Wall clock time and date at job start Wed Apr 1 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.88700 * 2 1 4 4 C 1.55124 * 111.19403 * 236.06720 * 2 1 3 5 5 N 1.47429 * 104.72488 * 279.19170 * 4 2 1 6 6 C 1.34774 * 125.65147 * 155.81400 * 5 4 2 7 7 O 1.21651 * 119.99802 * 359.72053 * 6 5 4 8 8 C 1.46981 * 119.99936 * 179.72013 * 6 5 4 9 9 C 1.33674 * 124.63506 * 180.02562 * 8 6 5 10 10 C 1.40326 * 115.50607 * 179.97438 * 9 8 6 11 11 C 1.41637 * 129.15344 * 179.97438 * 10 9 8 12 12 C 1.36529 * 118.85899 * 179.97438 * 11 10 9 13 13 C 1.38774 * 119.72292 * 0.02562 * 12 11 10 14 14 N 1.31285 * 121.07552 * 0.03462 * 13 12 11 15 15 C 1.33432 * 121.97937 * 359.92539 * 14 13 12 16 16 S 1.75470 * 124.64204 * 359.97438 * 8 6 5 17 17 C 1.47022 * 108.69948 * 335.55269 * 5 4 2 18 18 C 1.54326 * 107.27321 * 1.28589 * 17 5 4 19 19 H 1.08998 * 110.72035 * 140.55347 * 18 17 5 20 20 N 1.46497 * 110.71837 * 263.65452 * 18 17 5 21 21 C 1.36940 * 120.00075 * 273.54107 * 20 18 17 22 22 H 1.08007 * 119.99606 * 0.02562 * 21 20 18 23 23 C 1.38804 * 120.00285 * 179.97438 * 21 20 18 24 24 N 1.31621 * 120.00147 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99989 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47255 * 89.99816 * 25 23 21 27 27 H 1.48504 * 109.47330 * 209.99559 * 25 23 21 28 28 H 1.48498 * 109.46877 * 329.99651 * 25 23 21 29 29 H 1.08998 * 109.47304 * 296.11983 * 1 2 3 30 30 H 1.09000 * 109.47114 * 56.12210 * 1 2 3 31 31 H 1.09004 * 109.47571 * 176.12321 * 1 2 3 32 32 H 1.09001 * 109.47033 * 183.88170 * 3 2 1 33 33 H 1.08999 * 109.46945 * 303.87662 * 3 2 1 34 34 H 1.09003 * 109.47054 * 63.88040 * 3 2 1 35 35 H 1.09002 * 110.50148 * 160.35103 * 4 2 1 36 36 H 1.09003 * 110.34257 * 37.95668 * 4 2 1 37 37 H 1.07998 * 122.25187 * 359.72433 * 9 8 6 38 38 H 1.08001 * 120.56883 * 0.02562 * 11 10 9 39 39 H 1.07995 * 120.13655 * 180.02562 * 12 11 10 40 40 H 1.07991 * 119.46131 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.88449 * 120.70101 * 17 5 4 42 42 H 1.08993 * 109.88395 * 241.86825 * 17 5 4 43 43 H 0.97003 * 120.00333 * 93.54680 * 20 18 17 44 44 H 0.97001 * 120.00146 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7725 6 6 1.9471 -3.2835 -1.5927 7 8 1.9420 -3.1243 -2.7988 8 6 1.8804 -4.6397 -1.0301 9 6 1.8123 -5.7606 -1.7553 10 6 1.7569 -6.9541 -1.0193 11 6 1.6797 -8.2893 -1.4853 12 6 1.6365 -9.3042 -0.5730 13 6 1.6680 -9.0120 0.7833 14 7 1.7384 -7.7717 1.2078 15 6 1.7842 -6.7379 0.3654 16 16 1.8807 -5.0091 0.6853 17 6 2.0285 -2.2644 0.6969 18 6 2.0861 -0.8075 1.2026 19 1 1.4523 -0.6784 2.0799 20 7 3.4662 -0.4164 1.5003 21 6 4.0022 -0.6812 2.7323 22 1 3.4076 -1.1787 3.4843 23 6 5.3100 -0.3112 3.0143 24 7 5.8250 -0.5652 4.1986 25 14 6.3385 0.5487 1.7135 26 1 6.1597 2.0180 1.8326 27 1 7.7704 0.2069 1.9089 28 1 5.9031 0.1047 0.3650 29 1 -0.3634 0.4524 0.9227 30 1 -0.3633 0.5728 -0.8532 31 1 -0.3634 -1.0253 -0.0695 32 1 3.1629 1.4034 -0.0696 33 1 1.6698 1.9731 -0.8532 34 1 1.7823 1.9302 0.9227 35 1 3.1253 -0.5272 -1.3985 36 1 1.4764 -0.6456 -2.0858 37 1 1.7968 -5.7483 -2.8351 38 1 1.6564 -8.5011 -2.5441 39 1 1.5779 -10.3300 -0.9055 40 1 1.6332 -9.8180 1.5012 41 1 1.1218 -2.7475 1.0610 42 1 2.9062 -2.8112 1.0412 43 1 4.0003 0.0302 0.8249 44 1 6.7390 -0.3070 4.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996482931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:17 Heat of formation + Delta-G solvation = 22.843537 kcal Electronic energy + Delta-G solvation = -27873.806910 eV Core-core repulsion = 24110.181955 eV Total energy + Delta-G solvation = -3763.624955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65389 -41.32205 -39.54864 -36.81650 -35.90915 -34.77715 -33.37423 -33.07781 -31.04706 -29.90369 -28.16662 -27.98412 -25.92702 -25.35956 -24.93845 -23.17173 -22.43577 -20.80862 -20.56841 -19.44495 -19.12186 -18.35793 -17.65334 -17.31007 -16.64237 -16.51162 -16.42106 -16.06506 -15.98282 -15.63742 -15.31860 -15.07147 -14.65849 -14.61600 -14.21812 -14.10877 -13.81335 -13.70058 -13.49174 -13.30281 -13.24777 -12.94621 -12.90653 -12.82477 -12.70574 -12.27933 -12.10776 -11.97012 -11.87969 -11.64178 -11.43326 -11.38219 -11.27407 -11.02402 -10.47981 -10.00235 -9.77046 -9.37634 -9.13675 -8.02482 -5.36307 -0.92510 0.06195 0.09818 0.71232 0.78354 1.35286 1.37214 1.43439 1.73143 1.90056 2.46066 2.65904 3.09307 3.25815 3.41053 3.47187 3.56286 3.60036 3.69287 3.83792 3.92944 3.99791 4.17919 4.30504 4.33998 4.40782 4.48343 4.51323 4.59859 4.67234 4.76698 4.79148 4.87017 4.90854 5.00046 5.00820 5.05433 5.10635 5.16082 5.23237 5.36249 5.49039 5.57828 5.78436 6.21083 6.24269 6.70332 6.80107 7.06248 7.80552 7.98506 9.18486 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003700 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.883747 B = 7565.026277 C = 8876.377679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 C -0.127 4.127 4 C 0.117 3.883 5 N -0.600 5.600 6 C 0.599 3.401 7 O -0.563 6.563 8 C -0.244 4.244 9 C -0.028 4.028 10 C -0.153 4.153 11 C -0.023 4.023 12 C -0.167 4.167 13 C 0.141 3.859 14 N -0.497 5.497 15 C 0.020 3.980 16 S 0.179 5.821 17 C 0.066 3.934 18 C 0.181 3.819 19 H 0.086 0.914 20 N -0.737 5.737 21 C -0.225 4.225 22 H 0.067 0.933 23 C -0.053 4.053 24 N -0.978 5.978 25 Si 0.938 3.062 26 H -0.272 1.272 27 H -0.301 1.301 28 H -0.261 1.261 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.169 0.831 38 H 0.176 0.824 39 H 0.189 0.811 40 H 0.199 0.801 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.366 0.634 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 -12.955 -13.652 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.078 4.078 3 C -0.184 4.184 4 C -0.005 4.005 5 N -0.331 5.331 6 C 0.388 3.612 7 O -0.445 6.445 8 C -0.363 4.363 9 C -0.062 4.062 10 C -0.164 4.164 11 C -0.050 4.050 12 C -0.189 4.189 13 C -0.030 4.030 14 N -0.208 5.208 15 C -0.222 4.222 16 S 0.446 5.554 17 C -0.062 4.062 18 C 0.071 3.929 19 H 0.104 0.896 20 N -0.379 5.379 21 C -0.356 4.356 22 H 0.085 0.915 23 C -0.245 4.245 24 N -0.629 5.629 25 Si 0.767 3.233 26 H -0.198 1.198 27 H -0.228 1.228 28 H -0.186 1.186 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.187 0.813 38 H 0.193 0.807 39 H 0.206 0.794 40 H 0.216 0.784 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.201 0.799 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.615 -11.748 -11.883 21.554 hybrid contribution 1.339 -0.560 -2.090 2.544 sum -12.276 -12.307 -13.973 22.303 Atomic orbital electron populations 1.21664 0.90905 1.02160 1.03515 1.22073 0.97595 0.95551 0.92608 1.21611 1.00094 0.93595 1.03129 1.22492 1.00862 0.78689 0.98429 1.48300 1.70630 1.06696 1.07475 1.16814 0.76533 0.82685 0.85216 1.90764 1.53507 1.85958 1.14307 1.23644 1.16980 0.97404 0.98294 1.20231 0.94873 0.88864 1.02196 1.19252 1.08263 0.96351 0.92546 1.21761 0.91736 0.88617 1.02877 1.22213 1.01012 1.02415 0.93237 1.23718 0.90403 0.92285 0.96617 1.67328 1.14681 0.99993 1.38822 1.24620 1.03771 1.00575 0.93271 1.85267 1.74637 0.93904 1.01602 1.23206 1.01758 1.02362 0.78824 1.21384 0.85807 0.89190 0.96553 0.89637 1.42786 1.11236 1.71129 1.12788 1.19014 0.95869 1.30638 0.90099 0.91484 1.25314 0.98403 1.02582 0.98183 1.69853 1.15617 1.54531 1.22849 0.85670 0.78139 0.79401 0.80122 1.19778 1.22816 1.18618 0.90878 0.90418 0.93014 0.94080 0.90052 0.91576 0.92414 0.89130 0.81321 0.80696 0.79419 0.78385 0.89735 0.91761 0.79927 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.58 71.98 0.62 -1.99 16 2 C -0.08 -2.05 0.84 -50.71 -0.04 -2.09 16 3 C -0.13 -3.22 8.22 71.98 0.59 -2.63 16 4 C 0.12 3.45 5.83 86.93 0.51 3.95 16 5 N -0.60 -19.58 3.31 -815.72 -2.70 -22.28 16 6 C 0.60 20.43 7.82 86.53 0.68 21.11 16 7 O -0.56 -21.23 16.97 -4.19 -0.07 -21.30 16 8 C -0.24 -7.52 6.26 23.53 0.15 -7.38 16 9 C -0.03 -0.74 9.80 21.74 0.21 -0.52 16 10 C -0.15 -3.67 5.88 -21.46 -0.13 -3.80 16 11 C -0.02 -0.34 10.16 22.71 0.23 -0.11 16 12 C -0.17 -1.92 10.01 22.00 0.22 -1.70 16 13 C 0.14 2.33 11.18 84.90 0.95 3.28 16 14 N -0.50 -13.30 10.39 -190.76 -1.98 -15.28 16 15 C 0.02 0.57 7.66 84.92 0.65 1.22 16 16 S 0.18 5.57 18.46 -56.49 -1.04 4.53 16 17 C 0.07 2.20 4.57 86.73 0.40 2.60 16 18 C 0.18 6.19 2.86 46.18 0.13 6.32 16 19 H 0.09 2.90 8.02 -2.39 -0.02 2.89 16 20 N -0.74 -31.81 4.42 -317.33 -1.40 -33.21 16 21 C -0.23 -12.07 10.46 84.03 0.88 -11.19 16 22 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 23 C -0.05 -3.01 5.50 84.86 0.47 -2.55 16 24 N -0.98 -61.32 13.97 21.65 0.30 -61.01 16 25 Si 0.94 44.79 27.74 68.60 1.90 46.69 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 28 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.13 7.91 -2.39 -0.02 1.11 16 32 H 0.04 1.20 6.39 -2.39 -0.02 1.18 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.84 7.99 -2.39 -0.02 1.82 16 36 H 0.09 2.44 7.95 -2.39 -0.02 2.42 16 37 H 0.17 3.78 7.96 -2.91 -0.02 3.76 16 38 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.19 0.45 8.06 -2.91 -0.02 0.42 16 40 H 0.20 1.71 8.06 -2.92 -0.02 1.69 16 41 H 0.08 2.55 6.79 -2.39 -0.02 2.54 16 42 H 0.06 2.54 6.84 -2.39 -0.02 2.52 16 43 H 0.37 15.61 3.98 -92.71 -0.37 15.25 16 44 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -74.79 368.56 2.12 -72.67 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.60 Total: 24.67 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 6.51 Total: 4.52 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -5.78 Total: -131.78 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.07 Total: -21.30 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.04 Total: 4.53 kcal Total: -74.79 2.12 -72.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996482931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.517 kcal (2) G-P(sol) polarization free energy of solvation -74.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds