Wall clock time and date at job start Wed Apr 1 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38906 * 119.48215 * 2 1 4 4 C 1.36804 * 120.30634 * 179.97438 * 3 2 1 5 5 C 1.38700 * 119.63023 * 359.97438 * 4 3 2 6 6 S 1.76251 * 134.18625 * 179.97438 * 5 4 3 7 7 N 1.56003 * 97.56232 * 179.81441 * 6 5 4 8 8 C 1.29684 * 111.74083 * 0.33653 * 7 6 5 9 9 C 1.47386 * 121.83266 * 179.87314 * 8 7 6 10 10 O 1.21611 * 120.00355 * 172.59569 * 9 8 7 11 11 N 1.34780 * 119.99227 * 352.59373 * 9 8 7 12 12 C 1.46926 * 120.63633 * 352.98957 * 11 9 8 13 13 C 1.53184 * 108.77638 * 126.40876 * 12 11 9 14 14 C 1.53038 * 109.31515 * 54.63625 * 13 12 11 15 15 C 1.53038 * 109.53832 * 298.63373 * 14 13 12 16 16 H 1.09004 * 109.49814 * 301.38058 * 15 14 13 17 17 N 1.46499 * 109.50221 * 181.31643 * 15 14 13 18 18 C 1.36931 * 120.00398 * 154.99589 * 17 15 14 19 19 H 1.08000 * 120.00017 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00406 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99713 * 359.72487 * 20 18 17 22 22 Si 1.86794 * 120.00433 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47164 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47202 * 120.00011 * 22 20 18 25 25 H 1.48498 * 109.47374 * 239.99969 * 22 20 18 26 26 C 1.46932 * 120.62468 * 173.00448 * 11 9 8 27 27 C 1.40674 * 120.66232 * 0.02562 * 5 4 3 28 28 C 1.36332 * 119.48530 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47256 * 90.00032 * 1 2 3 30 30 H 1.09003 * 109.47604 * 210.00161 * 1 2 3 31 31 H 1.09003 * 109.47274 * 330.00693 * 1 2 3 32 32 H 1.07995 * 119.84883 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.18824 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.58238 * 6.62226 * 12 11 9 35 35 H 1.09000 * 109.58247 * 246.20271 * 12 11 9 36 36 H 1.09006 * 109.50150 * 294.67947 * 13 12 11 37 37 H 1.09002 * 109.49402 * 174.58641 * 13 12 11 38 38 H 1.09001 * 109.46204 * 178.61290 * 14 13 12 39 39 H 1.08998 * 109.45256 * 58.64569 * 14 13 12 40 40 H 0.97001 * 119.99308 * 335.00042 * 17 15 14 41 41 H 0.97003 * 120.00388 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.58269 * 113.80277 * 26 11 9 43 43 H 1.09000 * 109.58464 * 353.37300 * 26 11 9 44 44 H 1.08005 * 120.01501 * 0.04763 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1906 1.2092 0.0000 4 6 3.5585 1.2289 0.0005 5 6 4.2615 0.0332 0.0016 6 16 5.9736 -0.3852 0.0020 7 7 5.8059 -1.9361 0.0084 8 6 4.5567 -2.2843 0.0037 9 6 4.1440 -3.6992 0.0054 10 8 2.9706 -3.9902 0.1366 11 7 5.0673 -4.6705 -0.1385 12 6 6.4635 -4.3360 -0.4505 13 6 7.3736 -5.0010 0.5869 14 6 7.0812 -6.5027 0.6281 15 6 5.6265 -6.7296 1.0456 16 1 5.4540 -6.2793 2.0232 17 7 5.3563 -8.1678 1.1154 18 6 4.3551 -8.6381 1.9225 19 1 3.7643 -7.9487 2.5075 20 6 4.0995 -10.0008 1.9890 21 7 4.8159 -10.8404 1.2719 22 14 2.7333 -10.6423 3.0895 23 1 2.0773 -9.5027 3.7796 24 1 1.7312 -11.3641 2.2649 25 1 3.3048 -11.5699 4.0985 26 6 4.6965 -6.0841 0.0135 27 6 3.5820 -1.1985 0.0016 28 6 2.1780 -1.1867 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6397 2.1381 -0.0004 33 1 4.0880 2.1701 0.0001 34 1 6.5971 -3.2548 -0.4141 35 1 6.7137 -4.7039 -1.4456 36 1 7.1846 -4.5665 1.5686 37 1 8.4161 -4.8408 0.3121 38 1 7.7446 -6.9822 1.3479 39 1 7.2465 -6.9319 -0.3600 40 1 5.8867 -8.7868 0.5897 41 1 4.6376 -11.7928 1.3186 42 1 4.8027 -6.5946 -0.9437 43 1 3.6643 -6.1563 0.3561 44 1 1.6298 -2.1174 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999893234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:36 Heat of formation + Delta-G solvation = 46.570945 kcal Electronic energy + Delta-G solvation = -27504.752119 eV Core-core repulsion = 23742.156062 eV Total energy + Delta-G solvation = -3762.596057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95864 -39.50572 -37.50064 -37.14309 -34.42915 -32.92245 -32.25504 -31.16935 -31.04582 -28.42566 -27.33573 -26.69252 -24.42367 -24.01853 -23.12050 -21.82446 -21.53661 -20.15286 -19.08906 -18.85986 -17.21525 -17.07031 -16.50071 -15.82241 -15.58462 -15.43873 -14.97725 -14.65127 -14.38352 -14.25435 -14.08382 -13.84681 -13.71787 -13.43971 -13.38232 -12.82992 -12.56591 -12.40331 -12.32400 -12.26150 -12.09736 -11.86638 -11.68445 -11.16252 -10.97495 -10.88136 -10.82204 -10.55651 -10.19092 -10.14684 -9.97158 -9.80448 -9.75830 -9.39229 -9.21297 -9.06058 -8.38482 -8.05524 -6.99229 -5.78142 -3.07792 0.06041 0.78327 1.06060 1.41066 1.51971 3.03515 3.10874 3.41040 3.44997 3.51188 3.53558 4.00594 4.29695 4.47481 4.59539 4.69472 4.83361 5.00409 5.08319 5.19467 5.26271 5.27443 5.34337 5.39997 5.50813 5.59147 5.66714 5.71068 5.73297 5.80568 5.85238 5.91563 6.02751 6.11222 6.17118 6.22695 6.24474 6.29472 6.42156 6.49614 6.54395 6.78071 6.83949 7.02750 7.60784 7.72575 8.22832 8.40075 9.51834 10.05876 10.41498 11.44179 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.002935 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.109775 B = 9538.151218 C =11228.586727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.087 4.087 3 C -0.087 4.087 4 C -0.074 4.074 5 C -0.196 4.196 6 S 0.348 5.652 7 N -0.475 5.475 8 C 0.105 3.895 9 C 0.578 3.422 10 O -0.527 6.527 11 N -0.581 5.581 12 C 0.065 3.935 13 C -0.123 4.123 14 C -0.127 4.127 15 C 0.169 3.831 16 H 0.051 0.949 17 N -0.717 5.717 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.092 3.908 27 C -0.083 4.083 28 C -0.041 4.041 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 28.298 -5.372 28.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.110 4.110 4 C -0.096 4.096 5 C -0.317 4.317 6 S 0.511 5.489 7 N -0.299 5.299 8 C -0.083 4.083 9 C 0.361 3.639 10 O -0.403 6.403 11 N -0.313 5.313 12 C -0.061 4.061 13 C -0.162 4.162 14 C -0.166 4.166 15 C 0.058 3.942 16 H 0.069 0.931 17 N -0.358 5.358 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.032 4.032 27 C -0.094 4.094 28 C -0.063 4.063 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.085 28.288 -5.153 28.829 hybrid contribution -2.121 -1.210 0.347 2.467 sum -0.037 27.078 -4.806 27.501 Atomic orbital electron populations 1.20845 0.90266 1.03342 1.02781 1.19664 0.96876 0.92536 0.99827 1.20960 0.93644 0.97964 0.98421 1.19905 0.93763 0.95250 1.00645 1.24171 1.01265 0.97675 1.08554 1.81612 1.02949 0.96881 1.67477 1.71826 1.22507 1.14367 1.21216 1.22124 0.86458 0.96262 1.03423 1.17255 0.85696 0.82635 0.78355 1.90778 1.16840 1.82025 1.50702 1.48135 1.09170 1.07034 1.66985 1.23058 0.79931 1.05250 0.97874 1.21790 0.98736 0.96179 0.99450 1.21855 0.98035 0.94882 1.01813 1.20483 0.91268 0.86586 0.95860 0.93131 1.42392 1.40574 0.99856 1.52941 1.19321 1.08870 0.91033 1.18051 0.90985 1.24751 0.99697 0.95977 1.00301 1.69675 1.42275 1.02113 1.43930 0.86114 0.81522 0.78690 0.79894 1.20421 1.21772 1.21851 1.22920 1.02568 0.76777 1.00937 1.19541 0.95103 0.89743 1.04989 1.20733 0.90863 0.99272 0.95450 0.90785 0.90874 0.91259 0.84828 0.84819 0.83957 0.92096 0.91846 0.91203 0.91480 0.92098 0.78034 0.93508 0.91704 0.89027 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.98 36.00 0.36 -0.43 16 2 C -0.09 -0.81 5.84 -105.06 -0.61 -1.42 16 3 C -0.09 -0.66 9.63 -39.85 -0.38 -1.05 16 4 C -0.07 -0.60 10.03 -39.93 -0.40 -1.00 16 5 C -0.20 -2.08 6.73 -38.49 -0.26 -2.34 16 6 S 0.35 3.41 23.36 -107.50 -2.51 0.90 16 7 N -0.47 -6.08 7.07 28.24 0.20 -5.88 16 8 C 0.11 1.54 6.68 -81.98 -0.55 0.99 16 9 C 0.58 10.10 7.66 -12.54 -0.10 10.00 16 10 O -0.53 -10.46 14.51 5.27 0.08 -10.38 16 11 N -0.58 -9.90 2.97 -174.05 -0.52 -10.42 16 12 C 0.06 0.91 6.25 -3.71 -0.02 0.89 16 13 C -0.12 -1.70 6.08 -26.62 -0.16 -1.86 16 14 C -0.13 -2.14 5.35 -26.69 -0.14 -2.28 16 15 C 0.17 3.49 2.92 -67.81 -0.20 3.29 16 16 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 17 N -0.72 -18.13 5.12 -53.31 -0.27 -18.40 16 18 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 19 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C 0.09 1.82 6.00 -3.71 -0.02 1.80 16 27 C -0.08 -1.10 6.09 -105.09 -0.64 -1.74 16 28 C -0.04 -0.50 9.18 -39.45 -0.36 -0.86 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 31 H 0.07 0.35 8.08 -51.93 -0.42 -0.06 16 32 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.14 1.90 3.55 -94.18 -0.33 1.56 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.39 10.23 7.80 -40.82 -0.32 9.92 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 2.05 7.05 -51.93 -0.37 1.68 16 44 H 0.15 1.99 6.67 -52.48 -0.35 1.64 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -32.40 369.37 -11.47 -43.87 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.98 Total: 7.87 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.74 Total: -3.40 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.13 Total: -62.21 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.51 Total: 0.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.40 -11.47 -43.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999893234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.445 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds