Wall clock time and date at job start Wed Apr 1 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99665 * 2 1 4 4 H 1.48504 * 109.47233 * 240.00039 * 3 2 1 5 5 H 1.48499 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47426 * 119.99551 * 3 2 1 7 7 C 1.38804 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00423 * 197.85205 * 7 2 1 9 9 N 1.36933 * 120.00275 * 17.85645 * 7 2 1 10 10 C 1.46851 * 120.38754 * 208.90909 * 9 7 2 11 11 C 1.53350 * 108.81072 * 236.88298 * 10 9 7 12 12 C 1.53191 * 108.76730 * 308.67689 * 11 10 9 13 13 C 1.52840 * 117.66173 * 269.97852 * 12 11 10 14 14 C 1.52813 * 117.71413 * 201.11621 * 12 11 10 15 15 H 1.09005 * 117.50402 * 215.12619 * 14 12 11 16 16 N 1.46494 * 117.50345 * 0.14522 * 14 12 11 17 17 C 1.34774 * 120.00034 * 204.99551 * 16 14 12 18 18 O 1.21732 * 120.00001 * 0.02562 * 17 16 14 19 19 C 1.46463 * 119.99978 * 180.02562 * 17 16 14 20 20 C 1.37460 * 125.80360 * 179.97438 * 19 17 16 21 21 C 1.40656 * 107.55293 * 179.97438 * 20 19 17 22 22 S 1.76027 * 142.39457 * 180.02562 * 21 20 19 23 23 C 1.75596 * 91.31000 * 179.97438 * 22 21 20 24 24 C 1.32773 * 110.47293 * 359.97438 * 23 22 21 25 25 C 1.38245 * 108.03500 * 0.02562 * 21 20 19 26 26 N 1.37914 * 125.80310 * 359.97438 * 19 17 16 27 27 H 0.96993 * 125.69113 * 0.04512 * 26 19 17 28 28 C 1.53187 * 115.07279 * 55.45457 * 12 11 10 29 29 C 1.46843 * 120.38384 * 28.88253 * 9 7 2 30 30 H 0.96999 * 120.00406 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58229 * 117.08348 * 10 9 7 32 32 H 1.08998 * 109.57822 * 356.67362 * 10 9 7 33 33 H 1.09003 * 109.58744 * 188.90023 * 11 10 9 34 34 H 1.09000 * 109.58952 * 68.46178 * 11 10 9 35 35 H 1.09003 * 117.50358 * 144.81115 * 13 12 11 36 36 H 1.09003 * 117.50417 * 359.76406 * 13 12 11 37 37 H 0.97001 * 119.99926 * 24.99986 * 16 14 12 38 38 H 1.08001 * 126.22667 * 0.03605 * 20 19 17 39 39 H 1.08001 * 124.75895 * 180.02562 * 23 22 21 40 40 H 1.08000 * 122.15703 * 180.28531 * 24 23 22 41 41 H 1.08992 * 109.59122 * 64.34221 * 28 12 11 42 42 H 1.08998 * 109.58668 * 184.77392 * 28 12 11 43 43 H 1.08999 * 109.58473 * 242.92799 * 29 9 7 44 44 H 1.09006 * 109.57563 * 3.32465 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0513 -1.2245 0.2873 9 7 1.3752 -2.3596 -0.3626 10 6 1.8054 -3.6488 0.1937 11 6 2.1669 -4.5899 -0.9618 12 6 1.0061 -4.6121 -1.9612 13 6 -0.0882 -5.6590 -1.7545 14 6 0.9063 -5.8072 -2.9082 15 1 0.5386 -5.6206 -3.9172 16 7 1.9280 -6.8505 -2.7908 17 6 2.2162 -7.6336 -3.8492 18 8 1.6279 -7.4736 -4.9028 19 6 3.2372 -8.6770 -3.7316 20 6 3.6241 -9.5396 -4.7295 21 6 4.6244 -10.3765 -4.2027 22 16 5.6919 -11.7107 -4.6256 23 6 6.3805 -11.7247 -3.0104 24 6 5.8196 -10.7852 -2.2583 25 6 4.8360 -10.0137 -2.8856 26 7 3.9740 -8.9612 -2.6009 27 1 3.9023 -8.5033 -1.7489 28 6 0.5857 -3.2405 -2.4983 29 6 0.2557 -2.3261 -1.3123 30 1 -0.4851 0.8400 -0.0004 31 1 0.9946 -4.0831 0.7785 32 1 2.6778 -3.4994 0.8297 33 1 2.3355 -5.5951 -0.5753 34 1 3.0688 -4.2305 -1.4573 35 1 -1.1104 -5.3747 -2.0044 36 1 0.0178 -6.3376 -0.9082 37 1 2.3969 -6.9778 -1.9513 38 1 3.2321 -9.5688 -5.7355 39 1 7.1526 -12.4019 -2.6760 40 1 6.1069 -10.6249 -1.2296 41 1 1.4024 -2.8085 -3.0766 42 1 -0.2949 -3.3501 -3.1312 43 1 -0.6511 -2.6783 -0.8207 44 1 0.1084 -1.3061 -1.6673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016912292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:49 Heat of formation + Delta-G solvation = 64.055512 kcal Electronic energy + Delta-G solvation = -26920.355442 eV Core-core repulsion = 23158.517573 eV Total energy + Delta-G solvation = -3761.837870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.43665 -40.95262 -39.62364 -37.18052 -36.26389 -34.62673 -33.40982 -32.00663 -31.68176 -30.13784 -29.19016 -26.25909 -25.02561 -24.09081 -23.86958 -22.97066 -22.17238 -21.43624 -21.01937 -19.85494 -19.72804 -18.38154 -17.57257 -17.38243 -16.76078 -16.46050 -16.39710 -15.83865 -15.62754 -15.29013 -15.27966 -15.03952 -14.99499 -14.85459 -14.55610 -14.20339 -13.89869 -13.81136 -13.32952 -13.12531 -12.91041 -12.83317 -12.66556 -12.57692 -12.51625 -12.30488 -12.05758 -11.80564 -11.75297 -11.51057 -11.42763 -11.26403 -10.78774 -10.75945 -10.48448 -9.84093 -9.12201 -8.66610 -8.63033 -7.87123 -5.33169 -0.28529 0.57651 0.81397 1.15540 1.45501 1.48495 1.54610 1.67851 1.77332 1.95919 2.10431 2.50703 2.91011 3.27750 3.57521 3.63240 3.75823 3.80686 3.83163 3.94498 3.98438 4.09478 4.36249 4.49849 4.51203 4.57440 4.70875 4.75613 4.81358 4.84113 4.90607 4.94142 5.00783 5.05641 5.08433 5.12405 5.28084 5.34316 5.36435 5.40415 5.53258 5.54985 5.64795 5.76837 6.22629 6.39469 6.40445 6.94060 7.15728 7.88256 8.38707 9.17776 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.002085 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.931934 B =13425.935008 C =14128.061232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.050 4.050 3 Si 0.963 3.037 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.145 3.855 11 C -0.084 4.084 12 C -0.113 4.113 13 C -0.166 4.166 14 C 0.084 3.916 15 H 0.124 0.876 16 N -0.680 5.680 17 C 0.592 3.408 18 O -0.562 6.562 19 C -0.005 4.005 20 C -0.082 4.082 21 C -0.253 4.253 22 S 0.129 5.871 23 C -0.168 4.168 24 C -0.129 4.129 25 C 0.072 3.928 26 N -0.530 5.530 27 H 0.432 0.568 28 C -0.095 4.095 29 C 0.180 3.820 30 H 0.250 0.750 31 H 0.019 0.981 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.409 0.591 38 H 0.152 0.848 39 H 0.207 0.793 40 H 0.169 0.831 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.001 0.999 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.241 -25.920 -4.196 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.246 4.246 3 Si 0.791 3.209 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.332 5.332 10 C 0.019 3.981 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.204 4.204 14 C -0.022 4.022 15 H 0.142 0.858 16 N -0.329 5.329 17 C 0.380 3.620 18 O -0.441 6.441 19 C -0.120 4.120 20 C -0.113 4.113 21 C -0.373 4.373 22 S 0.388 5.612 23 C -0.304 4.304 24 C -0.162 4.162 25 C -0.049 4.049 26 N -0.134 5.134 27 H 0.273 0.727 28 C -0.134 4.134 29 C 0.055 3.945 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.246 0.754 38 H 0.170 0.830 39 H 0.224 0.776 40 H 0.187 0.813 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.019 0.981 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.931 -26.399 -6.048 29.206 hybrid contribution -0.194 2.431 1.988 3.147 sum 10.737 -23.968 -4.060 26.575 Atomic orbital electron populations 1.70166 1.06612 1.25893 1.55156 1.25769 0.95983 1.01444 1.01357 0.85412 0.77658 0.79526 0.78288 1.20708 1.22108 1.19980 1.19451 0.93059 0.86332 1.40491 0.91762 1.44231 1.37902 1.02427 1.48605 1.21002 0.97238 0.85943 0.93870 1.21470 0.95718 0.99537 0.95557 1.21818 0.99430 0.90433 0.99750 1.23637 0.95912 1.01055 0.99789 1.21709 0.93224 0.90310 0.96983 0.85786 1.45108 1.39904 1.33710 1.14225 1.17074 0.81135 0.80139 0.83633 1.90850 1.52981 1.70975 1.29304 1.19956 1.00883 1.02501 0.88621 1.20540 0.97052 0.94622 0.99129 1.22954 1.08225 1.07289 0.98797 1.83987 1.33951 1.30517 1.12731 1.25737 1.05424 1.03475 0.95785 1.19216 0.97090 0.96936 1.02933 1.18814 0.97884 0.93954 0.94199 1.41855 1.30822 1.28403 1.12341 0.72697 1.21644 1.00000 0.93839 0.97962 1.20531 0.88137 0.97617 0.88259 0.94120 0.96299 0.92651 0.89671 0.92514 0.87846 0.87018 0.75353 0.83016 0.77617 0.81319 0.93392 0.91377 0.98099 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 11.23 21.65 0.24 -54.62 16 2 C -0.05 -2.77 4.88 84.86 0.41 -2.36 16 3 Si 0.96 44.67 29.59 68.60 2.03 46.70 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.26 -14.25 9.54 84.03 0.80 -13.45 16 8 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 9 N -0.61 -29.70 2.94 -698.90 -2.05 -31.75 16 10 C 0.14 5.55 6.52 86.43 0.56 6.11 16 11 C -0.08 -2.43 5.37 30.78 0.17 -2.27 16 12 C -0.11 -3.37 1.94 -52.17 -0.10 -3.47 16 13 C -0.17 -4.14 9.86 30.55 0.30 -3.84 16 14 C 0.08 2.18 6.14 44.94 0.28 2.46 16 15 H 0.12 3.65 7.40 -2.38 -0.02 3.63 16 16 N -0.68 -14.85 5.34 -446.94 -2.39 -17.24 16 17 C 0.59 15.29 7.78 86.39 0.67 15.96 16 18 O -0.56 -18.86 16.43 -4.45 -0.07 -18.93 16 19 C -0.01 -0.11 7.01 40.15 0.28 0.17 16 20 C -0.08 -1.89 10.60 22.68 0.24 -1.65 16 21 C -0.25 -5.07 7.26 22.86 0.17 -4.90 16 22 S 0.13 1.85 23.31 -56.49 -1.32 0.54 16 23 C -0.17 -1.60 11.13 66.64 0.74 -0.86 16 24 C -0.13 -1.46 10.16 21.49 0.22 -1.24 16 25 C 0.07 1.22 7.67 38.40 0.29 1.51 16 26 N -0.53 -8.46 6.14 -177.14 -1.09 -9.55 16 27 H 0.43 4.18 8.14 -92.71 -0.75 3.42 16 28 C -0.10 -3.53 5.83 30.78 0.18 -3.35 16 29 C 0.18 8.54 5.40 86.43 0.47 9.01 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 33 H 0.08 1.74 6.75 -2.39 -0.02 1.72 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.41 6.51 6.20 -92.71 -0.57 5.93 16 38 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.21 0.49 8.06 -2.91 -0.02 0.47 16 40 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 43 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.05 2.90 5.93 -2.38 -0.01 2.89 16 Total: -1.00 -71.54 373.06 0.76 -70.78 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.28 Total: 16.25 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 5.68 Total: -2.17 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -5.28 Total: -113.16 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.07 Total: -18.93 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.32 Total: 0.54 kcal Total: -71.54 0.76 -70.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016912292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.831 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds