Wall clock time and date at job start Wed Apr 1 2020 03:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 110.88646 * 2 1 4 4 C 1.54907 * 111.00131 * 123.88295 * 2 1 3 5 5 N 1.47420 * 104.83524 * 81.06567 * 4 2 1 6 6 C 1.34780 * 125.65180 * 204.09058 * 5 4 2 7 7 O 1.21618 * 119.99544 * 0.02562 * 6 5 4 8 8 C 1.47197 * 120.00194 * 180.02562 * 6 5 4 9 9 C 1.33787 * 124.64830 * 180.02562 * 8 6 5 10 10 C 1.40104 * 115.49921 * 179.97438 * 9 8 6 11 11 C 1.41714 * 129.98970 * 180.02562 * 10 9 8 12 12 C 1.36034 * 119.33749 * 180.02562 * 11 10 9 13 13 N 1.32313 * 121.58020 * 359.93487 * 12 11 10 14 14 C 1.31352 * 122.05488 * 0.02562 * 13 12 11 15 15 C 1.39734 * 120.59816 * 0.02562 * 14 13 12 16 16 S 1.75532 * 124.64822 * 359.70038 * 8 6 5 17 17 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 18 18 C 1.54330 * 107.26840 * 358.94103 * 17 5 4 19 19 H 1.08991 * 110.72004 * 219.44241 * 18 17 5 20 20 N 1.46499 * 110.71556 * 96.16892 * 18 17 5 21 21 C 1.36946 * 119.99920 * 86.45572 * 20 18 17 22 22 H 1.08000 * 119.99914 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00049 * 179.97438 * 21 20 18 24 24 N 1.31629 * 120.00102 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00271 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46861 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47533 * 119.99825 * 25 23 21 28 28 H 1.48497 * 109.47266 * 240.00587 * 25 23 21 29 29 H 1.08996 * 109.47442 * 297.57277 * 1 2 3 30 30 H 1.09002 * 109.47243 * 57.57042 * 1 2 3 31 31 H 1.09001 * 109.47331 * 177.57250 * 1 2 3 32 32 H 1.09002 * 109.47359 * 182.42369 * 3 2 1 33 33 H 1.08995 * 109.47577 * 302.42806 * 3 2 1 34 34 H 1.09006 * 109.47268 * 62.42753 * 3 2 1 35 35 H 1.08997 * 110.36783 * 322.22286 * 4 2 1 36 36 H 1.08999 * 110.36448 * 199.90027 * 4 2 1 37 37 H 1.07996 * 122.25301 * 359.94420 * 9 8 6 38 38 H 1.08005 * 120.33155 * 0.02562 * 11 10 9 39 39 H 1.07997 * 119.21295 * 179.97438 * 12 11 10 40 40 H 1.07994 * 119.70578 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.88351 * 118.35702 * 17 5 4 42 42 H 1.08998 * 109.88379 * 239.52492 * 17 5 4 43 43 H 0.96998 * 120.00239 * 266.45268 * 20 18 17 44 44 H 0.96997 * 119.99978 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0852 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7741 6 6 1.9471 -3.2824 1.5952 7 8 1.9417 -3.1223 2.8008 8 6 1.8805 -4.6410 1.0328 9 6 1.8114 -5.7624 1.7591 10 6 1.7554 -6.9542 1.0248 11 6 1.6770 -8.2967 1.4719 12 6 1.6338 -9.3025 0.5571 13 7 1.6619 -9.0583 -0.7430 14 6 1.7332 -7.8372 -1.2216 15 6 1.7832 -6.7376 -0.3607 16 16 1.8729 -5.0116 -0.6830 17 6 2.0285 -2.2649 -0.6952 18 6 2.0861 -0.8083 -1.2020 19 1 1.4524 -0.6799 -2.0793 20 7 3.4666 -0.4162 -1.4960 21 6 4.0066 -0.6815 -2.7262 22 1 3.4148 -1.1803 -3.4795 23 6 5.3145 -0.3095 -3.0050 24 7 6.0360 0.2979 -2.0868 25 14 6.0508 -0.6708 -4.6833 26 1 5.0414 -1.3568 -5.5294 27 1 6.4567 0.6026 -5.3304 28 1 7.2397 -1.5462 -4.5242 29 1 -0.3634 0.4757 0.9109 30 1 -0.3634 0.5511 -0.8674 31 1 -0.3634 -1.0267 -0.0435 32 1 3.1643 1.4029 -0.0435 33 1 1.6902 1.9654 -0.8673 34 1 1.7606 1.9385 0.9110 35 1 1.4672 -0.6454 2.0839 36 1 3.1182 -0.5229 1.4026 37 1 1.8001 -5.7498 2.8390 38 1 1.6519 -8.5190 2.5286 39 1 1.5745 -10.3248 0.9001 40 1 1.7543 -7.6815 -2.2900 41 1 2.9063 -2.8120 -1.0391 42 1 1.1218 -2.7484 -1.0590 43 1 3.9983 0.0315 -0.8194 44 1 6.9500 0.5576 -2.2815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995886597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:35 Heat of formation + Delta-G solvation = 40.939816 kcal Electronic energy + Delta-G solvation = -27793.386536 eV Core-core repulsion = 24030.546295 eV Total energy + Delta-G solvation = -3762.840241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.60213 -40.15455 -38.20286 -36.08205 -34.11227 -33.37675 -31.64401 -30.89565 -30.59868 -28.14390 -27.01821 -26.75284 -24.80220 -24.07704 -23.81402 -21.91806 -21.37090 -19.62190 -18.94863 -18.06016 -17.31845 -16.88584 -16.47851 -16.26129 -15.89218 -15.26672 -14.84927 -14.64155 -14.52972 -14.21869 -14.05387 -13.93606 -13.76351 -13.38958 -13.02193 -12.90455 -12.55283 -12.28940 -12.19181 -11.97032 -11.93538 -11.84977 -11.58000 -11.11413 -10.98479 -10.91419 -10.65879 -10.51461 -10.27625 -10.13240 -10.08581 -9.91112 -9.85744 -9.73842 -9.22300 -9.09198 -8.51101 -7.96558 -7.16531 -5.91964 -3.22800 0.03852 0.80719 1.23125 1.69679 1.81958 2.99387 3.13990 3.34918 3.40982 3.43405 3.55663 4.20648 4.27906 4.44707 4.47097 4.65211 4.70552 4.85629 4.94396 5.13717 5.17616 5.30641 5.32955 5.38940 5.49818 5.50468 5.56365 5.62983 5.77442 5.82819 5.87919 5.98579 5.99222 6.06442 6.12541 6.14834 6.22981 6.27927 6.33417 6.40914 6.48831 6.63247 6.83886 7.57129 7.59569 7.68745 8.12082 8.25405 9.37834 9.90235 10.24976 11.29845 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.003803 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.930893 B = 7360.158686 C = 9272.243808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.127 4.127 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.594 3.406 7 O -0.537 6.537 8 C -0.194 4.194 9 C -0.065 4.065 10 C -0.045 4.045 11 C -0.123 4.123 12 C 0.073 3.927 13 N -0.472 5.472 14 C 0.161 3.839 15 C -0.225 4.225 16 S 0.202 5.798 17 C 0.053 3.947 18 C 0.186 3.814 19 H 0.075 0.925 20 N -0.710 5.710 21 C -0.250 4.250 22 H 0.074 0.926 23 C -0.005 4.005 24 N -0.927 5.927 25 Si 0.906 3.094 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.388 0.612 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 -10.377 5.391 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.185 4.185 4 C 0.000 4.000 5 N -0.326 5.326 6 C 0.381 3.619 7 O -0.416 6.416 8 C -0.315 4.315 9 C -0.098 4.098 10 C -0.060 4.060 11 C -0.145 4.145 12 C -0.076 4.076 13 N -0.181 5.181 14 C -0.010 4.010 15 C -0.342 4.342 16 S 0.469 5.531 17 C -0.075 4.075 18 C 0.073 3.927 19 H 0.093 0.907 20 N -0.351 5.351 21 C -0.381 4.381 22 H 0.092 0.908 23 C -0.202 4.202 24 N -0.574 5.574 25 Si 0.737 3.263 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.180 0.820 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.224 0.776 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.009 -10.223 4.055 16.284 hybrid contribution 0.791 -0.405 1.162 1.463 sum -11.218 -10.628 5.217 16.310 Atomic orbital electron populations 1.21701 0.93800 1.01584 1.01763 1.22025 0.95454 0.96220 0.95300 1.21609 1.02686 0.93322 1.00913 1.22356 1.01557 0.78804 0.97279 1.48249 1.70380 1.06270 1.07745 1.16673 0.77569 0.82078 0.85580 1.90795 1.51913 1.85368 1.13549 1.24021 1.11449 0.97827 0.98182 1.20060 0.99012 0.88926 1.01843 1.18318 1.01390 0.94494 0.91815 1.21760 1.00274 0.90892 1.01572 1.22103 0.97645 0.99669 0.88200 1.67685 1.11893 1.22344 1.16219 1.22340 0.93673 0.85519 0.99452 1.24741 1.08961 1.02283 0.98263 1.85064 1.73064 0.93079 1.01842 1.23577 1.01439 1.03866 0.78599 1.21140 0.88949 0.88107 0.94515 0.90733 1.42508 1.08156 1.69581 1.14830 1.19257 0.95579 1.32785 0.90493 0.90822 1.24751 0.96794 1.00705 0.97932 1.69663 1.09541 1.45002 1.33170 0.86148 0.79104 0.77510 0.83563 1.20379 1.21757 1.21795 0.92662 0.92106 0.92883 0.90754 0.92067 0.93439 0.90716 0.90717 0.82586 0.84271 0.82491 0.81966 0.89351 0.91888 0.77608 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.60 37.16 0.32 -1.26 16 2 C -0.09 -1.29 0.83 -152.36 -0.13 -1.41 16 3 C -0.13 -1.88 8.35 37.15 0.31 -1.57 16 4 C 0.12 1.92 5.81 -2.53 -0.01 1.91 16 5 N -0.60 -9.77 3.31 -171.87 -0.57 -10.33 16 6 C 0.59 10.13 7.83 -12.62 -0.10 10.04 16 7 O -0.54 -10.36 16.98 5.26 0.09 -10.27 16 8 C -0.19 -2.88 6.27 -37.51 -0.24 -3.11 16 9 C -0.07 -0.87 9.81 -40.44 -0.40 -1.27 16 10 C -0.04 -0.55 5.91 -107.11 -0.63 -1.18 16 11 C -0.12 -1.23 10.13 -39.05 -0.40 -1.63 16 12 C 0.07 0.73 11.06 -18.14 -0.20 0.53 16 13 N -0.47 -5.61 10.34 -13.41 -0.14 -5.75 16 14 C 0.16 1.87 11.24 -17.20 -0.19 1.67 16 15 C -0.22 -2.83 6.54 -38.26 -0.25 -3.08 16 16 S 0.20 2.66 18.47 -107.50 -1.99 0.67 16 17 C 0.05 0.85 4.51 -3.06 -0.01 0.84 16 18 C 0.19 3.20 2.87 -66.09 -0.19 3.01 16 19 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 20 N -0.71 -15.63 4.59 -51.65 -0.24 -15.86 16 21 C -0.25 -6.24 9.98 -15.06 -0.15 -6.39 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 24 N -0.93 -26.18 13.06 55.49 0.72 -25.45 16 25 Si 0.91 21.06 29.55 -169.99 -5.02 16.03 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.64 7.81 -51.93 -0.41 0.24 16 32 H 0.07 1.30 6.17 -51.93 -0.32 0.98 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 36 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 37 H 0.16 1.91 7.96 -52.49 -0.42 1.49 16 38 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 39 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.09 1.61 6.86 -51.93 -0.36 1.25 16 42 H 0.06 0.89 6.78 -51.93 -0.35 0.53 16 43 H 0.39 9.21 6.02 -40.82 -0.25 8.97 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -30.17 371.37 -9.76 -39.93 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.85 Total: 8.59 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.36 Total: -3.15 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.22 Total: -57.40 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.99 Total: 0.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.17 -9.76 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995886597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.869 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds