88 16 22 C -0.20 -3.24 10.85 22.26 0.24 -3.00 16 23 C -0.20 -4.58 7.31 23.11 0.17 -4.41 16 24 S 0.16 4.16 22.29 -56.49 -1.26 2.90 16 25 C -0.11 -3.30 5.41 31.63 0.17 -3.13 16 26 C -0.11 -2.93 6.87 32.04 0.22 -2.71 16 27 C -0.12 -4.19 6.22 31.80 0.20 -4.00 16 28 C 0.15 6.15 3.67 46.24 0.17 6.32 16 29 H 0.05 2.06 7.96 -2.39 -0.02 2.04 16 30 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.03 1.91 6.92 -2.39 -0.02 1.90 16 32 H -0.01 -0.60 8.08 -2.39 -0.02 -0.62 16 33 H 0.07 3.09 7.63 -2.39 -0.02 3.07 16 34 H 0.06 2.81 6.53 -2.39 -0.02 2.79 16 35 H 0.40 13.29 7.54 -92.71 -0.70 12.59 16 36 H 0.15 3.73 8.00 -2.91 -0.02 3.70 16 37 H 0.23 -0.18 8.06 -2.91 -0.02 -0.20 16 38 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.07 2.06 7.58 -2.38 -0.02 2.04 16 40 H 0.07 2.20 7.37 -2.39 -0.02 2.18 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 2.14 8.09 -2.39 -0.02 2.12 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.07 364.55 0.46 -74.61 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.48 Total: 22.24 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 5.37 Total: 0.31 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -5.14 Total: -126.00 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.26 Total: 2.90 kcal Total: -75.07 0.46 -74.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992446177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.664 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds