Wall clock time and date at job start Wed Apr 1 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38906 * 119.48215 * 2 1 4 4 C 1.36804 * 120.30634 * 179.97438 * 3 2 1 5 5 C 1.38700 * 119.63023 * 359.97438 * 4 3 2 6 6 S 1.76251 * 134.18625 * 179.97438 * 5 4 3 7 7 N 1.56003 * 97.56232 * 179.81441 * 6 5 4 8 8 C 1.29684 * 111.74083 * 0.33653 * 7 6 5 9 9 C 1.47386 * 121.83266 * 179.87314 * 8 7 6 10 10 O 1.21611 * 120.00355 * 172.59569 * 9 8 7 11 11 N 1.34780 * 119.99227 * 352.59373 * 9 8 7 12 12 C 1.46926 * 120.63633 * 352.98957 * 11 9 8 13 13 C 1.53184 * 108.77638 * 126.40876 * 12 11 9 14 14 C 1.53038 * 109.31515 * 54.63625 * 13 12 11 15 15 C 1.53038 * 109.53832 * 298.63373 * 14 13 12 16 16 H 1.09004 * 109.49814 * 301.38058 * 15 14 13 17 17 N 1.46499 * 109.50221 * 181.31643 * 15 14 13 18 18 C 1.36931 * 120.00398 * 154.99589 * 17 15 14 19 19 H 1.08000 * 120.00017 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00406 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99713 * 359.72487 * 20 18 17 22 22 Si 1.86794 * 120.00433 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47164 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47202 * 120.00011 * 22 20 18 25 25 H 1.48498 * 109.47374 * 239.99969 * 22 20 18 26 26 C 1.46932 * 120.62468 * 173.00448 * 11 9 8 27 27 C 1.40674 * 120.66232 * 0.02562 * 5 4 3 28 28 C 1.36332 * 119.48530 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47256 * 90.00032 * 1 2 3 30 30 H 1.09003 * 109.47604 * 210.00161 * 1 2 3 31 31 H 1.09003 * 109.47274 * 330.00693 * 1 2 3 32 32 H 1.07995 * 119.84883 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.18824 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.58238 * 6.62226 * 12 11 9 35 35 H 1.09000 * 109.58247 * 246.20271 * 12 11 9 36 36 H 1.09006 * 109.50150 * 294.67947 * 13 12 11 37 37 H 1.09002 * 109.49402 * 174.58641 * 13 12 11 38 38 H 1.09001 * 109.46204 * 178.61290 * 14 13 12 39 39 H 1.08998 * 109.45256 * 58.64569 * 14 13 12 40 40 H 0.97001 * 119.99308 * 335.00042 * 17 15 14 41 41 H 0.97003 * 120.00388 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.58269 * 113.80277 * 26 11 9 43 43 H 1.09000 * 109.58464 * 353.37300 * 26 11 9 44 44 H 1.08005 * 120.01501 * 0.04763 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1906 1.2092 0.0000 4 6 3.5585 1.2289 0.0005 5 6 4.2615 0.0332 0.0016 6 16 5.9736 -0.3852 0.0020 7 7 5.8059 -1.9361 0.0084 8 6 4.5567 -2.2843 0.0037 9 6 4.1440 -3.6992 0.0054 10 8 2.9706 -3.9902 0.1366 11 7 5.0673 -4.6705 -0.1385 12 6 6.4635 -4.3360 -0.4505 13 6 7.3736 -5.0010 0.5869 14 6 7.0812 -6.5027 0.6281 15 6 5.6265 -6.7296 1.0456 16 1 5.4540 -6.2793 2.0232 17 7 5.3563 -8.1678 1.1154 18 6 4.3551 -8.6381 1.9225 19 1 3.7643 -7.9487 2.5075 20 6 4.0995 -10.0008 1.9890 21 7 4.8159 -10.8404 1.2719 22 14 2.7333 -10.6423 3.0895 23 1 2.0773 -9.5027 3.7796 24 1 1.7312 -11.3641 2.2649 25 1 3.3048 -11.5699 4.0985 26 6 4.6965 -6.0841 0.0135 27 6 3.5820 -1.1985 0.0016 28 6 2.1780 -1.1867 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6397 2.1381 -0.0004 33 1 4.0880 2.1701 0.0001 34 1 6.5971 -3.2548 -0.4141 35 1 6.7137 -4.7039 -1.4456 36 1 7.1846 -4.5665 1.5686 37 1 8.4161 -4.8408 0.3121 38 1 7.7446 -6.9822 1.3479 39 1 7.2465 -6.9319 -0.3600 40 1 5.8867 -8.7868 0.5897 41 1 4.6376 -11.7928 1.3186 42 1 4.8027 -6.5946 -0.9437 43 1 3.6643 -6.1563 0.3561 44 1 1.6298 -2.1174 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999893234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:35 Heat of formation + Delta-G solvation = 27.021296 kcal Electronic energy + Delta-G solvation = -27505.599855 eV Core-core repulsion = 23742.156062 eV Total energy + Delta-G solvation = -3763.443794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.01802 -40.57752 -38.76772 -38.30346 -36.21930 -34.01565 -33.53001 -32.80062 -31.90097 -30.18085 -28.08325 -27.88654 -25.93292 -25.59916 -24.05283 -23.30002 -22.42299 -21.53456 -20.38287 -19.78349 -19.17195 -18.30213 -17.46893 -17.08153 -16.67177 -16.57526 -16.39850 -15.82734 -15.72247 -15.58715 -15.29505 -15.13300 -15.00391 -14.66906 -14.47667 -14.18982 -13.95467 -13.72849 -13.27113 -13.14569 -13.00823 -12.94458 -12.82842 -12.70959 -12.59167 -12.48368 -12.18424 -11.96408 -11.87321 -11.75973 -11.47485 -11.40161 -11.14444 -10.78673 -10.53249 -9.96970 -9.85219 -9.08800 -8.84859 -8.01209 -5.31144 -0.87291 -0.00402 0.25684 0.51706 0.58934 1.42634 1.43964 1.54188 1.83639 1.88922 2.51203 2.56670 3.11039 3.30667 3.32554 3.73047 3.76499 3.89856 3.95475 4.02660 4.20082 4.21286 4.31978 4.32605 4.33226 4.37106 4.65184 4.66913 4.69841 4.75341 4.81307 4.84020 4.95957 4.99462 5.03893 5.10912 5.12653 5.17245 5.27164 5.31549 5.39476 5.42367 5.53249 5.58051 5.82846 6.20992 6.28497 6.89390 7.27787 7.98155 8.24941 9.21671 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.002935 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.109775 B = 9538.151218 C =11228.586727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.080 4.080 4 C -0.064 4.064 5 C -0.211 4.211 6 S 0.432 5.568 7 N -0.489 5.489 8 C 0.074 3.926 9 C 0.572 3.428 10 O -0.567 6.567 11 N -0.585 5.585 12 C 0.061 3.939 13 C -0.112 4.112 14 C -0.118 4.118 15 C 0.170 3.830 16 H 0.031 0.969 17 N -0.728 5.728 18 C -0.246 4.246 19 H 0.066 0.934 20 C -0.068 4.068 21 N -0.964 5.964 22 Si 0.970 3.030 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.287 1.287 26 C 0.108 3.892 27 C -0.106 4.106 28 C -0.079 4.079 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.160 0.840 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.378 0.622 41 H 0.254 0.746 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 32.642 -5.500 33.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.103 4.103 4 C -0.086 4.086 5 C -0.332 4.332 6 S 0.596 5.404 7 N -0.316 5.316 8 C -0.112 4.112 9 C 0.356 3.644 10 O -0.446 6.446 11 N -0.316 5.316 12 C -0.063 4.063 13 C -0.151 4.151 14 C -0.157 4.157 15 C 0.060 3.940 16 H 0.049 0.951 17 N -0.368 5.368 18 C -0.378 4.378 19 H 0.084 0.916 20 C -0.260 4.260 21 N -0.614 5.614 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.217 1.217 25 H -0.214 1.214 26 C -0.018 4.018 27 C -0.116 4.116 28 C -0.101 4.101 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.193 0.807 33 H 0.191 0.809 34 H 0.176 0.824 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.211 0.789 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.032 32.689 -5.285 33.252 hybrid contribution -2.391 -2.296 0.365 3.335 sum 0.641 30.393 -4.919 30.795 Atomic orbital electron populations 1.20922 0.88774 1.04009 1.03596 1.20005 0.98093 0.92270 0.97777 1.21429 0.93807 0.98522 0.96553 1.20455 0.94127 0.95651 0.98350 1.24467 1.01777 0.97695 1.09299 1.81198 1.01409 0.93545 1.64268 1.71265 1.22075 1.17588 1.20664 1.21611 0.87500 0.94677 1.07433 1.17761 0.85167 0.84184 0.77274 1.90742 1.18482 1.83077 1.52258 1.48144 1.10632 1.05629 1.67222 1.23337 0.77941 1.06589 0.98454 1.21762 1.00740 0.93366 0.99241 1.21762 0.94676 0.97416 1.01807 1.20599 0.94166 0.84026 0.95204 0.95051 1.42501 1.39951 1.01714 1.52585 1.19555 1.09132 0.91235 1.17879 0.91629 1.25510 1.02193 0.96218 1.02109 1.69805 1.43903 1.02111 1.45558 0.85131 0.78791 0.78034 0.78163 1.19735 1.21712 1.21375 1.22370 1.00235 0.79067 1.00117 1.19606 0.95430 0.90404 1.06185 1.20671 0.91002 0.99561 0.98892 0.89798 0.92166 0.88632 0.80743 0.80885 0.82425 0.90954 0.92440 0.87490 0.91737 0.91481 0.78933 0.93759 0.92051 0.92637 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.98 71.23 0.71 -0.72 16 2 C -0.08 -1.38 5.84 -20.15 -0.12 -1.50 16 3 C -0.08 -0.90 9.63 22.09 0.21 -0.69 16 4 C -0.06 -0.77 10.03 22.04 0.22 -0.55 16 5 C -0.21 -3.98 6.73 22.98 0.15 -3.82 16 6 S 0.43 7.15 23.36 -56.49 -1.32 5.83 16 7 N -0.49 -11.89 7.07 -64.55 -0.46 -12.35 16 8 C 0.07 2.20 6.68 43.86 0.29 2.50 16 9 C 0.57 21.34 7.66 86.65 0.66 22.01 16 10 O -0.57 -24.78 14.51 -4.07 -0.06 -24.84 16 11 N -0.58 -20.85 2.97 -822.82 -2.45 -23.29 16 12 C 0.06 1.67 6.25 86.36 0.54 2.21 16 13 C -0.11 -2.96 6.08 30.67 0.19 -2.77 16 14 C -0.12 -3.97 5.35 30.62 0.16 -3.80 16 15 C 0.17 7.33 2.92 45.07 0.13 7.46 16 16 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 17 N -0.73 -38.44 5.12 -322.58 -1.65 -40.09 16 18 C -0.25 -14.44 9.93 84.03 0.83 -13.60 16 19 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 21 N -0.96 -59.96 13.06 21.65 0.28 -59.68 16 22 Si 0.97 48.12 29.55 68.60 2.03 50.15 16 23 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 C 0.11 4.53 6.00 86.36 0.52 5.05 16 27 C -0.11 -2.83 6.09 -20.17 -0.12 -2.95 16 28 C -0.08 -2.02 9.18 22.35 0.21 -1.82 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.90 8.07 -2.39 -0.02 0.88 16 31 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 34 H 0.16 3.97 3.55 -85.81 -0.30 3.66 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.38 20.88 7.80 -92.71 -0.72 20.16 16 41 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.05 2.71 7.05 -2.39 -0.02 2.70 16 44 H 0.12 3.66 6.67 -2.91 -0.02 3.64 16 Total: -1.00 -75.63 369.37 1.46 -74.17 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.02 Total: 26.64 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.06 Total: 3.46 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -4.27 Total: -135.41 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.06 Total: -24.84 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -1.32 Total: 5.83 kcal Total: -75.63 1.46 -74.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999893234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.188 kcal (2) G-P(sol) polarization free energy of solvation -75.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds