Wall clock time and date at job start Wed Apr 1 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99607 * 2 1 4 4 H 1.48501 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47061 * 300.00289 * 3 2 1 6 6 H 1.48502 * 109.47191 * 60.00064 * 3 2 1 7 7 C 1.38812 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99648 * 197.86165 * 7 2 1 9 9 N 1.36935 * 119.99861 * 17.85361 * 7 2 1 10 10 C 1.46853 * 120.38491 * 208.90389 * 9 7 2 11 11 C 1.53352 * 108.81050 * 236.89021 * 10 9 7 12 12 C 1.53177 * 108.76804 * 308.68384 * 11 10 9 13 13 C 1.52929 * 117.65046 * 269.95064 * 12 11 10 14 14 C 1.52821 * 117.70997 * 201.12218 * 12 11 10 15 15 H 1.09001 * 117.50476 * 0.10674 * 14 12 11 16 16 N 1.46506 * 117.50045 * 215.09827 * 14 12 11 17 17 C 1.34771 * 120.00168 * 154.82251 * 16 14 12 18 18 O 1.21731 * 120.00122 * 0.28198 * 17 16 14 19 19 C 1.46414 * 120.00389 * 180.27273 * 17 16 14 20 20 C 1.35771 * 124.96458 * 179.72220 * 19 17 16 21 21 C 1.38872 * 115.18880 * 179.83056 * 20 19 17 22 22 N 1.39739 * 139.91350 * 180.11969 * 21 20 19 23 23 H 0.96996 * 125.63740 * 0.29402 * 22 21 20 24 24 C 1.36219 * 108.73147 * 180.32415 * 22 21 20 25 25 C 1.34502 * 109.29863 * 359.97438 * 24 22 21 26 26 C 1.38239 * 113.38775 * 0.45370 * 21 20 19 27 27 S 1.75625 * 124.95497 * 0.03158 * 19 17 16 28 28 C 1.53178 * 115.08101 * 55.45096 * 12 11 10 29 29 C 1.46845 * 120.38225 * 28.89267 * 9 7 2 30 30 H 0.96998 * 120.00314 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.57799 * 117.08981 * 10 9 7 32 32 H 1.09004 * 109.57374 * 356.68869 * 10 9 7 33 33 H 1.09005 * 109.58111 * 188.89437 * 11 10 9 34 34 H 1.08999 * 109.58738 * 68.47088 * 11 10 9 35 35 H 1.08998 * 117.52496 * 144.83979 * 13 12 11 36 36 H 1.09002 * 117.52452 * 359.74998 * 13 12 11 37 37 H 0.97000 * 119.99755 * 335.10223 * 16 14 12 38 38 H 1.08009 * 122.40477 * 0.02562 * 20 19 17 39 39 H 1.08004 * 125.34964 * 180.02562 * 24 22 21 40 40 H 1.08004 * 126.07934 * 179.97438 * 25 24 22 41 41 H 1.09001 * 109.59069 * 64.34022 * 28 12 11 42 42 H 1.09000 * 109.59231 * 184.77211 * 28 12 11 43 43 H 1.09001 * 109.57369 * 242.91054 * 29 9 7 44 44 H 1.08999 * 109.58372 * 3.31152 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0513 -1.2247 0.2863 9 7 1.3752 -2.3593 -0.3646 10 6 1.8054 -3.6491 0.1904 11 6 2.1670 -4.5891 -0.9660 12 6 1.0063 -4.6102 -1.9653 13 6 -0.0882 -5.6583 -1.7598 14 6 0.9065 -5.8046 -2.9134 15 1 1.6669 -6.5807 -2.8271 16 7 0.4119 -5.5526 -4.2693 17 6 0.7569 -6.3785 -5.2768 18 8 1.4753 -7.3369 -5.0594 19 6 0.2674 -6.1233 -6.6329 20 6 0.5554 -6.8840 -7.7200 21 6 -0.0212 -6.4577 -8.9093 22 7 -0.0800 -6.8176 -10.2582 23 1 0.3618 -7.5825 -10.6588 24 6 -0.8598 -5.9163 -10.9179 25 6 -1.3048 -4.9924 -10.0475 26 6 -0.7861 -5.3147 -8.7694 27 16 -0.7716 -4.7840 -7.0923 28 6 0.5858 -3.2382 -2.5013 29 6 0.2558 -2.3249 -1.3144 30 1 -0.4850 0.8400 0.0004 31 1 0.9946 -4.0839 0.7748 32 1 2.6778 -3.5001 0.8266 33 1 2.3356 -5.5946 -0.5804 34 1 3.0689 -4.2293 -1.4611 35 1 -1.1106 -5.3747 -2.0096 36 1 0.0179 -6.3384 -0.9146 37 1 -0.1606 -4.7890 -4.4425 38 1 1.1850 -7.7598 -7.6633 39 1 -1.0860 -5.9403 -11.9737 40 1 -1.9432 -4.1533 -10.2816 41 1 1.4025 -2.8056 -3.0791 42 1 -0.2948 -3.3473 -3.1343 43 1 -0.6510 -2.6777 -0.8231 44 1 0.1083 -1.3046 -1.6686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016947210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:29 Heat of formation + Delta-G solvation = 84.554788 kcal Electronic energy + Delta-G solvation = -26877.695406 eV Core-core repulsion = 23116.746452 eV Total energy + Delta-G solvation = -3760.948954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.48648 -39.95137 -38.40756 -35.58971 -35.15383 -33.19428 -31.50578 -31.22408 -30.09051 -28.72017 -28.00535 -24.57871 -24.30384 -22.47862 -22.38065 -21.50992 -21.04812 -20.50625 -19.90932 -18.68726 -18.19071 -17.08183 -16.53978 -15.95341 -15.72456 -15.25241 -14.89529 -14.63334 -14.57699 -14.37208 -14.04109 -13.78629 -13.56416 -13.36098 -13.04153 -13.00164 -12.61242 -12.27366 -12.23629 -11.85826 -11.67231 -11.48022 -11.34746 -11.12944 -10.96408 -10.72175 -10.47622 -10.26681 -10.15804 -9.97925 -9.93146 -9.69004 -9.56746 -9.35077 -8.57749 -8.44146 -8.33474 -7.92726 -6.62173 -5.77445 -3.20188 0.30505 1.20146 1.74466 2.12728 2.33688 2.62122 3.09222 3.12169 3.38132 3.46482 3.48887 4.20600 4.50460 4.51667 4.58146 4.68727 4.97015 4.99251 5.15265 5.16021 5.16812 5.40819 5.47397 5.53202 5.61698 5.65566 5.71248 5.88817 6.07035 6.11160 6.13163 6.17913 6.30445 6.41169 6.47041 6.56239 6.59451 6.66544 6.72466 6.85025 7.02023 7.05280 7.35676 7.44683 7.66833 7.82018 8.11096 8.48188 9.23581 9.87259 10.43932 11.30362 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002485 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.430735 B =11265.321182 C =12557.812591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.096 4.096 13 C -0.181 4.181 14 C 0.069 3.931 15 H 0.134 0.866 16 N -0.688 5.688 17 C 0.595 3.405 18 O -0.535 6.535 19 C -0.236 4.236 20 C -0.031 4.031 21 C 0.022 3.978 22 N -0.557 5.557 23 H 0.420 0.580 24 C 0.058 3.942 25 C -0.171 4.171 26 C -0.186 4.186 27 S 0.171 5.829 28 C -0.106 4.106 29 C 0.174 3.826 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.401 0.599 38 H 0.149 0.851 39 H 0.178 0.822 40 H 0.148 0.852 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.018 0.982 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 -13.877 -20.732 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.097 4.097 13 C -0.220 4.220 14 C -0.037 4.037 15 H 0.152 0.848 16 N -0.337 5.337 17 C 0.381 3.619 18 O -0.414 6.414 19 C -0.356 4.356 20 C -0.067 4.067 21 C -0.091 4.091 22 N -0.159 5.159 23 H 0.257 0.743 24 C -0.076 4.076 25 C -0.201 4.201 26 C -0.309 4.309 27 S 0.434 5.566 28 C -0.145 4.145 29 C 0.048 3.952 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.236 0.764 38 H 0.167 0.833 39 H 0.196 0.804 40 H 0.166 0.834 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.036 0.964 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.638 -13.327 -19.775 24.122 hybrid contribution 0.802 -0.278 -1.211 1.479 sum -2.835 -13.604 -20.986 25.170 Atomic orbital electron populations 1.70044 1.05256 1.25358 1.53938 1.25045 0.95254 0.98426 1.00964 0.86261 0.79455 0.84046 0.77252 1.20261 1.21565 1.21772 1.19235 0.92872 0.85025 1.40931 0.91733 1.43987 1.37828 1.01571 1.47814 1.20860 0.97443 0.86903 0.92526 1.21696 0.95873 0.99340 0.96830 1.21987 0.98264 0.91134 0.98321 1.23559 0.95948 1.02983 0.99464 1.21919 1.01186 1.02735 0.77817 0.84829 1.45237 1.51433 1.29346 1.07638 1.16765 0.80054 0.82495 0.82579 1.90814 1.37550 1.29406 1.83610 1.23732 1.10617 1.03805 0.97479 1.19206 0.99360 1.00439 0.87728 1.17982 1.06349 0.98777 0.86001 1.41896 1.42954 1.25589 1.05428 0.74277 1.21883 0.96343 0.91075 0.98287 1.20165 1.07657 1.03103 0.89154 1.23228 1.07284 1.01332 0.99028 1.83925 1.49045 1.26342 0.97256 1.21829 0.99165 0.93598 0.99951 1.20750 0.88866 0.98630 0.86992 0.93719 0.96224 0.92648 0.92798 0.91766 0.88817 0.88283 0.76351 0.83314 0.80447 0.83418 0.91925 0.93836 0.96352 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.23 55.49 0.62 -25.27 16 2 C 0.00 0.04 4.88 -17.43 -0.09 -0.04 16 3 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.83 9.54 -15.06 -0.14 -6.98 16 8 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.59 2.94 -172.25 -0.51 -15.09 16 10 C 0.15 3.10 6.52 -3.67 -0.02 3.08 16 11 C -0.10 -1.70 5.83 -26.46 -0.15 -1.86 16 12 C -0.10 -1.60 1.94 -154.45 -0.30 -1.90 16 13 C -0.18 -2.67 9.87 -26.75 -0.26 -2.93 16 14 C 0.07 1.04 6.14 -68.01 -0.42 0.62 16 15 H 0.13 2.09 7.40 -51.93 -0.38 1.71 16 16 N -0.69 -9.85 5.34 -55.27 -0.30 -10.15 16 17 C 0.59 8.94 7.77 -12.97 -0.10 8.84 16 18 O -0.53 -9.47 16.34 5.16 0.08 -9.38 16 19 C -0.24 -3.03 6.38 -37.18 -0.24 -3.27 16 20 C -0.03 -0.36 9.88 -40.23 -0.40 -0.76 16 21 C 0.02 0.23 7.67 -84.02 -0.64 -0.41 16 22 N -0.56 -3.78 6.21 -10.90 -0.07 -3.85 16 23 H 0.42 1.52 8.96 -40.82 -0.37 1.15 16 24 C 0.06 0.34 11.85 -16.92 -0.20 0.14 16 25 C -0.17 -1.42 10.85 -39.60 -0.43 -1.85 16 26 C -0.19 -2.02 7.31 -38.28 -0.28 -2.30 16 27 S 0.17 1.92 22.29 -107.50 -2.40 -0.47 16 28 C -0.11 -1.97 5.37 -26.46 -0.14 -2.11 16 29 C 0.17 4.04 5.40 -3.67 -0.02 4.02 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 33 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.40 5.28 6.17 -40.82 -0.25 5.02 16 38 H 0.15 1.57 8.00 -52.48 -0.42 1.15 16 39 H 0.18 0.33 8.06 -52.48 -0.42 -0.09 16 40 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.04 0.70 6.75 -51.93 -0.35 0.35 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 2.36 5.93 -51.93 -0.31 2.06 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.00 372.87 -11.65 -44.66 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.84 Total: 5.08 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.84 Total: -7.70 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.25 Total: -54.36 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.40 Total: -0.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.00 -11.65 -44.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016947210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.211 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds