Wall clock time and date at job start Wed Apr 1 2020 03:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 110.88646 * 2 1 4 4 C 1.54907 * 111.00131 * 123.88295 * 2 1 3 5 5 N 1.47420 * 104.83524 * 81.06567 * 4 2 1 6 6 C 1.34780 * 125.65180 * 204.09058 * 5 4 2 7 7 O 1.21618 * 119.99544 * 0.02562 * 6 5 4 8 8 C 1.47197 * 120.00194 * 180.02562 * 6 5 4 9 9 C 1.33787 * 124.64830 * 180.02562 * 8 6 5 10 10 C 1.40104 * 115.49921 * 179.97438 * 9 8 6 11 11 C 1.41714 * 129.98970 * 180.02562 * 10 9 8 12 12 C 1.36034 * 119.33749 * 180.02562 * 11 10 9 13 13 N 1.32313 * 121.58020 * 359.93487 * 12 11 10 14 14 C 1.31352 * 122.05488 * 0.02562 * 13 12 11 15 15 C 1.39734 * 120.59816 * 0.02562 * 14 13 12 16 16 S 1.75532 * 124.64822 * 359.70038 * 8 6 5 17 17 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 18 18 C 1.54330 * 107.26840 * 358.94103 * 17 5 4 19 19 H 1.08991 * 110.72004 * 219.44241 * 18 17 5 20 20 N 1.46499 * 110.71556 * 96.16892 * 18 17 5 21 21 C 1.36946 * 119.99920 * 86.45572 * 20 18 17 22 22 H 1.08000 * 119.99914 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00049 * 179.97438 * 21 20 18 24 24 N 1.31629 * 120.00102 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00271 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46861 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47533 * 119.99825 * 25 23 21 28 28 H 1.48497 * 109.47266 * 240.00587 * 25 23 21 29 29 H 1.08996 * 109.47442 * 297.57277 * 1 2 3 30 30 H 1.09002 * 109.47243 * 57.57042 * 1 2 3 31 31 H 1.09001 * 109.47331 * 177.57250 * 1 2 3 32 32 H 1.09002 * 109.47359 * 182.42369 * 3 2 1 33 33 H 1.08995 * 109.47577 * 302.42806 * 3 2 1 34 34 H 1.09006 * 109.47268 * 62.42753 * 3 2 1 35 35 H 1.08997 * 110.36783 * 322.22286 * 4 2 1 36 36 H 1.08999 * 110.36448 * 199.90027 * 4 2 1 37 37 H 1.07996 * 122.25301 * 359.94420 * 9 8 6 38 38 H 1.08005 * 120.33155 * 0.02562 * 11 10 9 39 39 H 1.07997 * 119.21295 * 179.97438 * 12 11 10 40 40 H 1.07994 * 119.70578 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.88351 * 118.35702 * 17 5 4 42 42 H 1.08998 * 109.88379 * 239.52492 * 17 5 4 43 43 H 0.96998 * 120.00239 * 266.45268 * 20 18 17 44 44 H 0.96997 * 119.99978 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0852 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7741 6 6 1.9471 -3.2824 1.5952 7 8 1.9417 -3.1223 2.8008 8 6 1.8805 -4.6410 1.0328 9 6 1.8114 -5.7624 1.7591 10 6 1.7554 -6.9542 1.0248 11 6 1.6770 -8.2967 1.4719 12 6 1.6338 -9.3025 0.5571 13 7 1.6619 -9.0583 -0.7430 14 6 1.7332 -7.8372 -1.2216 15 6 1.7832 -6.7376 -0.3607 16 16 1.8729 -5.0116 -0.6830 17 6 2.0285 -2.2649 -0.6952 18 6 2.0861 -0.8083 -1.2020 19 1 1.4524 -0.6799 -2.0793 20 7 3.4666 -0.4162 -1.4960 21 6 4.0066 -0.6815 -2.7262 22 1 3.4148 -1.1803 -3.4795 23 6 5.3145 -0.3095 -3.0050 24 7 6.0360 0.2979 -2.0868 25 14 6.0508 -0.6708 -4.6833 26 1 5.0414 -1.3568 -5.5294 27 1 6.4567 0.6026 -5.3304 28 1 7.2397 -1.5462 -4.5242 29 1 -0.3634 0.4757 0.9109 30 1 -0.3634 0.5511 -0.8674 31 1 -0.3634 -1.0267 -0.0435 32 1 3.1643 1.4029 -0.0435 33 1 1.6902 1.9654 -0.8673 34 1 1.7606 1.9385 0.9110 35 1 1.4672 -0.6454 2.0839 36 1 3.1182 -0.5229 1.4026 37 1 1.8001 -5.7498 2.8390 38 1 1.6519 -8.5190 2.5286 39 1 1.5745 -10.3248 0.9001 40 1 1.7543 -7.6815 -2.2900 41 1 2.9063 -2.8120 -1.0391 42 1 1.1218 -2.7484 -1.0590 43 1 3.9983 0.0315 -0.8194 44 1 6.9500 0.5576 -2.2815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995886597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:34 Heat of formation + Delta-G solvation = 23.336168 kcal Electronic energy + Delta-G solvation = -27794.149888 eV Core-core repulsion = 24030.546295 eV Total energy + Delta-G solvation = -3763.603593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64102 -41.32514 -39.51499 -37.10036 -35.79247 -34.75526 -32.64459 -32.47545 -31.61349 -29.59044 -28.19086 -27.99304 -26.02452 -25.48214 -24.89429 -23.27485 -22.46186 -20.75974 -20.26845 -19.19834 -19.07314 -17.94162 -17.63193 -17.31579 -17.10176 -16.63924 -16.24749 -15.85730 -15.59584 -15.49064 -15.39766 -15.00894 -14.88180 -14.69667 -14.41477 -14.16659 -13.76129 -13.50984 -13.34132 -13.19104 -13.14309 -12.90479 -12.84233 -12.78585 -12.69302 -12.16243 -12.05306 -11.96705 -11.76017 -11.46581 -11.42287 -11.23689 -11.00579 -10.95681 -10.72318 -10.26425 -9.81826 -9.03768 -8.93211 -7.92194 -5.20762 -0.97446 -0.03567 0.20904 0.69299 0.79559 1.49890 1.51740 1.59989 1.73190 1.90114 2.57634 2.69533 3.10449 3.38220 3.43216 3.52858 3.60816 3.73687 3.78446 3.84874 3.85415 4.00194 4.24166 4.32227 4.39792 4.45728 4.51815 4.54027 4.59655 4.64660 4.73063 4.82886 4.88274 4.92697 4.97631 5.03641 5.07207 5.08875 5.17882 5.28411 5.38829 5.54161 5.56569 5.60634 6.27976 6.28867 6.80226 6.84570 7.37288 8.09095 8.32444 9.30965 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.003803 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.930893 B = 7360.158686 C = 9272.243808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 C -0.122 4.122 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.592 3.408 7 O -0.567 6.567 8 C -0.224 4.224 9 C -0.050 4.050 10 C -0.063 4.063 11 C -0.114 4.114 12 C 0.071 3.929 13 N -0.484 5.484 14 C 0.151 3.849 15 C -0.228 4.228 16 S 0.197 5.803 17 C 0.065 3.935 18 C 0.177 3.823 19 H 0.086 0.914 20 N -0.721 5.721 21 C -0.235 4.235 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.967 5.967 25 Si 0.963 3.037 26 H -0.261 1.261 27 H -0.298 1.298 28 H -0.302 1.302 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.192 0.808 40 H 0.181 0.819 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.376 0.624 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.249 -12.349 5.230 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.077 4.077 3 C -0.180 4.180 4 C -0.002 4.002 5 N -0.327 5.327 6 C 0.380 3.620 7 O -0.449 6.449 8 C -0.345 4.345 9 C -0.084 4.084 10 C -0.078 4.078 11 C -0.136 4.136 12 C -0.078 4.078 13 N -0.194 5.194 14 C -0.019 4.019 15 C -0.347 4.347 16 S 0.465 5.535 17 C -0.063 4.063 18 C 0.066 3.934 19 H 0.103 0.897 20 N -0.361 5.361 21 C -0.366 4.366 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.618 5.618 25 Si 0.793 3.207 26 H -0.185 1.185 27 H -0.225 1.225 28 H -0.229 1.229 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.182 0.818 38 H 0.189 0.811 39 H 0.209 0.791 40 H 0.198 0.802 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.211 0.789 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.212 -12.209 3.864 19.130 hybrid contribution 1.371 0.030 1.295 1.886 sum -12.842 -12.178 5.160 18.435 Atomic orbital electron populations 1.21670 0.91094 1.02183 1.03259 1.21982 0.97296 0.95348 0.93055 1.21539 1.00460 0.93776 1.02216 1.22370 1.00548 0.78905 0.98336 1.48301 1.70151 1.06466 1.07806 1.16980 0.76800 0.82913 0.85278 1.90762 1.53453 1.85996 1.14671 1.23857 1.14255 0.97037 0.99310 1.20247 0.96916 0.88923 1.02280 1.18523 1.02279 0.95298 0.91692 1.22134 0.98528 0.89551 1.03386 1.22712 0.96263 1.01322 0.87498 1.67755 1.11870 1.22273 1.17452 1.22656 0.93693 0.85209 1.00329 1.24804 1.09266 1.01798 0.98784 1.84874 1.73690 0.94121 1.00822 1.23325 1.01743 1.02702 0.78481 1.21400 0.86741 0.89123 0.96133 0.89663 1.42650 1.09961 1.69699 1.13749 1.19662 0.95344 1.30203 0.91422 0.89779 1.25434 0.97736 1.02088 1.00829 1.69814 1.09414 1.47564 1.34961 0.85228 0.78218 0.76736 0.80532 1.18481 1.22519 1.22944 0.91075 0.90767 0.92712 0.94073 0.91881 0.91055 0.89722 0.93038 0.81830 0.81118 0.79126 0.80239 0.91490 0.89365 0.78935 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 8.60 71.98 0.62 -2.07 16 2 C -0.08 -2.12 0.83 -50.79 -0.04 -2.17 16 3 C -0.12 -3.54 8.35 71.98 0.60 -2.94 16 4 C 0.12 3.80 5.81 86.86 0.50 4.31 16 5 N -0.60 -19.59 3.31 -815.93 -2.70 -22.30 16 6 C 0.59 20.29 7.83 86.60 0.68 20.97 16 7 O -0.57 -22.09 16.98 -4.09 -0.07 -22.16 16 8 C -0.22 -6.58 6.27 23.61 0.15 -6.43 16 9 C -0.05 -1.28 9.81 21.71 0.21 -1.07 16 10 C -0.06 -1.44 5.91 -21.48 -0.13 -1.57 16 11 C -0.11 -1.93 10.13 22.62 0.23 -1.70 16 12 C 0.07 1.18 11.06 84.11 0.93 2.11 16 13 N -0.48 -10.28 10.34 -196.34 -2.03 -12.31 16 14 C 0.15 3.23 11.24 85.13 0.96 4.19 16 15 C -0.23 -5.44 6.54 23.12 0.15 -5.29 16 16 S 0.20 5.08 18.47 -56.49 -1.04 4.04 16 17 C 0.06 2.05 4.51 86.73 0.39 2.44 16 18 C 0.18 5.98 2.87 46.18 0.13 6.11 16 19 H 0.09 2.73 8.03 -2.39 -0.02 2.71 16 20 N -0.72 -32.20 4.59 -317.33 -1.46 -33.66 16 21 C -0.23 -11.73 9.98 84.03 0.84 -10.89 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 24 N -0.97 -56.54 13.06 21.65 0.28 -56.26 16 25 Si 0.96 43.87 29.55 68.60 2.03 45.90 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.18 7.81 -2.39 -0.02 1.16 16 32 H 0.04 1.48 6.17 -2.39 -0.01 1.46 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 2.50 7.95 -2.39 -0.02 2.48 16 36 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 37 H 0.16 3.82 7.96 -2.91 -0.02 3.79 16 38 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.07 2.46 6.86 -2.39 -0.02 2.44 16 42 H 0.09 2.37 6.78 -2.39 -0.02 2.35 16 43 H 0.38 18.59 6.02 -92.71 -0.56 18.03 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -66.50 371.37 2.17 -64.32 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.47 Total: 29.64 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.69 Total: 2.78 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -5.91 Total: -124.53 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.04 Total: 4.04 kcal Total: -66.50 2.17 -64.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995886597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.659 kcal (2) G-P(sol) polarization free energy of solvation -66.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds