Wall clock time and date at job start Wed Apr 1 2020 03:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.88700 * 2 1 4 4 C 1.55124 * 111.19403 * 236.06720 * 2 1 3 5 5 N 1.47429 * 104.72488 * 279.19170 * 4 2 1 6 6 C 1.34774 * 125.65147 * 155.81400 * 5 4 2 7 7 O 1.21651 * 119.99802 * 359.72053 * 6 5 4 8 8 C 1.46981 * 119.99936 * 179.72013 * 6 5 4 9 9 C 1.33674 * 124.63506 * 180.02562 * 8 6 5 10 10 C 1.40326 * 115.50607 * 179.97438 * 9 8 6 11 11 C 1.41637 * 129.15344 * 179.97438 * 10 9 8 12 12 C 1.36529 * 118.85899 * 179.97438 * 11 10 9 13 13 C 1.38774 * 119.72292 * 0.02562 * 12 11 10 14 14 N 1.31285 * 121.07552 * 0.03462 * 13 12 11 15 15 C 1.33432 * 121.97937 * 359.92539 * 14 13 12 16 16 S 1.75470 * 124.64204 * 359.97438 * 8 6 5 17 17 C 1.47022 * 108.69948 * 335.55269 * 5 4 2 18 18 C 1.54326 * 107.27321 * 1.28589 * 17 5 4 19 19 H 1.08998 * 110.72035 * 140.55347 * 18 17 5 20 20 N 1.46497 * 110.71837 * 263.65452 * 18 17 5 21 21 C 1.36940 * 120.00075 * 273.54107 * 20 18 17 22 22 H 1.08007 * 119.99606 * 0.02562 * 21 20 18 23 23 C 1.38804 * 120.00285 * 179.97438 * 21 20 18 24 24 N 1.31621 * 120.00147 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99989 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47255 * 89.99816 * 25 23 21 27 27 H 1.48504 * 109.47330 * 209.99559 * 25 23 21 28 28 H 1.48498 * 109.46877 * 329.99651 * 25 23 21 29 29 H 1.08998 * 109.47304 * 296.11983 * 1 2 3 30 30 H 1.09000 * 109.47114 * 56.12210 * 1 2 3 31 31 H 1.09004 * 109.47571 * 176.12321 * 1 2 3 32 32 H 1.09001 * 109.47033 * 183.88170 * 3 2 1 33 33 H 1.08999 * 109.46945 * 303.87662 * 3 2 1 34 34 H 1.09003 * 109.47054 * 63.88040 * 3 2 1 35 35 H 1.09002 * 110.50148 * 160.35103 * 4 2 1 36 36 H 1.09003 * 110.34257 * 37.95668 * 4 2 1 37 37 H 1.07998 * 122.25187 * 359.72433 * 9 8 6 38 38 H 1.08001 * 120.56883 * 0.02562 * 11 10 9 39 39 H 1.07995 * 120.13655 * 180.02562 * 12 11 10 40 40 H 1.07991 * 119.46131 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.88449 * 120.70101 * 17 5 4 42 42 H 1.08993 * 109.88395 * 241.86825 * 17 5 4 43 43 H 0.97003 * 120.00333 * 93.54680 * 20 18 17 44 44 H 0.97001 * 120.00146 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7725 6 6 1.9471 -3.2835 -1.5927 7 8 1.9420 -3.1243 -2.7988 8 6 1.8804 -4.6397 -1.0301 9 6 1.8123 -5.7606 -1.7553 10 6 1.7569 -6.9541 -1.0193 11 6 1.6797 -8.2893 -1.4853 12 6 1.6365 -9.3042 -0.5730 13 6 1.6680 -9.0120 0.7833 14 7 1.7384 -7.7717 1.2078 15 6 1.7842 -6.7379 0.3654 16 16 1.8807 -5.0091 0.6853 17 6 2.0285 -2.2644 0.6969 18 6 2.0861 -0.8075 1.2026 19 1 1.4523 -0.6784 2.0799 20 7 3.4662 -0.4164 1.5003 21 6 4.0022 -0.6812 2.7323 22 1 3.4076 -1.1787 3.4843 23 6 5.3100 -0.3112 3.0143 24 7 5.8250 -0.5652 4.1986 25 14 6.3385 0.5487 1.7135 26 1 6.1597 2.0180 1.8326 27 1 7.7704 0.2069 1.9089 28 1 5.9031 0.1047 0.3650 29 1 -0.3634 0.4524 0.9227 30 1 -0.3633 0.5728 -0.8532 31 1 -0.3634 -1.0253 -0.0695 32 1 3.1629 1.4034 -0.0696 33 1 1.6698 1.9731 -0.8532 34 1 1.7823 1.9302 0.9227 35 1 3.1253 -0.5272 -1.3985 36 1 1.4764 -0.6456 -2.0858 37 1 1.7968 -5.7483 -2.8351 38 1 1.6564 -8.5011 -2.5441 39 1 1.5779 -10.3300 -0.9055 40 1 1.6332 -9.8180 1.5012 41 1 1.1218 -2.7475 1.0610 42 1 2.9062 -2.8112 1.0412 43 1 4.0003 0.0302 0.8249 44 1 6.7390 -0.3070 4.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996482931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:18 Heat of formation + Delta-G solvation = 43.734714 kcal Electronic energy + Delta-G solvation = -27872.901000 eV Core-core repulsion = 24110.181955 eV Total energy + Delta-G solvation = -3762.719045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.58378 -40.21234 -38.25128 -35.80319 -34.19660 -33.42447 -32.56911 -31.17602 -30.06565 -28.44911 -27.04371 -26.85689 -24.76854 -24.15313 -23.65892 -21.77669 -21.31237 -19.64699 -19.17861 -18.05140 -17.69191 -17.30310 -16.51428 -16.03049 -15.68921 -15.28598 -15.07516 -14.81107 -14.63022 -14.47614 -13.97532 -13.80019 -13.40961 -13.27755 -13.17403 -12.80414 -12.60989 -12.45814 -12.26948 -12.19662 -11.96098 -11.90063 -11.65800 -11.41551 -11.05025 -11.01585 -10.70563 -10.64303 -10.54383 -10.36081 -10.10286 -9.96829 -9.66261 -9.61283 -9.08684 -8.90643 -8.58642 -8.05972 -7.44187 -5.88105 -3.26050 0.04550 0.86932 1.14132 1.75311 1.77458 2.96832 3.12027 3.29878 3.32030 3.39137 3.50182 4.19811 4.34218 4.44324 4.48849 4.61573 4.67183 4.79739 4.83819 4.96714 5.03505 5.16784 5.28933 5.41944 5.43114 5.48260 5.53904 5.60411 5.72011 5.74902 5.83348 5.85624 5.93120 5.96187 6.00570 6.06202 6.13397 6.15843 6.28680 6.32806 6.39100 6.54310 6.59636 7.54403 7.54748 7.85522 8.09773 8.30177 9.06500 9.78796 9.96332 11.29320 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003700 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.883747 B = 7565.026277 C = 8876.377679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.127 4.127 4 C 0.121 3.879 5 N -0.599 5.599 6 C 0.599 3.401 7 O -0.538 6.538 8 C -0.219 4.219 9 C -0.048 4.048 10 C -0.136 4.136 11 C -0.026 4.026 12 C -0.183 4.183 13 C 0.139 3.861 14 N -0.455 5.455 15 C 0.034 3.966 16 S 0.225 5.775 17 C 0.053 3.947 18 C 0.192 3.808 19 H 0.084 0.916 20 N -0.735 5.735 21 C -0.254 4.254 22 H 0.094 0.906 23 C 0.014 3.986 24 N -0.926 5.926 25 Si 0.877 3.123 26 H -0.281 1.281 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.364 0.636 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.152 -11.196 -11.022 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 C -0.185 4.185 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.386 3.614 7 O -0.418 6.418 8 C -0.338 4.338 9 C -0.081 4.081 10 C -0.147 4.147 11 C -0.053 4.053 12 C -0.205 4.205 13 C -0.033 4.033 14 N -0.165 5.165 15 C -0.209 4.209 16 S 0.493 5.507 17 C -0.075 4.075 18 C 0.080 3.920 19 H 0.102 0.898 20 N -0.377 5.377 21 C -0.383 4.383 22 H 0.112 0.888 23 C -0.183 4.183 24 N -0.572 5.572 25 Si 0.707 3.293 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.204 1.204 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.182 0.818 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.199 0.801 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.982 -9.993 -9.214 18.120 hybrid contribution 0.977 -0.783 -2.914 3.172 sum -11.006 -10.776 -12.128 19.605 Atomic orbital electron populations 1.21681 0.93275 1.01811 1.02013 1.22104 0.95948 0.95939 0.95282 1.21603 1.01219 0.93797 1.01881 1.22390 1.01191 0.79107 0.97455 1.48262 1.70839 1.06199 1.07768 1.16594 0.77230 0.82037 0.85496 1.90796 1.52031 1.85445 1.13511 1.23850 1.13778 0.97727 0.98439 1.19975 0.97510 0.89013 1.01606 1.19027 1.07294 0.94985 0.93444 1.21250 0.93305 0.90153 1.00627 1.21692 1.03867 1.00487 0.94484 1.22938 0.92867 0.92984 0.94524 1.67342 1.12529 0.98701 1.37904 1.24717 1.02652 1.01237 0.92283 1.85357 1.73168 0.91481 1.00740 1.23507 1.02040 1.03451 0.78487 1.21122 0.87921 0.88124 0.94858 0.89813 1.42831 1.09491 1.70947 1.14412 1.19040 0.96491 1.33555 0.89218 0.88803 1.24637 0.96869 1.00512 0.96246 1.69688 1.15403 1.51700 1.20456 0.86677 0.80621 0.80107 0.81869 1.20780 1.21580 1.20357 0.91857 0.92524 0.92657 0.92216 0.92990 0.91391 0.91168 0.90437 0.82750 0.84250 0.84092 0.81764 0.91376 0.89098 0.80117 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.58 37.15 0.32 -1.19 16 2 C -0.09 -1.28 0.84 -152.24 -0.13 -1.40 16 3 C -0.13 -1.74 8.22 37.16 0.31 -1.43 16 4 C 0.12 1.83 5.83 -2.41 -0.01 1.81 16 5 N -0.60 -9.73 3.31 -171.81 -0.57 -10.29 16 6 C 0.60 10.14 7.82 -12.72 -0.10 10.04 16 7 O -0.54 -10.18 16.97 5.23 0.09 -10.10 16 8 C -0.22 -3.31 6.26 -37.64 -0.24 -3.55 16 9 C -0.05 -0.64 9.80 -40.40 -0.40 -1.04 16 10 C -0.14 -1.74 5.88 -107.09 -0.63 -2.37 16 11 C -0.03 -0.24 10.16 -38.90 -0.40 -0.64 16 12 C -0.18 -1.48 10.01 -40.00 -0.40 -1.88 16 13 C 0.14 1.37 11.18 -17.59 -0.20 1.17 16 14 N -0.45 -6.28 10.39 -11.65 -0.12 -6.40 16 15 C 0.03 0.49 7.66 -16.13 -0.12 0.37 16 16 S 0.22 3.33 18.46 -107.50 -1.98 1.35 16 17 C 0.05 0.86 4.57 -3.06 -0.01 0.85 16 18 C 0.19 3.27 2.86 -66.09 -0.19 3.08 16 19 H 0.08 1.41 8.02 -51.93 -0.42 1.00 16 20 N -0.73 -15.68 4.42 -51.65 -0.23 -15.90 16 21 C -0.25 -6.58 10.46 -15.06 -0.16 -6.74 16 22 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 23 C 0.01 0.40 5.50 -17.43 -0.10 0.30 16 24 N -0.93 -27.87 13.97 55.49 0.78 -27.09 16 25 Si 0.88 21.22 27.74 -169.99 -4.71 16.51 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.65 7.91 -51.93 -0.41 0.24 16 32 H 0.06 0.91 6.39 -51.93 -0.33 0.58 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.14 7.99 -51.93 -0.41 0.72 16 36 H 0.08 1.11 7.95 -51.93 -0.41 0.69 16 37 H 0.15 1.85 7.96 -52.49 -0.42 1.43 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.07 0.99 6.79 -51.93 -0.35 0.64 16 42 H 0.09 1.70 6.84 -51.93 -0.36 1.34 16 43 H 0.36 7.80 3.98 -40.82 -0.16 7.64 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -32.56 368.56 -9.47 -42.04 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.83 Total: 6.95 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.45 Total: -2.61 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.14 Total: -59.69 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.98 Total: 1.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.56 -9.47 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996482931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.772 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds