Wall clock time and date at job start Wed Apr 1 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.28054 * 124.24369 * 2 1 4 4 C 1.34414 * 117.91710 * 180.02562 * 3 2 1 5 5 C 1.41245 * 129.48243 * 179.97438 * 4 3 2 6 6 C 1.35764 * 120.63301 * 179.73849 * 5 4 3 7 7 C 1.40186 * 120.61605 * 0.52767 * 6 5 4 8 8 C 1.47591 * 120.12776 * 179.75326 * 7 6 5 9 9 O 1.21589 * 120.00170 * 318.21205 * 8 7 6 10 10 N 1.34772 * 119.99981 * 138.21119 * 8 7 6 11 11 C 1.46925 * 120.63175 * 174.15724 * 10 8 7 12 12 C 1.53194 * 108.77934 * 126.37067 * 11 10 8 13 13 C 1.53039 * 109.31309 * 54.63120 * 12 11 10 14 14 C 1.53036 * 109.54055 * 298.63855 * 13 12 11 15 15 H 1.09002 * 109.49607 * 301.38293 * 14 13 12 16 16 N 1.46499 * 109.50082 * 181.31606 * 14 13 12 17 17 C 1.36932 * 120.00051 * 154.99717 * 16 14 13 18 18 H 1.07994 * 120.00483 * 0.02562 * 17 16 14 19 19 C 1.38821 * 119.99639 * 180.02562 * 17 16 14 20 20 N 1.31608 * 119.99996 * 359.72352 * 19 17 16 21 21 Si 1.86796 * 119.99642 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47516 * 59.99997 * 21 19 17 23 23 H 1.48503 * 109.46937 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47426 * 299.99826 * 21 19 17 25 25 C 1.46925 * 120.63102 * 354.13284 * 10 8 7 26 26 C 1.39184 * 119.74890 * 359.48001 * 7 6 5 27 27 C 1.38915 * 119.84647 * 0.25199 * 26 7 6 28 28 S 1.70652 * 124.24272 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47357 * 90.01737 * 1 2 3 30 30 H 1.09003 * 109.47780 * 210.02483 * 1 2 3 31 31 H 1.09003 * 109.47443 * 330.02383 * 1 2 3 32 32 H 1.07995 * 119.68637 * 0.02562 * 5 4 3 33 33 H 1.07995 * 119.69035 * 180.28014 * 6 5 4 34 34 H 1.09003 * 109.58538 * 6.57509 * 11 10 8 35 35 H 1.09010 * 109.58427 * 246.15496 * 11 10 8 36 36 H 1.09000 * 109.48956 * 294.68370 * 12 11 10 37 37 H 1.09000 * 109.52507 * 174.60400 * 12 11 10 38 38 H 1.09002 * 109.45560 * 178.61650 * 13 12 11 39 39 H 1.09003 * 109.44328 * 58.65324 * 13 12 11 40 40 H 0.97002 * 119.99839 * 335.00326 * 16 14 13 41 41 H 0.97006 * 120.00047 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.58946 * 113.84854 * 25 10 8 43 43 H 1.08993 * 109.58787 * 353.41589 * 25 10 8 44 44 H 1.07995 * 120.08393 * 180.22926 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5634 0.9104 -0.0005 5 6 4.5762 1.8950 -0.0011 6 6 5.8865 1.5396 0.0037 7 6 6.2597 0.1884 -0.0017 8 6 7.6874 -0.1858 -0.0018 9 8 8.4753 0.4225 -0.7001 10 7 8.1178 -1.2018 0.7721 11 6 9.5082 -1.6695 0.6885 12 6 10.1184 -1.6557 2.0936 13 6 9.2351 -2.4754 3.0370 14 6 7.8418 -1.8465 3.1093 15 1 7.9248 -0.8178 3.4601 16 7 7.0066 -2.6135 4.0368 17 6 5.9467 -2.0120 4.6612 18 1 5.7262 -0.9723 4.4697 19 6 5.1556 -2.7388 5.5405 20 7 5.4210 -4.0073 5.7697 21 14 3.7093 -1.9184 6.3917 22 1 2.7503 -1.4233 5.3717 23 1 3.0302 -2.9025 7.2724 24 1 4.1972 -0.7774 7.2074 25 6 7.2058 -1.8624 1.7157 26 6 5.2788 -0.7991 -0.0012 27 6 3.9368 -0.4404 -0.0006 28 16 2.4672 -1.4107 -0.0006 29 1 -0.3634 -0.0003 -1.0277 30 1 -0.3635 -0.8897 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 4.3057 2.9405 -0.0008 33 1 6.6483 2.3050 0.0077 34 1 10.0778 -1.0076 0.0361 35 1 9.5290 -2.6843 0.2910 36 1 10.1799 -0.6287 2.4533 37 1 11.1175 -2.0903 2.0611 38 1 9.6802 -2.4876 4.0320 39 1 9.1539 -3.4960 2.6629 40 1 7.2044 -3.5475 4.2087 41 1 4.8684 -4.5150 6.3844 42 1 7.0390 -2.8929 1.4021 43 1 6.2564 -1.3278 1.7413 44 1 5.5603 -1.8417 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000619836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:44 Heat of formation + Delta-G solvation = 37.347083 kcal Electronic energy + Delta-G solvation = -27987.942211 eV Core-core repulsion = 24224.946177 eV Total energy + Delta-G solvation = -3762.996034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.81026 -39.75948 -37.52875 -36.75716 -34.35707 -32.84131 -31.76771 -31.49728 -30.91397 -28.67772 -28.17643 -25.44737 -24.36573 -23.89188 -23.01595 -21.99328 -21.05050 -20.39036 -19.37905 -18.30363 -17.35941 -17.15590 -16.42176 -15.68660 -15.57784 -15.25171 -15.06271 -14.56833 -14.52066 -14.13035 -13.93606 -13.75871 -13.59648 -13.30529 -13.27052 -13.05977 -12.74389 -12.58472 -12.54911 -12.33265 -12.28876 -11.53782 -11.36261 -11.08165 -10.96346 -10.89087 -10.67850 -10.57733 -10.36391 -10.20407 -10.05990 -9.79265 -9.75391 -9.68986 -9.14751 -8.69511 -8.42608 -8.14296 -7.08890 -5.87063 -3.17280 0.12595 1.07753 1.13948 1.62863 1.97926 2.84670 3.12554 3.37741 3.42623 3.43693 3.66015 3.73045 4.41206 4.48136 4.56612 4.78338 5.01247 5.06719 5.09020 5.15901 5.17537 5.19007 5.23809 5.38253 5.40012 5.55011 5.60823 5.63142 5.68534 5.75104 5.85610 5.91948 6.01389 6.03730 6.04998 6.15747 6.25014 6.29062 6.29624 6.49825 6.65279 6.70688 6.86693 7.49547 7.52703 7.61746 8.22045 8.31026 9.42952 9.96515 10.32089 11.34888 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.007123 B = 0.005494 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3929.974041 B = 5095.644599 C = 8168.860166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 N -0.474 5.474 4 C 0.104 3.896 5 C -0.073 4.073 6 C -0.057 4.057 7 C -0.110 4.110 8 C 0.563 3.437 9 O -0.546 6.546 10 N -0.598 5.598 11 C 0.112 3.888 12 C -0.129 4.129 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.052 0.948 16 N -0.717 5.717 17 C -0.246 4.246 18 H 0.069 0.931 19 C -0.006 4.006 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.075 3.925 26 C -0.024 4.024 27 C -0.191 4.191 28 S 0.121 5.879 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 5.157 -13.427 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.193 4.193 3 N -0.189 5.189 4 C -0.018 4.018 5 C -0.094 4.094 6 C -0.079 4.079 7 C -0.117 4.117 8 C 0.351 3.649 9 O -0.425 6.425 10 N -0.330 5.330 11 C -0.010 4.010 12 C -0.168 4.168 13 C -0.165 4.165 14 C 0.057 3.943 15 H 0.070 0.930 16 N -0.358 5.358 17 C -0.377 4.377 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.050 4.050 26 C -0.046 4.046 27 C -0.310 4.310 28 S 0.378 5.622 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.554 4.975 -13.675 14.774 hybrid contribution -0.278 0.630 0.751 1.019 sum -2.832 5.606 -12.924 14.370 Atomic orbital electron populations 1.20577 0.84793 1.04797 1.04167 1.26826 1.01935 0.91196 0.99361 1.66141 1.04095 1.31360 1.17299 1.19282 0.89150 0.91669 1.01662 1.20235 0.90072 0.98564 1.00517 1.20635 0.95847 0.94900 0.96524 1.19790 0.92954 0.94140 1.04829 1.18129 0.87227 0.79717 0.79837 1.90754 1.55887 1.52890 1.42955 1.48196 1.12144 1.33743 1.38945 1.21623 0.81628 0.99796 0.97938 1.21877 0.98822 1.01288 0.94800 1.21834 0.96002 0.99129 0.99515 1.20481 0.89359 0.96169 0.88310 0.92990 1.42369 1.32791 1.11585 1.49037 1.19161 1.04322 0.94932 1.19248 0.91305 1.24709 0.99511 0.95868 1.00148 1.69638 1.41261 1.07220 1.39576 0.86350 0.82649 0.78306 0.79435 1.21136 1.21515 1.21143 1.23268 0.93929 0.97157 0.90652 1.20583 0.88845 0.99921 0.95300 1.23687 0.98745 0.96843 1.11686 1.84094 0.95166 1.09822 1.73092 0.89148 0.89527 0.88928 0.84269 0.84001 0.89226 0.91485 0.91570 0.90937 0.91331 0.92005 0.77973 0.93315 0.91554 0.89222 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.44 36.00 0.38 -0.31 16 2 C 0.09 1.15 7.29 -13.86 -0.10 1.04 16 3 N -0.47 -7.06 10.56 -8.96 -0.09 -7.16 16 4 C 0.10 1.59 7.00 -84.88 -0.59 1.00 16 5 C -0.07 -0.99 10.03 -39.33 -0.39 -1.39 16 6 C -0.06 -0.80 9.55 -39.74 -0.38 -1.17 16 7 C -0.11 -1.69 5.08 -105.00 -0.53 -2.22 16 8 C 0.56 9.15 7.29 -12.45 -0.09 9.06 16 9 O -0.55 -9.93 16.37 5.29 0.09 -9.84 16 10 N -0.60 -9.14 2.97 -173.97 -0.52 -9.66 16 11 C 0.11 1.48 6.44 -3.71 -0.02 1.46 16 12 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 13 C -0.13 -1.94 5.35 -26.69 -0.14 -2.09 16 14 C 0.17 3.15 2.92 -67.81 -0.20 2.95 16 15 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 16 N -0.72 -16.82 5.12 -53.31 -0.27 -17.09 16 17 C -0.25 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -26.89 13.06 55.49 0.72 -26.17 16 21 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.07 1.26 4.51 -3.71 -0.02 1.24 16 26 C -0.02 -0.36 7.41 -38.98 -0.29 -0.65 16 27 C -0.19 -2.92 6.54 -38.61 -0.25 -3.17 16 28 S 0.12 1.60 23.11 -107.50 -2.48 -0.88 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.09 1.20 7.00 -51.93 -0.36 0.83 16 35 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.39 9.60 7.80 -40.82 -0.32 9.28 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 42 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 43 H 0.09 1.62 4.81 -51.93 -0.25 1.37 16 44 H 0.14 1.99 6.71 -52.49 -0.35 1.64 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -31.74 373.35 -10.90 -42.64 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.90 Total: 8.64 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -3.05 Total: -2.96 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.16 Total: -60.08 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.48 Total: -0.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.74 -10.90 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000619836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.988 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds