Wall clock time and date at job start Wed Apr 1 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99665 * 2 1 4 4 H 1.48504 * 109.47233 * 240.00039 * 3 2 1 5 5 H 1.48499 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47426 * 119.99551 * 3 2 1 7 7 C 1.38804 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00423 * 197.85205 * 7 2 1 9 9 N 1.36933 * 120.00275 * 17.85645 * 7 2 1 10 10 C 1.46851 * 120.38754 * 208.90909 * 9 7 2 11 11 C 1.53350 * 108.81072 * 236.88298 * 10 9 7 12 12 C 1.53191 * 108.76730 * 308.67689 * 11 10 9 13 13 C 1.52840 * 117.66173 * 269.97852 * 12 11 10 14 14 C 1.52813 * 117.71413 * 201.11621 * 12 11 10 15 15 H 1.09005 * 117.50402 * 215.12619 * 14 12 11 16 16 N 1.46494 * 117.50345 * 0.14522 * 14 12 11 17 17 C 1.34774 * 120.00034 * 204.99551 * 16 14 12 18 18 O 1.21732 * 120.00001 * 0.02562 * 17 16 14 19 19 C 1.46463 * 119.99978 * 180.02562 * 17 16 14 20 20 C 1.37460 * 125.80360 * 179.97438 * 19 17 16 21 21 C 1.40656 * 107.55293 * 179.97438 * 20 19 17 22 22 S 1.76027 * 142.39457 * 180.02562 * 21 20 19 23 23 C 1.75596 * 91.31000 * 179.97438 * 22 21 20 24 24 C 1.32773 * 110.47293 * 359.97438 * 23 22 21 25 25 C 1.38245 * 108.03500 * 0.02562 * 21 20 19 26 26 N 1.37914 * 125.80310 * 359.97438 * 19 17 16 27 27 H 0.96993 * 125.69113 * 0.04512 * 26 19 17 28 28 C 1.53187 * 115.07279 * 55.45457 * 12 11 10 29 29 C 1.46843 * 120.38384 * 28.88253 * 9 7 2 30 30 H 0.96999 * 120.00406 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58229 * 117.08348 * 10 9 7 32 32 H 1.08998 * 109.57822 * 356.67362 * 10 9 7 33 33 H 1.09003 * 109.58744 * 188.90023 * 11 10 9 34 34 H 1.09000 * 109.58952 * 68.46178 * 11 10 9 35 35 H 1.09003 * 117.50358 * 144.81115 * 13 12 11 36 36 H 1.09003 * 117.50417 * 359.76406 * 13 12 11 37 37 H 0.97001 * 119.99926 * 24.99986 * 16 14 12 38 38 H 1.08001 * 126.22667 * 0.03605 * 20 19 17 39 39 H 1.08001 * 124.75895 * 180.02562 * 23 22 21 40 40 H 1.08000 * 122.15703 * 180.28531 * 24 23 22 41 41 H 1.08992 * 109.59122 * 64.34221 * 28 12 11 42 42 H 1.08998 * 109.58668 * 184.77392 * 28 12 11 43 43 H 1.08999 * 109.58473 * 242.92799 * 29 9 7 44 44 H 1.09006 * 109.57563 * 3.32465 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0513 -1.2245 0.2873 9 7 1.3752 -2.3596 -0.3626 10 6 1.8054 -3.6488 0.1937 11 6 2.1669 -4.5899 -0.9618 12 6 1.0061 -4.6121 -1.9612 13 6 -0.0882 -5.6590 -1.7545 14 6 0.9063 -5.8072 -2.9082 15 1 0.5386 -5.6206 -3.9172 16 7 1.9280 -6.8505 -2.7908 17 6 2.2162 -7.6336 -3.8492 18 8 1.6279 -7.4736 -4.9028 19 6 3.2372 -8.6770 -3.7316 20 6 3.6241 -9.5396 -4.7295 21 6 4.6244 -10.3765 -4.2027 22 16 5.6919 -11.7107 -4.6256 23 6 6.3805 -11.7247 -3.0104 24 6 5.8196 -10.7852 -2.2583 25 6 4.8360 -10.0137 -2.8856 26 7 3.9740 -8.9612 -2.6009 27 1 3.9023 -8.5033 -1.7489 28 6 0.5857 -3.2405 -2.4983 29 6 0.2557 -2.3261 -1.3123 30 1 -0.4851 0.8400 -0.0004 31 1 0.9946 -4.0831 0.7785 32 1 2.6778 -3.4994 0.8297 33 1 2.3355 -5.5951 -0.5753 34 1 3.0688 -4.2305 -1.4573 35 1 -1.1104 -5.3747 -2.0044 36 1 0.0178 -6.3376 -0.9082 37 1 2.3969 -6.9778 -1.9513 38 1 3.2321 -9.5688 -5.7355 39 1 7.1526 -12.4019 -2.6760 40 1 6.1069 -10.6249 -1.2296 41 1 1.4024 -2.8085 -3.0766 42 1 -0.2949 -3.3501 -3.1312 43 1 -0.6511 -2.6783 -0.8207 44 1 0.1084 -1.3061 -1.6673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016912292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:50 Heat of formation + Delta-G solvation = 83.201127 kcal Electronic energy + Delta-G solvation = -26919.525226 eV Core-core repulsion = 23158.517573 eV Total energy + Delta-G solvation = -3761.007653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65749 -39.83017 -38.37340 -35.62603 -35.57683 -33.31697 -31.69617 -31.20811 -30.10040 -28.78723 -28.12684 -24.41707 -24.18264 -23.14894 -22.55394 -21.62436 -20.94508 -20.50029 -20.13808 -18.97816 -18.26766 -16.93184 -16.49834 -16.15484 -15.77425 -15.54770 -14.93428 -14.64903 -14.41009 -14.37748 -14.20770 -13.83865 -13.59937 -13.48472 -13.26278 -13.06990 -12.77140 -12.32881 -12.20610 -11.97567 -11.72970 -11.66768 -11.40376 -11.17214 -11.03714 -10.75604 -10.51575 -10.41858 -10.36347 -10.07070 -10.00713 -9.76735 -9.71034 -9.44585 -8.67813 -8.48738 -8.37903 -8.00185 -6.69301 -5.82969 -3.26551 0.42121 1.20588 1.63468 1.74025 2.41354 2.47941 2.88686 3.07237 3.35520 3.41888 3.43099 4.09455 4.39679 4.45981 4.48911 4.63075 4.86300 5.00519 5.03131 5.04077 5.13961 5.35032 5.39449 5.40342 5.56701 5.57184 5.64811 5.75996 5.94808 5.98287 5.99356 6.11269 6.20864 6.24778 6.34946 6.44664 6.54324 6.57667 6.62818 6.75760 6.88559 6.91472 7.27954 7.32178 7.62636 7.75314 7.93640 8.42251 9.17448 9.80786 10.37139 11.24777 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.002085 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.931934 B =13425.935008 C =14128.061232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.150 3.850 11 C -0.098 4.098 12 C -0.095 4.095 13 C -0.180 4.180 14 C 0.068 3.932 15 H 0.136 0.864 16 N -0.692 5.692 17 C 0.588 3.412 18 O -0.522 6.522 19 C 0.011 3.989 20 C -0.071 4.071 21 C -0.220 4.220 22 S 0.131 5.869 23 C -0.188 4.188 24 C -0.115 4.115 25 C 0.066 3.934 26 N -0.541 5.541 27 H 0.419 0.581 28 C -0.106 4.106 29 C 0.173 3.827 30 H 0.255 0.745 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.395 0.605 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.142 0.858 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -23.403 -5.213 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.096 4.096 13 C -0.219 4.219 14 C -0.037 4.037 15 H 0.154 0.846 16 N -0.341 5.341 17 C 0.375 3.625 18 O -0.398 6.398 19 C -0.104 4.104 20 C -0.101 4.101 21 C -0.340 4.340 22 S 0.391 5.609 23 C -0.324 4.324 24 C -0.148 4.148 25 C -0.052 4.052 26 N -0.144 5.144 27 H 0.258 0.742 28 C -0.146 4.146 29 C 0.047 3.953 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.230 0.770 38 H 0.175 0.825 39 H 0.190 0.810 40 H 0.160 0.840 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.816 -23.863 -7.107 26.413 hybrid contribution 0.380 1.780 2.296 2.930 sum 9.197 -22.082 -4.811 24.400 Atomic orbital electron populations 1.70019 1.05285 1.25722 1.53427 1.25048 0.95256 0.98476 1.00732 0.86387 0.78974 0.83350 0.78154 1.20994 1.21600 1.20881 1.19122 0.92804 0.85031 1.41603 0.91873 1.43963 1.37864 1.01436 1.47838 1.20827 0.97413 0.87121 0.92315 1.21644 0.96326 0.98423 0.97323 1.21980 0.97919 0.91339 0.98367 1.23546 0.96323 1.02498 0.99504 1.21978 0.92994 0.91199 0.97561 0.84598 1.45279 1.40360 1.34618 1.13817 1.16893 0.81361 0.80086 0.84175 1.90872 1.51394 1.69742 1.27779 1.20346 1.00190 1.02321 0.87511 1.20416 0.96558 0.94112 0.99048 1.22701 1.07407 1.05992 0.97889 1.83956 1.34341 1.31468 1.11176 1.25252 1.05938 1.03952 0.97287 1.18916 0.97411 0.97000 1.01489 1.18358 0.98124 0.94393 0.94360 1.41972 1.31464 1.28530 1.12449 0.74249 1.21895 0.99813 0.92928 0.99922 1.20776 0.88771 0.98748 0.87023 0.93511 0.96290 0.92733 0.94000 0.91691 0.88048 0.89073 0.77016 0.82485 0.80975 0.84039 0.92019 0.92856 0.96300 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 11.23 55.49 0.62 -25.03 16 2 C 0.00 0.10 4.88 -17.43 -0.09 0.02 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.85 9.54 -15.06 -0.14 -7.00 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -14.22 2.94 -172.26 -0.51 -14.72 16 10 C 0.15 2.96 6.52 -3.67 -0.02 2.93 16 11 C -0.10 -1.53 5.37 -26.45 -0.14 -1.68 16 12 C -0.09 -1.49 1.94 -154.49 -0.30 -1.79 16 13 C -0.18 -2.48 9.86 -26.80 -0.26 -2.74 16 14 C 0.07 0.95 6.14 -68.01 -0.42 0.53 16 15 H 0.14 2.06 7.40 -51.93 -0.38 1.67 16 16 N -0.69 -8.32 5.34 -55.26 -0.30 -8.61 16 17 C 0.59 7.88 7.78 -12.95 -0.10 7.78 16 18 O -0.52 -8.73 16.43 5.16 0.08 -8.64 16 19 C 0.01 0.13 7.01 -82.10 -0.58 -0.45 16 20 C -0.07 -0.82 10.60 -38.95 -0.41 -1.23 16 21 C -0.22 -2.33 7.26 -38.67 -0.28 -2.61 16 22 S 0.13 1.06 23.31 -107.50 -2.51 -1.44 16 23 C -0.19 -1.24 11.13 28.86 0.32 -0.92 16 24 C -0.11 -0.86 10.16 -40.84 -0.42 -1.27 16 25 C 0.07 0.64 7.67 -84.00 -0.64 0.00 16 26 N -0.54 -4.93 6.14 -7.34 -0.05 -4.97 16 27 H 0.42 2.67 8.14 -40.82 -0.33 2.34 16 28 C -0.11 -1.96 5.83 -26.45 -0.15 -2.11 16 29 C 0.17 3.97 5.40 -3.67 -0.02 3.95 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 33 H 0.04 0.52 6.75 -51.93 -0.35 0.16 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.40 3.81 6.20 -40.82 -0.25 3.56 16 38 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 2.37 5.93 -51.93 -0.31 2.06 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -31.81 373.06 -11.52 -43.33 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.81 Total: 4.73 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -3.66 Total: -6.59 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.22 Total: -53.34 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.81 -11.52 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016912292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.534 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds