Wall clock time and date at job start Wed Apr 1 2020 03:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28062 * 124.24664 * 2 1 4 4 C 1.34411 * 117.92166 * 180.02562 * 3 2 1 5 5 C 1.41236 * 129.48265 * 179.97438 * 4 3 2 6 6 C 1.35758 * 120.63644 * 179.71621 * 5 4 3 7 7 C 1.40193 * 120.60873 * 0.56761 * 6 5 4 8 8 C 1.47596 * 120.12287 * 179.71022 * 7 6 5 9 9 O 1.21590 * 119.99606 * 179.72784 * 8 7 6 10 10 N 1.34776 * 119.99659 * 359.72404 * 8 7 6 11 11 C 1.46507 * 119.99522 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.49549 * 324.94097 * 11 10 8 13 13 C 1.53103 * 109.51266 * 204.87333 * 11 10 8 14 14 C 1.53046 * 109.50171 * 178.68490 * 13 11 10 15 15 C 1.53192 * 109.33691 * 61.34884 * 14 13 11 16 16 N 1.46925 * 108.77573 * 305.34892 * 15 14 13 17 17 C 1.36939 * 120.62956 * 233.63611 * 16 15 14 18 18 H 1.08004 * 120.00334 * 152.62623 * 17 16 15 19 19 C 1.38814 * 120.00086 * 332.61713 * 17 16 15 20 20 N 1.31614 * 120.00208 * 159.34648 * 19 17 16 21 21 Si 1.86805 * 119.99784 * 339.34741 * 19 17 16 22 22 H 1.48502 * 109.46940 * 92.96249 * 21 19 17 23 23 H 1.48497 * 109.47139 * 212.96129 * 21 19 17 24 24 H 1.48499 * 109.47200 * 332.96020 * 21 19 17 25 25 C 1.46928 * 118.74259 * 53.60637 * 16 15 14 26 26 C 1.39175 * 119.75351 * 359.43626 * 7 6 5 27 27 C 1.38915 * 119.84594 * 0.27666 * 26 7 6 28 28 S 1.70649 * 124.24300 * 180.02562 * 2 1 3 29 29 H 1.09010 * 109.47050 * 269.96667 * 1 2 3 30 30 H 1.09002 * 109.46926 * 29.95749 * 1 2 3 31 31 H 1.08992 * 109.47212 * 149.96259 * 1 2 3 32 32 H 1.08005 * 119.68614 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.69735 * 180.27980 * 6 5 4 34 34 H 0.96994 * 120.00515 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.50820 * 58.65793 * 13 11 10 36 36 H 1.09001 * 109.44767 * 298.67623 * 13 11 10 37 37 H 1.08997 * 109.49698 * 301.38081 * 14 13 11 38 38 H 1.08999 * 109.49437 * 181.31516 * 14 13 11 39 39 H 1.08996 * 109.58846 * 65.13656 * 15 14 13 40 40 H 1.08995 * 109.58480 * 185.42002 * 15 14 13 41 41 H 0.97002 * 120.00185 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.58113 * 66.18288 * 25 16 15 43 43 H 1.08991 * 109.58732 * 186.45837 * 25 16 15 44 44 H 1.07998 * 120.07955 * 180.29553 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5635 0.9105 -0.0005 5 6 4.5762 1.8950 -0.0011 6 6 5.8865 1.5398 0.0042 7 6 6.2597 0.1884 -0.0016 8 6 7.6875 -0.1857 -0.0022 9 8 8.0086 -1.3584 -0.0022 10 7 8.6351 0.7726 -0.0028 11 6 10.0523 0.4012 -0.0040 12 1 10.1915 -0.5047 0.5860 13 6 10.8794 1.5380 0.6025 14 6 12.3560 1.1365 0.6312 15 6 12.8436 0.8937 -0.8006 16 7 11.9628 -0.0937 -1.4391 17 6 12.4822 -1.2201 -2.0192 18 1 11.8855 -2.1179 -2.0853 19 6 13.7759 -1.2081 -2.5225 20 7 14.4227 -2.3402 -2.7022 21 14 14.5987 0.4149 -2.9448 22 1 15.3816 0.8916 -1.7765 23 1 15.5067 0.2227 -4.1040 24 1 13.5619 1.4206 -3.2896 25 6 10.5138 0.1501 -1.4430 26 6 5.2789 -0.7990 -0.0010 27 6 3.9368 -0.4404 -0.0005 28 16 2.4672 -1.4107 -0.0006 29 1 -0.3634 -0.0006 1.0278 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5144 32 1 4.3057 2.9406 -0.0017 33 1 6.6483 2.3051 0.0082 34 1 8.3789 1.7081 -0.0025 35 1 10.5369 1.7354 1.6183 36 1 10.7592 2.4369 -0.0022 37 1 12.4735 0.2237 1.2153 38 1 12.9417 1.9363 1.0844 39 1 12.8118 1.8281 -1.3608 40 1 13.8655 0.5151 -0.7793 41 1 15.3265 -2.3318 -3.0542 42 1 10.2920 1.0239 -2.0557 43 1 9.9979 -0.7205 -1.8478 44 1 5.5605 -1.8416 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009096023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:33 Heat of formation + Delta-G solvation = 46.371347 kcal Electronic energy + Delta-G solvation = -26834.979697 eV Core-core repulsion = 23072.374985 eV Total energy + Delta-G solvation = -3762.604713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.93898 -39.74442 -37.86531 -36.90879 -34.57085 -32.67258 -32.03544 -31.51992 -30.84661 -29.75059 -28.28405 -25.32514 -24.70920 -23.84455 -22.33283 -21.98300 -21.63561 -20.32968 -19.81098 -18.93370 -17.67740 -16.86615 -16.32766 -16.17507 -15.59801 -15.44390 -15.29557 -14.92311 -14.39950 -14.31026 -14.01008 -13.86782 -13.76353 -13.48937 -13.44987 -13.22635 -12.99034 -12.74321 -12.65204 -12.38111 -12.10506 -11.76152 -11.54428 -11.25910 -11.16949 -10.92760 -10.77738 -10.57178 -10.17756 -10.07660 -10.04517 -9.86430 -9.72570 -9.46370 -9.10759 -8.96882 -8.55728 -8.48121 -6.97137 -5.91935 -3.28661 -0.21297 0.77328 0.79785 1.29370 1.65528 2.82694 3.14119 3.31931 3.40445 3.48774 3.51483 3.55515 4.18203 4.46576 4.50756 4.54501 4.70385 4.76359 4.89089 4.92439 5.01121 5.05707 5.18268 5.25853 5.36408 5.40080 5.42416 5.50032 5.69192 5.75631 5.79336 5.87281 5.92273 6.01174 6.16199 6.19382 6.29276 6.40383 6.47815 6.60265 6.64018 6.75405 6.91772 7.17651 7.56799 7.97832 8.26431 8.36868 8.96323 9.73878 10.09296 11.23943 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025032 B = 0.002150 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.314598 B =13017.264095 C =13559.088451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 N -0.473 5.473 4 C 0.103 3.897 5 C -0.071 4.071 6 C -0.076 4.076 7 C -0.113 4.113 8 C 0.556 3.444 9 O -0.525 6.525 10 N -0.716 5.716 11 C 0.125 3.875 12 H 0.093 0.907 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.121 3.879 16 N -0.601 5.601 17 C -0.258 4.258 18 H 0.087 0.913 19 C 0.023 3.977 20 N -0.907 5.907 21 Si 0.883 3.117 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.144 3.856 26 C -0.005 4.005 27 C -0.196 4.196 28 S 0.116 5.884 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.395 0.605 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.262 0.738 42 H 0.023 0.977 43 H 0.068 0.932 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.384 9.780 8.529 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.191 4.191 3 N -0.188 5.188 4 C -0.018 4.018 5 C -0.092 4.092 6 C -0.097 4.097 7 C -0.120 4.120 8 C 0.342 3.658 9 O -0.401 6.401 10 N -0.367 5.367 11 C 0.020 3.980 12 H 0.111 0.889 13 C -0.154 4.154 14 C -0.172 4.172 15 C -0.004 4.004 16 N -0.325 5.325 17 C -0.387 4.387 18 H 0.104 0.896 19 C -0.176 4.176 20 N -0.550 5.550 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.017 3.983 26 C -0.027 4.027 27 C -0.314 4.314 28 S 0.372 5.628 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.230 0.770 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.559 8.254 8.443 29.066 hybrid contribution 1.085 2.086 -0.305 2.371 sum -25.474 10.340 8.138 28.672 Atomic orbital electron populations 1.20596 0.84631 1.04750 1.04435 1.26872 1.01985 0.91058 0.99223 1.66159 1.04101 1.31342 1.17159 1.19312 0.89164 0.91702 1.01628 1.20251 0.90148 0.98662 1.00174 1.20834 0.96064 0.95231 0.97603 1.19968 0.93600 0.93554 1.04910 1.17987 0.84814 0.85919 0.77126 1.90853 1.82528 1.17841 1.48908 1.46003 1.06893 1.09016 1.74754 1.21773 0.77161 0.98783 1.00312 0.88915 1.21697 0.96298 0.97512 0.99937 1.21999 0.94238 1.01163 0.99761 1.21400 0.95614 0.92511 0.90871 1.44287 1.00312 1.23553 1.64320 1.18951 0.98640 0.88728 1.32351 0.89552 1.25273 0.96951 0.96415 0.98963 1.69842 1.11831 1.25365 1.47947 0.86946 0.78898 0.85542 0.77227 1.21619 1.23170 1.19660 1.21216 0.85444 0.99434 0.92231 1.20463 0.88091 1.00740 0.93455 1.23751 0.98860 0.96779 1.12036 1.84066 0.95211 1.09991 1.73506 0.88974 0.88835 0.89538 0.84163 0.84265 0.77049 0.92326 0.92039 0.91337 0.92182 0.95640 0.90731 0.92779 0.95938 0.91355 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.44 36.00 0.38 0.01 16 2 C 0.09 0.79 7.29 -13.85 -0.10 0.68 16 3 N -0.47 -5.15 10.56 -8.96 -0.09 -5.24 16 4 C 0.10 1.16 7.00 -84.88 -0.59 0.57 16 5 C -0.07 -0.67 10.03 -39.33 -0.39 -1.06 16 6 C -0.08 -0.69 9.44 -39.74 -0.38 -1.06 16 7 C -0.11 -1.35 5.87 -105.00 -0.62 -1.97 16 8 C 0.56 8.22 7.73 -12.44 -0.10 8.13 16 9 O -0.52 -10.07 16.00 5.29 0.08 -9.98 16 10 N -0.72 -9.38 5.03 -54.68 -0.28 -9.66 16 11 C 0.12 2.06 2.60 -67.78 -0.18 1.89 16 12 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 13 C -0.12 -1.65 5.36 -26.65 -0.14 -1.79 16 14 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 15 C 0.12 2.60 4.20 -3.71 -0.02 2.58 16 16 N -0.60 -14.45 2.77 -172.32 -0.48 -14.92 16 17 C -0.26 -7.40 10.03 -15.06 -0.15 -7.56 16 18 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 19 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 20 N -0.91 -28.22 13.97 55.49 0.78 -27.44 16 21 Si 0.88 22.44 24.35 -169.99 -4.14 18.30 16 22 H -0.29 -7.00 6.62 56.52 0.37 -6.63 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 24 H -0.27 -6.75 6.63 56.52 0.37 -6.37 16 25 C 0.14 2.93 6.09 -3.71 -0.02 2.91 16 26 C 0.00 -0.05 9.62 -38.98 -0.37 -0.43 16 27 C -0.20 -2.21 6.54 -38.61 -0.25 -2.46 16 28 S 0.12 1.01 23.11 -107.50 -2.48 -1.47 16 29 H 0.09 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.14 0.85 6.38 -52.49 -0.33 0.51 16 34 H 0.39 3.73 6.62 -40.82 -0.27 3.46 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.53 7.08 -51.93 -0.37 0.17 16 40 H 0.07 1.76 4.50 -51.93 -0.23 1.53 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 44 H 0.15 1.80 7.64 -52.49 -0.40 1.40 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -35.28 366.99 -10.10 -45.38 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.83 Total: 0.88 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.19 Total: -1.37 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.07 Total: -57.26 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.48 Total: -1.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.28 -10.10 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009096023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.749 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds