Wall clock time and date at job start Wed Apr 1 2020 03:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.88469 * 2 1 4 4 C 1.55133 * 111.19351 * 236.07522 * 2 1 3 5 5 N 1.47422 * 104.71865 * 279.18902 * 4 2 1 6 6 C 1.34777 * 125.64861 * 155.81965 * 5 4 2 7 7 O 1.21590 * 119.99676 * 4.97156 * 6 5 4 8 8 C 1.47586 * 120.00340 * 184.69674 * 6 5 4 9 9 C 1.40196 * 120.12972 * 172.30437 * 8 6 5 10 10 C 1.35742 * 120.61632 * 179.97438 * 9 8 6 11 11 C 1.41252 * 120.63597 * 0.05011 * 10 9 8 12 12 N 1.34415 * 129.47915 * 180.02562 * 11 10 9 13 13 C 1.28060 * 117.91291 * 179.97438 * 12 11 10 14 14 S 1.70642 * 111.51644 * 359.97438 * 13 12 11 15 15 C 1.40137 * 118.74222 * 359.97200 * 11 10 9 16 16 C 1.38918 * 120.41334 * 359.70650 * 15 11 10 17 17 C 1.47022 * 108.70312 * 335.54886 * 5 4 2 18 18 C 1.54324 * 107.27155 * 1.29215 * 17 5 4 19 19 H 1.08997 * 110.71751 * 140.55333 * 18 17 5 20 20 N 1.46502 * 110.71861 * 263.82642 * 18 17 5 21 21 C 1.36939 * 119.99981 * 273.54876 * 20 18 17 22 22 H 1.07989 * 120.00092 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99802 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99947 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99983 * 359.97438 * 23 21 20 26 26 H 1.48492 * 109.47143 * 90.00442 * 25 23 21 27 27 H 1.48500 * 109.47026 * 210.00347 * 25 23 21 28 28 H 1.48499 * 109.47386 * 329.99999 * 25 23 21 29 29 H 1.08999 * 109.47231 * 296.11257 * 1 2 3 30 30 H 1.09001 * 109.47819 * 56.11874 * 1 2 3 31 31 H 1.09008 * 109.47040 * 176.11886 * 1 2 3 32 32 H 1.09003 * 109.47652 * 183.87866 * 3 2 1 33 33 H 1.08999 * 109.47441 * 303.88837 * 3 2 1 34 34 H 1.09007 * 109.46665 * 63.88835 * 3 2 1 35 35 H 1.08993 * 110.49766 * 160.34510 * 4 2 1 36 36 H 1.09001 * 110.34212 * 37.95323 * 4 2 1 37 37 H 1.07995 * 119.68924 * 0.02562 * 9 8 6 38 38 H 1.08002 * 119.68303 * 180.02562 * 10 9 8 39 39 H 1.08005 * 124.23950 * 180.02562 * 13 12 11 40 40 H 1.08000 * 120.07799 * 180.32014 * 16 15 11 41 41 H 1.09001 * 109.88163 * 120.70622 * 17 5 4 42 42 H 1.09003 * 109.88345 * 241.71515 * 17 5 4 43 43 H 0.96996 * 119.99962 * 93.54286 * 20 18 17 44 44 H 0.96999 * 119.99866 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0908 -0.8072 -1.2002 5 7 2.0139 -2.2160 -0.7727 6 6 1.9472 -3.2833 -1.5931 7 8 2.0383 -3.1320 -2.7961 8 6 1.7696 -4.6363 -1.0309 9 6 1.5386 -5.7268 -1.8810 10 6 1.3744 -6.9755 -1.3747 11 6 1.4321 -7.2006 0.0186 12 7 1.2965 -8.3481 0.7053 13 6 1.3904 -8.2978 1.9815 14 16 1.6799 -6.7065 2.5254 15 6 1.6626 -6.1103 0.8683 16 6 1.8366 -4.8353 0.3450 17 6 2.0286 -2.2643 0.6966 18 6 2.0862 -0.8075 1.2024 19 1 1.4524 -0.6786 2.0798 20 7 3.4667 -0.4150 1.4962 21 6 4.0067 -0.6795 2.7266 22 1 3.4147 -1.1771 3.4803 23 6 5.3145 -0.3072 3.0051 24 7 5.8337 -0.5619 4.1874 25 14 6.3382 0.5542 1.7014 26 1 6.1573 2.0232 1.8207 27 1 7.7712 0.2148 1.8930 28 1 5.9001 0.1093 0.3541 29 1 -0.3633 0.4523 0.9228 30 1 -0.3635 0.5729 -0.8531 31 1 -0.3633 -1.0254 -0.0696 32 1 3.1629 1.4035 -0.0695 33 1 1.6696 1.9733 -0.8531 34 1 1.7822 1.9302 0.9229 35 1 3.1252 -0.5269 -1.3987 36 1 1.4764 -0.6454 -2.0859 37 1 1.4916 -5.5721 -2.9488 38 1 1.1976 -7.8049 -2.0435 39 1 1.2988 -9.1552 2.6318 40 1 2.0191 -3.9998 1.0045 41 1 1.1220 -2.7476 1.0608 42 1 2.9050 -2.8136 1.0407 43 1 3.9983 0.0322 0.8193 44 1 6.7475 -0.3013 4.3822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996583731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:01 Heat of formation + Delta-G solvation = 49.997303 kcal Electronic energy + Delta-G solvation = -28227.411259 eV Core-core repulsion = 24464.963779 eV Total energy + Delta-G solvation = -3762.447479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.06530 -41.07798 -39.49622 -37.65977 -35.91462 -34.89876 -33.08232 -32.32902 -31.28754 -29.94438 -28.12712 -27.85031 -26.22047 -25.68759 -24.36566 -23.22801 -22.54674 -21.29065 -20.58860 -19.45055 -19.15467 -18.41254 -17.68280 -17.29463 -16.76813 -16.45452 -16.43715 -16.07415 -15.85094 -15.60769 -15.29961 -14.83599 -14.74816 -14.61124 -14.47160 -14.13789 -13.76015 -13.68366 -13.54872 -13.31459 -13.16792 -12.98231 -12.89189 -12.79475 -12.68495 -12.26650 -12.02481 -11.94658 -11.69928 -11.61109 -11.34131 -11.29695 -11.20958 -10.96135 -10.70881 -9.98734 -9.71313 -9.32634 -9.24392 -8.01332 -5.34079 -0.98194 -0.00224 0.17164 0.65793 0.85973 1.36578 1.37611 1.43874 1.80550 1.84141 2.47081 2.60568 2.93036 3.18942 3.27021 3.40080 3.48749 3.62961 3.70703 3.93008 3.97451 4.07952 4.09908 4.22123 4.34727 4.39735 4.43696 4.55295 4.62264 4.68018 4.78173 4.84275 4.87895 4.91263 4.96831 5.04080 5.06434 5.09097 5.20972 5.26457 5.38059 5.46129 5.50180 5.80407 6.22651 6.35022 6.43915 6.93486 7.08171 7.83498 8.00636 9.19400 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.004053 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.812246 B = 6906.924837 C = 8434.721305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.127 4.127 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.571 3.429 7 O -0.573 6.573 8 C -0.129 4.129 9 C -0.054 4.054 10 C -0.075 4.075 11 C 0.089 3.911 12 N -0.496 5.496 13 C 0.084 3.916 14 S 0.137 5.863 15 C -0.217 4.217 16 C -0.066 4.066 17 C 0.068 3.932 18 C 0.173 3.827 19 H 0.088 0.912 20 N -0.739 5.739 21 C -0.222 4.222 22 H 0.072 0.928 23 C -0.051 4.051 24 N -0.977 5.977 25 Si 0.934 3.066 26 H -0.275 1.275 27 H -0.303 1.303 28 H -0.263 1.263 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.248 0.752 40 H 0.172 0.828 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.365 0.635 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.285 -9.437 -7.366 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.079 4.079 3 C -0.185 4.185 4 C -0.006 4.006 5 N -0.330 5.330 6 C 0.362 3.638 7 O -0.455 6.455 8 C -0.135 4.135 9 C -0.076 4.076 10 C -0.095 4.095 11 C -0.033 4.033 12 N -0.210 5.210 13 C -0.219 4.219 14 S 0.392 5.608 15 C -0.336 4.336 16 C -0.088 4.088 17 C -0.057 4.057 18 C 0.063 3.937 19 H 0.106 0.894 20 N -0.382 5.382 21 C -0.353 4.353 22 H 0.090 0.910 23 C -0.243 4.243 24 N -0.627 5.627 25 Si 0.763 3.237 26 H -0.201 1.201 27 H -0.230 1.230 28 H -0.188 1.188 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.180 0.820 39 H 0.264 0.736 40 H 0.189 0.811 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.199 0.801 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.185 -9.625 -7.001 18.517 hybrid contribution 1.429 0.424 -1.219 1.926 sum -12.756 -9.201 -8.220 17.746 Atomic orbital electron populations 1.21656 0.90941 1.02247 1.03353 1.22059 0.97530 0.95395 0.92912 1.21610 1.00007 0.93908 1.02966 1.22447 1.00533 0.79323 0.98293 1.48331 1.70665 1.06490 1.07487 1.17988 0.76517 0.84021 0.85321 1.90735 1.53190 1.86267 1.15323 1.19792 1.06657 0.93587 0.93513 1.20834 0.95422 0.90349 1.00984 1.20498 0.99999 0.97871 0.91179 1.19771 1.00984 0.86521 0.96008 1.66296 1.18740 1.28019 1.07912 1.29015 0.96730 1.02481 0.93712 1.84344 1.69926 1.03554 1.02974 1.24024 1.11773 0.99277 0.98548 1.22190 0.94571 0.96533 0.95497 1.23527 1.01293 1.01771 0.79108 1.21515 0.85653 0.89975 0.96511 0.89418 1.42823 1.11275 1.71212 1.12867 1.19028 0.95666 1.30405 0.90179 0.91014 1.25260 0.98448 1.02657 0.97976 1.69834 1.15506 1.54542 1.22854 0.85737 0.78235 0.79403 0.80327 1.20085 1.22996 1.18787 0.90905 0.90786 0.92735 0.94227 0.90361 0.91618 0.92871 0.89584 0.82858 0.82011 0.73601 0.81103 0.88863 0.91397 0.80071 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.58 71.98 0.62 -1.81 16 2 C -0.08 -1.96 0.83 -50.71 -0.04 -2.01 16 3 C -0.13 -3.16 8.22 71.98 0.59 -2.57 16 4 C 0.12 3.31 5.80 86.93 0.50 3.81 16 5 N -0.60 -18.28 3.31 -827.74 -2.74 -21.02 16 6 C 0.57 18.60 7.80 86.71 0.68 19.28 16 7 O -0.57 -21.39 16.66 -4.00 -0.07 -21.45 16 8 C -0.13 -3.72 5.87 -20.11 -0.12 -3.84 16 9 C -0.05 -1.35 9.49 22.17 0.21 -1.14 16 10 C -0.07 -1.72 10.03 22.43 0.23 -1.49 16 11 C 0.09 2.27 7.00 39.95 0.28 2.55 16 12 N -0.50 -11.45 10.56 -194.44 -2.05 -13.51 16 13 C 0.08 1.41 12.11 130.79 1.58 2.99 16 14 S 0.14 2.78 23.17 -56.49 -1.31 1.47 16 15 C -0.22 -5.67 6.54 22.89 0.15 -5.52 16 16 C -0.07 -1.84 8.62 22.66 0.20 -1.65 16 17 C 0.07 2.02 4.30 86.73 0.37 2.40 16 18 C 0.17 5.47 2.86 46.18 0.13 5.60 16 19 H 0.09 2.71 8.03 -2.39 -0.02 2.69 16 20 N -0.74 -30.38 4.42 -317.35 -1.40 -31.78 16 21 C -0.22 -11.34 10.46 84.03 0.88 -10.46 16 22 H 0.07 3.93 8.06 -2.92 -0.02 3.91 16 23 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 24 N -0.98 -59.47 13.97 21.65 0.30 -59.16 16 25 Si 0.93 43.90 27.74 68.60 1.90 45.80 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 27 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 28 H -0.26 -11.51 6.52 99.48 0.65 -10.86 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.09 7.91 -2.38 -0.02 1.07 16 32 H 0.04 1.14 6.38 -2.39 -0.02 1.13 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.05 1.68 7.99 -2.39 -0.02 1.66 16 36 H 0.09 2.29 8.01 -2.39 -0.02 2.27 16 37 H 0.15 3.52 7.66 -2.91 -0.02 3.50 16 38 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.25 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.17 4.79 2.76 -7.80 -0.02 4.77 16 41 H 0.09 2.34 6.69 -2.39 -0.02 2.33 16 42 H 0.07 2.37 6.67 -2.39 -0.02 2.36 16 43 H 0.36 15.09 3.96 -92.71 -0.37 14.72 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -69.70 365.67 1.97 -67.74 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.61 Total: 28.13 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 6.72 Total: 3.78 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -5.89 Total: -125.47 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.07 Total: -21.45 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.90 Total: 45.80 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.31 Total: 1.47 kcal Total: -69.70 1.97 -67.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996583731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.733 kcal (2) G-P(sol) polarization free energy of solvation -69.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds