Wall clock time and date at job start Wed Apr 1 2020 03:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38908 * 119.48523 * 2 1 4 4 C 1.36814 * 120.31139 * 179.52352 * 3 2 1 5 5 C 1.38700 * 119.62146 * 0.77943 * 4 3 2 6 6 S 1.76256 * 134.18528 * 179.19513 * 5 4 3 7 7 N 1.56008 * 97.56000 * 179.97438 * 6 5 4 8 8 C 1.29686 * 111.74255 * 0.02562 * 7 6 5 9 9 C 1.47378 * 121.82977 * 179.97438 * 8 7 6 10 10 O 1.21619 * 119.99959 * 174.30937 * 9 8 7 11 11 N 1.34776 * 120.00016 * 354.03861 * 9 8 7 12 12 C 1.46499 * 119.99884 * 354.62804 * 11 9 8 13 13 C 1.46496 * 119.99982 * 174.63529 * 11 9 8 14 14 C 1.53781 * 113.61499 * 219.13157 * 13 11 9 15 15 C 1.53956 * 87.02126 * 220.05113 * 14 13 11 16 16 N 1.46497 * 113.74573 * 139.94731 * 15 14 13 17 17 C 1.36933 * 120.00257 * 107.39797 * 16 15 14 18 18 H 1.07997 * 120.00134 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99815 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99963 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00197 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46989 * 90.00438 * 21 19 17 23 23 H 1.48499 * 109.47298 * 210.00148 * 21 19 17 24 24 H 1.48495 * 109.47390 * 330.00439 * 21 19 17 25 25 C 1.53778 * 87.11286 * 25.36253 * 15 14 13 26 26 C 1.40678 * 120.66518 * 359.41699 * 5 4 3 27 27 C 1.36337 * 119.48327 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47156 * 269.97634 * 1 2 3 29 29 H 1.08992 * 109.46876 * 29.98483 * 1 2 3 30 30 H 1.09000 * 109.46483 * 149.98443 * 1 2 3 31 31 H 1.07993 * 119.84299 * 0.03659 * 3 2 1 32 32 H 1.07996 * 120.18226 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.46376 * 85.13370 * 12 11 9 34 34 H 1.09000 * 109.47500 * 205.13353 * 12 11 9 35 35 H 1.08997 * 109.47449 * 325.14049 * 12 11 9 36 36 H 1.08996 * 112.85368 * 350.33272 * 13 11 9 37 37 H 1.09004 * 113.61209 * 334.56885 * 14 13 11 38 38 H 1.09005 * 113.61391 * 105.47249 * 14 13 11 39 39 H 1.09008 * 113.53346 * 270.81165 * 15 14 13 40 40 H 0.97004 * 119.99889 * 287.40542 * 16 15 14 41 41 H 0.97000 * 120.00341 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.61759 * 220.09261 * 25 15 14 43 43 H 1.08995 * 113.61555 * 89.18511 * 25 15 14 44 44 H 1.07995 * 120.01946 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1907 1.2092 0.0000 4 6 3.5587 1.2289 0.0098 5 6 4.2616 0.0333 0.0034 6 16 5.9738 -0.3852 -0.0063 7 7 5.8060 -1.9362 -0.0084 8 6 4.5568 -2.2843 -0.0032 9 6 4.1441 -3.6991 -0.0045 10 8 2.9682 -3.9897 0.1050 11 7 5.0693 -4.6708 -0.1325 12 6 6.4687 -4.3207 -0.3881 13 6 4.6755 -6.0770 -0.0162 14 6 5.6982 -6.9428 0.7384 15 6 5.4178 -8.0405 -0.3041 16 7 6.6158 -8.7659 -0.7337 17 6 6.8217 -10.0545 -0.3187 18 1 6.1006 -10.5362 0.3250 19 6 7.9572 -10.7416 -0.7254 20 7 8.1548 -11.9804 -0.3269 21 14 9.2040 -9.9087 -1.8393 22 1 10.2230 -9.2156 -1.0105 23 1 9.8682 -10.9294 -2.6891 24 1 8.5124 -8.9190 -2.7036 25 6 5.0024 -6.9136 -1.2645 26 6 3.5821 -1.1985 -0.0008 27 6 2.1780 -1.1868 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3632 -0.8899 -0.5141 31 1 1.6398 2.1380 0.0006 32 1 4.0881 2.1702 0.0094 33 1 6.9701 -4.1149 0.5576 34 1 6.9653 -5.1513 -0.8895 35 1 6.5117 -3.4353 -1.0223 36 1 3.6521 -6.2022 0.3375 37 1 6.7150 -6.5521 0.6983 38 1 5.3851 -7.2081 1.7482 39 1 4.5977 -8.7035 -0.0282 40 1 7.2634 -8.3333 -1.3120 41 1 8.9480 -12.4607 -0.6114 42 1 4.1284 -7.1553 -1.8693 43 1 5.8286 -6.5149 -1.8531 44 1 1.6299 -2.1174 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999227001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:31 Heat of formation + Delta-G solvation = 72.405565 kcal Electronic energy + Delta-G solvation = -26966.072430 eV Core-core repulsion = 23204.596646 eV Total energy + Delta-G solvation = -3761.475784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.05474 -39.80849 -38.24612 -37.29427 -34.90036 -33.20209 -32.84568 -31.18573 -30.55657 -27.50424 -27.14644 -26.59099 -25.25892 -24.37394 -23.41374 -22.17323 -21.22351 -19.73224 -19.04541 -18.88613 -17.50587 -17.33883 -16.70285 -16.21523 -16.01118 -15.67615 -14.88460 -14.73605 -14.67146 -14.47564 -14.12193 -14.01118 -13.86577 -13.15916 -13.06112 -12.74137 -12.69905 -12.64088 -12.40079 -12.27067 -12.12319 -11.95381 -11.90287 -11.75513 -11.10279 -11.02732 -11.01874 -10.67706 -10.50326 -10.20770 -10.13295 -10.06663 -9.83278 -9.59259 -9.32919 -8.94066 -8.58815 -8.17431 -7.31110 -5.80741 -3.16845 -0.00312 0.68368 0.98282 1.30849 1.44500 2.84263 2.88095 3.27834 3.34293 3.36618 3.42572 3.91614 4.17661 4.37854 4.55146 4.59369 4.74135 4.91803 4.98310 4.99564 5.03441 5.18029 5.19916 5.24524 5.25795 5.37951 5.50614 5.60113 5.61212 5.62455 5.63906 5.72444 5.73704 5.88702 5.92600 6.03162 6.13192 6.14310 6.19958 6.31948 6.41904 6.46347 6.64842 6.89128 7.33740 7.95038 7.98608 8.38715 9.15788 9.88248 10.07691 11.37337 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002331 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.847473 B =12011.068356 C =12988.083126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.089 4.089 4 C -0.071 4.071 5 C -0.202 4.202 6 S 0.367 5.633 7 N -0.475 5.475 8 C 0.092 3.908 9 C 0.583 3.417 10 O -0.531 6.531 11 N -0.577 5.577 12 C 0.082 3.918 13 C 0.116 3.884 14 C -0.174 4.174 15 C 0.177 3.823 16 N -0.734 5.734 17 C -0.248 4.248 18 H 0.092 0.908 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.165 4.165 26 C -0.082 4.082 27 C -0.044 4.044 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 31.813 0.167 33.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.093 4.093 5 C -0.323 4.323 6 S 0.527 5.473 7 N -0.301 5.301 8 C -0.095 4.095 9 C 0.366 3.634 10 O -0.407 6.407 11 N -0.307 5.307 12 C -0.061 4.061 13 C 0.013 3.987 14 C -0.216 4.216 15 C 0.064 3.936 16 N -0.373 5.373 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.191 4.191 20 N -0.579 5.579 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.205 4.205 26 C -0.093 4.093 27 C -0.066 4.066 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.489 31.529 0.308 32.927 hybrid contribution -0.459 0.176 -0.742 0.890 sum -9.947 31.704 -0.434 33.231 Atomic orbital electron populations 1.20843 0.90259 1.03283 1.02828 1.19673 0.96863 0.92561 0.99673 1.20965 0.93648 0.97994 0.98571 1.19916 0.93778 0.95269 1.00342 1.24236 1.01497 0.97726 1.08867 1.81564 1.02667 0.95880 1.67179 1.72135 1.23230 1.15465 1.19296 1.21929 0.86534 0.96020 1.05064 1.17233 0.85552 0.82803 0.77772 1.90758 1.16699 1.82288 1.50991 1.47741 1.08753 1.06173 1.68033 1.22039 0.80860 1.01255 1.01968 1.22723 1.00453 0.76755 0.98743 1.24343 0.98642 0.98175 1.00408 1.21345 0.90581 0.89794 0.91835 1.42702 1.22338 1.13677 1.58584 1.19138 1.05748 0.87723 1.25217 0.88999 1.24698 0.98216 0.95959 1.00213 1.69699 1.28912 1.10179 1.49091 0.86558 0.82177 0.78764 0.81078 1.21048 1.21667 1.20330 1.23957 1.01585 0.97725 0.97247 1.19553 0.95107 0.89815 1.04803 1.20692 0.90805 0.99175 0.95912 0.90732 0.91233 0.90964 0.84805 0.84795 0.92069 0.90692 0.89804 0.86322 0.89897 0.91492 0.89308 0.80494 0.92998 0.91173 0.90222 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.98 36.01 0.36 -0.29 16 2 C -0.09 -0.70 5.84 -105.06 -0.61 -1.31 16 3 C -0.09 -0.60 9.63 -39.85 -0.38 -0.98 16 4 C -0.07 -0.52 10.03 -39.93 -0.40 -0.92 16 5 C -0.20 -1.98 6.73 -38.49 -0.26 -2.24 16 6 S 0.37 3.38 23.36 -107.50 -2.51 0.87 16 7 N -0.48 -5.68 7.26 28.25 0.21 -5.48 16 8 C 0.09 1.22 6.61 -81.99 -0.54 0.68 16 9 C 0.58 8.75 7.65 -12.54 -0.10 8.65 16 10 O -0.53 -8.82 14.54 5.26 0.08 -8.75 16 11 N -0.58 -8.32 3.08 -174.29 -0.54 -8.86 16 12 C 0.08 1.06 7.88 59.85 0.47 1.53 16 13 C 0.12 1.76 4.19 -67.12 -0.28 1.47 16 14 C -0.17 -2.87 7.32 -25.83 -0.19 -3.06 16 15 C 0.18 3.31 4.48 -67.03 -0.30 3.01 16 16 N -0.73 -16.99 5.21 -52.55 -0.27 -17.26 16 17 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 21 Si 0.88 21.86 27.73 -169.99 -4.71 17.15 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 25 C -0.16 -2.62 7.35 -25.92 -0.19 -2.81 16 26 C -0.08 -0.98 6.10 -105.09 -0.64 -1.62 16 27 C -0.04 -0.47 9.18 -39.45 -0.36 -0.83 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 31 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 32 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.07 0.96 6.15 -51.93 -0.32 0.64 16 35 H 0.08 1.02 5.79 -51.93 -0.30 0.72 16 36 H 0.12 1.82 7.25 -51.93 -0.38 1.44 16 37 H 0.08 1.39 6.70 -51.93 -0.35 1.04 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.68 8.10 -51.92 -0.42 1.26 16 40 H 0.36 8.22 5.79 -40.82 -0.24 7.98 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.26 6.86 -51.93 -0.36 0.90 16 44 H 0.15 1.70 6.66 -52.49 -0.35 1.35 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -32.79 369.22 -10.77 -43.56 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.67 Total: 7.24 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.68 Total: -5.73 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.17 Total: -59.90 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.51 Total: 0.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.79 -10.77 -43.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999227001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.963 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds