Wall clock time and date at job start Wed Apr 1 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38908 * 119.48523 * 2 1 4 4 C 1.36814 * 120.31139 * 179.52352 * 3 2 1 5 5 C 1.38700 * 119.62146 * 0.77943 * 4 3 2 6 6 S 1.76256 * 134.18528 * 179.19513 * 5 4 3 7 7 N 1.56008 * 97.56000 * 179.97438 * 6 5 4 8 8 C 1.29686 * 111.74255 * 0.02562 * 7 6 5 9 9 C 1.47378 * 121.82977 * 179.97438 * 8 7 6 10 10 O 1.21619 * 119.99959 * 174.30937 * 9 8 7 11 11 N 1.34776 * 120.00016 * 354.03861 * 9 8 7 12 12 C 1.46499 * 119.99884 * 354.62804 * 11 9 8 13 13 C 1.46496 * 119.99982 * 174.63529 * 11 9 8 14 14 C 1.53781 * 113.61499 * 219.13157 * 13 11 9 15 15 C 1.53956 * 87.02126 * 220.05113 * 14 13 11 16 16 N 1.46497 * 113.74573 * 139.94731 * 15 14 13 17 17 C 1.36933 * 120.00257 * 107.39797 * 16 15 14 18 18 H 1.07997 * 120.00134 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99815 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99963 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00197 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46989 * 90.00438 * 21 19 17 23 23 H 1.48499 * 109.47298 * 210.00148 * 21 19 17 24 24 H 1.48495 * 109.47390 * 330.00439 * 21 19 17 25 25 C 1.53778 * 87.11286 * 25.36253 * 15 14 13 26 26 C 1.40678 * 120.66518 * 359.41699 * 5 4 3 27 27 C 1.36337 * 119.48327 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47156 * 269.97634 * 1 2 3 29 29 H 1.08992 * 109.46876 * 29.98483 * 1 2 3 30 30 H 1.09000 * 109.46483 * 149.98443 * 1 2 3 31 31 H 1.07993 * 119.84299 * 0.03659 * 3 2 1 32 32 H 1.07996 * 120.18226 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.46376 * 85.13370 * 12 11 9 34 34 H 1.09000 * 109.47500 * 205.13353 * 12 11 9 35 35 H 1.08997 * 109.47449 * 325.14049 * 12 11 9 36 36 H 1.08996 * 112.85368 * 350.33272 * 13 11 9 37 37 H 1.09004 * 113.61209 * 334.56885 * 14 13 11 38 38 H 1.09005 * 113.61391 * 105.47249 * 14 13 11 39 39 H 1.09008 * 113.53346 * 270.81165 * 15 14 13 40 40 H 0.97004 * 119.99889 * 287.40542 * 16 15 14 41 41 H 0.97000 * 120.00341 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.61759 * 220.09261 * 25 15 14 43 43 H 1.08995 * 113.61555 * 89.18511 * 25 15 14 44 44 H 1.07995 * 120.01946 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1907 1.2092 0.0000 4 6 3.5587 1.2289 0.0098 5 6 4.2616 0.0333 0.0034 6 16 5.9738 -0.3852 -0.0063 7 7 5.8060 -1.9362 -0.0084 8 6 4.5568 -2.2843 -0.0032 9 6 4.1441 -3.6991 -0.0045 10 8 2.9682 -3.9897 0.1050 11 7 5.0693 -4.6708 -0.1325 12 6 6.4687 -4.3207 -0.3881 13 6 4.6755 -6.0770 -0.0162 14 6 5.6982 -6.9428 0.7384 15 6 5.4178 -8.0405 -0.3041 16 7 6.6158 -8.7659 -0.7337 17 6 6.8217 -10.0545 -0.3187 18 1 6.1006 -10.5362 0.3250 19 6 7.9572 -10.7416 -0.7254 20 7 8.1548 -11.9804 -0.3269 21 14 9.2040 -9.9087 -1.8393 22 1 10.2230 -9.2156 -1.0105 23 1 9.8682 -10.9294 -2.6891 24 1 8.5124 -8.9190 -2.7036 25 6 5.0024 -6.9136 -1.2645 26 6 3.5821 -1.1985 -0.0008 27 6 2.1780 -1.1868 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3632 -0.8899 -0.5141 31 1 1.6398 2.1380 0.0006 32 1 4.0881 2.1702 0.0094 33 1 6.9701 -4.1149 0.5576 34 1 6.9653 -5.1513 -0.8895 35 1 6.5117 -3.4353 -1.0223 36 1 3.6521 -6.2022 0.3375 37 1 6.7150 -6.5521 0.6983 38 1 5.3851 -7.2081 1.7482 39 1 4.5977 -8.7035 -0.0282 40 1 7.2634 -8.3333 -1.3120 41 1 8.9480 -12.4607 -0.6114 42 1 4.1284 -7.1553 -1.8693 43 1 5.8286 -6.5149 -1.8531 44 1 1.6299 -2.1174 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999227001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:30 Heat of formation + Delta-G solvation = 52.814388 kcal Electronic energy + Delta-G solvation = -26966.921967 eV Core-core repulsion = 23204.596646 eV Total energy + Delta-G solvation = -3762.325321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99167 -40.80536 -39.42046 -38.19762 -36.32917 -34.87396 -33.54726 -32.57680 -31.84375 -28.24335 -28.09327 -27.66375 -26.62793 -25.92160 -24.39876 -23.33399 -22.16745 -21.01309 -20.38075 -19.70572 -19.34251 -18.35235 -17.79048 -17.10334 -17.02356 -16.48643 -16.43381 -16.03890 -15.61758 -15.50583 -15.31061 -14.88061 -14.72789 -14.57306 -14.42757 -14.18444 -13.68770 -13.62403 -13.53763 -13.32306 -13.14173 -13.00407 -12.88762 -12.77174 -12.55136 -12.33213 -12.11256 -12.04561 -11.83953 -11.75472 -11.70703 -11.58508 -10.95529 -10.89894 -10.78008 -9.97439 -9.75257 -9.31301 -8.88328 -8.02987 -5.37001 -0.81004 0.00086 0.27576 0.53477 0.63156 1.37188 1.40939 1.48104 1.79474 1.87088 2.47803 2.57219 3.13209 3.26287 3.34132 3.56514 3.70546 3.74969 3.78292 3.91810 4.03790 4.17587 4.20104 4.22941 4.34306 4.37247 4.60011 4.66703 4.70465 4.75610 4.77983 4.81138 4.85618 4.90143 4.97303 5.03233 5.08356 5.12373 5.17674 5.27766 5.31955 5.51789 5.58109 5.76529 5.83140 6.19150 6.22702 6.86718 7.06090 7.81618 8.01582 9.18330 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002331 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.847473 B =12011.068356 C =12988.083126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.083 4.083 4 C -0.067 4.067 5 C -0.217 4.217 6 S 0.423 5.577 7 N -0.491 5.491 8 C 0.065 3.935 9 C 0.579 3.421 10 O -0.557 6.557 11 N -0.579 5.579 12 C 0.086 3.914 13 C 0.129 3.871 14 C -0.163 4.163 15 C 0.159 3.841 16 N -0.737 5.737 17 C -0.234 4.234 18 H 0.058 0.942 19 C -0.066 4.066 20 N -0.983 5.983 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.250 1.250 25 C -0.149 4.149 26 C -0.106 4.106 27 C -0.074 4.074 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.172 0.828 32 H 0.169 0.831 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 36.533 -0.748 38.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.106 4.106 4 C -0.088 4.088 5 C -0.337 4.337 6 S 0.584 5.416 7 N -0.320 5.320 8 C -0.121 4.121 9 C 0.364 3.636 10 O -0.436 6.436 11 N -0.310 5.310 12 C -0.057 4.057 13 C 0.025 3.975 14 C -0.204 4.204 15 C 0.049 3.951 16 N -0.378 5.378 17 C -0.365 4.365 18 H 0.076 0.924 19 C -0.257 4.257 20 N -0.634 5.634 21 Si 0.783 3.217 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.175 1.175 25 C -0.189 4.189 26 C -0.116 4.116 27 C -0.097 4.097 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.190 0.810 32 H 0.186 0.814 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.433 36.320 -0.606 37.529 hybrid contribution -0.609 -1.137 -0.374 1.342 sum -10.042 35.183 -0.980 36.601 Atomic orbital electron populations 1.20916 0.88623 1.04118 1.03570 1.20021 0.98152 0.92264 0.97758 1.21420 0.93696 0.98710 0.96753 1.20422 0.94232 0.95608 0.98548 1.24498 1.01722 0.97940 1.09588 1.81237 1.01830 0.93531 1.64983 1.71835 1.23064 1.17973 1.19111 1.21683 0.87321 0.95205 1.07909 1.17574 0.85209 0.83824 0.77040 1.90731 1.17749 1.82990 1.52109 1.47750 1.09450 1.05608 1.68143 1.22087 0.79809 1.01575 1.02238 1.22437 0.99786 0.77477 0.97758 1.24156 0.99251 0.97213 0.99786 1.21595 0.89051 0.90389 0.94028 1.42643 1.23904 1.12285 1.58925 1.19096 1.04522 0.89344 1.23525 0.92371 1.25540 1.00797 0.96703 1.02673 1.69888 1.29840 1.12235 1.51409 0.85400 0.79298 0.77927 0.79100 1.20347 1.22412 1.17467 1.23805 1.02019 0.95964 0.97130 1.19671 0.95565 0.90351 1.06034 1.20678 0.90731 0.99627 0.98650 0.89922 0.88869 0.91689 0.81015 0.81381 0.91879 0.90597 0.89077 0.86672 0.89652 0.91554 0.90149 0.79908 0.93358 0.90354 0.89451 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.98 71.24 0.71 -0.35 16 2 C -0.08 -1.16 5.84 -20.15 -0.12 -1.28 16 3 C -0.08 -0.80 9.63 22.10 0.21 -0.59 16 4 C -0.07 -0.73 10.03 22.05 0.22 -0.51 16 5 C -0.22 -3.78 6.73 22.98 0.15 -3.63 16 6 S 0.42 6.87 23.36 -56.49 -1.32 5.55 16 7 N -0.49 -11.23 7.26 -64.54 -0.47 -11.70 16 8 C 0.07 1.71 6.61 43.85 0.29 2.00 16 9 C 0.58 17.65 7.65 86.65 0.66 18.31 16 10 O -0.56 -19.28 14.54 -4.09 -0.06 -19.34 16 11 N -0.58 -16.52 3.08 -823.57 -2.54 -19.06 16 12 C 0.09 2.10 7.88 127.77 1.01 3.11 16 13 C 0.13 3.86 4.19 45.52 0.19 4.05 16 14 C -0.16 -5.31 7.32 31.18 0.23 -5.08 16 15 C 0.16 5.95 4.48 45.58 0.20 6.16 16 16 N -0.74 -33.83 5.21 -320.17 -1.67 -35.50 16 17 C -0.23 -13.28 10.45 84.03 0.88 -12.40 16 18 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 19 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 20 N -0.98 -63.26 13.97 21.65 0.30 -62.96 16 21 Si 0.96 45.19 27.73 68.60 1.90 47.09 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 24 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 25 C -0.15 -4.59 7.35 31.12 0.23 -4.36 16 26 C -0.11 -2.50 6.10 -20.17 -0.12 -2.62 16 27 C -0.07 -1.62 9.18 22.36 0.21 -1.41 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 30 H 0.06 0.70 8.07 -2.39 -0.02 0.68 16 31 H 0.17 0.36 8.06 -2.91 -0.02 0.33 16 32 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.06 1.51 8.08 -2.38 -0.02 1.49 16 34 H 0.08 1.82 6.15 -2.39 -0.01 1.81 16 35 H 0.09 2.11 5.79 -2.39 -0.01 2.10 16 36 H 0.12 3.57 7.25 -2.39 -0.02 3.55 16 37 H 0.08 2.77 6.70 -2.38 -0.02 2.75 16 38 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.08 3.12 8.10 -2.38 -0.02 3.10 16 40 H 0.37 16.03 5.79 -92.71 -0.54 15.50 16 41 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.09 2.59 6.86 -2.39 -0.02 2.57 16 44 H 0.13 3.17 6.66 -2.91 -0.02 3.15 16 Total: -1.00 -73.80 369.22 2.02 -71.78 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.45 Total: 26.14 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.42 Total: -2.00 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -4.37 Total: -129.22 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.06 Total: -19.34 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -1.32 Total: 5.55 kcal Total: -73.80 2.02 -71.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999227001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.593 kcal (2) G-P(sol) polarization free energy of solvation -73.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds