Wall clock time and date at job start Wed Apr 1 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48495 * 109.46870 * 270.00215 * 3 2 1 5 5 H 1.48496 * 109.46975 * 30.00663 * 3 2 1 6 6 H 1.48504 * 109.46941 * 150.00413 * 3 2 1 7 7 C 1.38808 * 119.99468 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00636 * 342.46956 * 7 2 1 9 9 N 1.36943 * 119.99857 * 162.46796 * 7 2 1 10 10 C 1.46917 * 120.63096 * 328.86364 * 9 7 2 11 11 C 1.53195 * 108.77607 * 233.58464 * 10 9 7 12 12 C 1.53040 * 109.31181 * 305.36311 * 11 10 9 13 13 C 1.53038 * 109.53774 * 61.36483 * 12 11 10 14 14 C 1.46926 * 120.62874 * 148.83790 * 9 7 2 15 15 H 1.09001 * 109.70092 * 246.27201 * 14 9 7 16 16 C 1.52999 * 109.58772 * 6.62775 * 14 9 7 17 17 N 1.46492 * 109.47215 * 299.34006 * 16 14 9 18 18 C 1.34781 * 120.00217 * 179.97438 * 17 16 14 19 19 O 1.21592 * 119.99808 * 0.02562 * 18 17 16 20 20 C 1.47554 * 120.00117 * 180.02562 * 18 17 16 21 21 C 1.40122 * 120.59379 * 359.97438 * 20 18 17 22 22 N 1.30607 * 121.17691 * 180.02562 * 21 20 18 23 23 C 1.34909 * 122.44843 * 0.02562 * 22 21 20 24 24 C 1.40614 * 128.46262 * 179.69923 * 23 22 21 25 25 C 1.32288 * 115.91025 * 179.79215 * 24 23 22 26 26 S 1.75510 * 110.83274 * 0.47740 * 25 24 23 27 27 C 1.40092 * 119.26873 * 359.97438 * 23 22 21 28 28 C 1.39369 * 119.75614 * 0.02562 * 27 23 22 29 29 H 0.97001 * 119.99379 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.59192 * 113.79825 * 10 9 7 31 31 H 1.09000 * 109.70354 * 353.44094 * 10 9 7 32 32 H 1.09003 * 109.49586 * 185.41573 * 11 10 9 33 33 H 1.08998 * 109.49591 * 65.31350 * 11 10 9 34 34 H 1.09008 * 109.46067 * 301.34348 * 12 11 10 35 35 H 1.08995 * 109.44862 * 181.38093 * 12 11 10 36 36 H 1.08999 * 109.49911 * 178.68657 * 13 12 11 37 37 H 1.09001 * 109.52591 * 58.60116 * 13 12 11 38 38 H 1.09003 * 109.46721 * 179.34597 * 16 14 9 39 39 H 1.08996 * 109.46801 * 59.34640 * 16 14 9 40 40 H 0.97008 * 120.00398 * 0.02562 * 17 16 14 41 41 H 1.08001 * 119.40933 * 0.02760 * 21 20 18 42 42 H 1.07996 * 122.04854 * 0.28216 * 24 23 22 43 43 H 1.08002 * 124.58490 * 180.20702 * 25 24 23 44 44 H 1.08001 * 120.73604 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.5078 -2.1159 0.2807 9 7 3.3319 -1.2297 -0.3578 10 6 3.8621 -0.2733 -1.3389 11 6 4.5733 -1.0508 -2.4509 12 6 5.6310 -1.9669 -1.8311 13 6 4.9537 -2.9716 -0.8963 14 6 4.2467 -2.2158 0.2332 15 1 4.9864 -1.7067 0.8511 16 6 3.4525 -3.2021 1.0919 17 7 2.7768 -2.4767 2.1703 18 6 2.0132 -3.1454 3.0571 19 8 1.8856 -4.3508 2.9623 20 6 1.3321 -2.4146 4.1430 21 6 1.4708 -1.0255 4.2643 22 7 0.8735 -0.3673 5.2213 23 6 0.0961 -0.9745 6.1415 24 6 -0.5966 -0.3964 7.2200 25 6 -1.2950 -1.2308 7.9724 26 16 -1.1359 -2.8788 7.3901 27 6 -0.0846 -2.3623 6.0773 28 6 0.5386 -3.0950 5.0687 29 1 -0.4849 0.8401 0.0004 30 1 4.5704 0.3963 -0.8508 31 1 3.0442 0.3077 -1.7650 32 1 5.0538 -0.3507 -3.1344 33 1 3.8462 -1.6520 -2.9968 34 1 6.3439 -1.3674 -1.2648 35 1 6.1552 -2.5031 -2.6221 36 1 5.7048 -3.6386 -0.4733 37 1 4.2230 -3.5551 -1.4565 38 1 4.1315 -3.9396 1.5200 39 1 2.7108 -3.7071 0.4731 40 1 2.8782 -1.5149 2.2458 41 1 2.0826 -0.4896 3.5537 42 1 -0.5671 0.6650 7.4172 43 1 -1.8801 -0.9381 8.8317 44 1 0.4105 -4.1655 5.0046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024593778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:31 Heat of formation + Delta-G solvation = 49.118274 kcal Electronic energy + Delta-G solvation = -28120.581086 eV Core-core repulsion = 24358.095489 eV Total energy + Delta-G solvation = -3762.485597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.54785 -39.10881 -37.95464 -35.63640 -34.41771 -33.09313 -32.40324 -31.26905 -30.75754 -29.67009 -26.35875 -25.17998 -24.37717 -23.43692 -22.71256 -21.63573 -20.83744 -20.13995 -19.46163 -18.30043 -17.08070 -16.71884 -16.29585 -16.05443 -15.69178 -15.17032 -15.03695 -14.63466 -14.16607 -13.88467 -13.87431 -13.74320 -13.68262 -13.26042 -13.08982 -12.76276 -12.66577 -12.48337 -12.16314 -12.10207 -11.69757 -11.65497 -11.35027 -11.21506 -10.86231 -10.68966 -10.48625 -10.40825 -10.23932 -9.99506 -9.86873 -9.58632 -9.49948 -9.22864 -8.80813 -8.71115 -8.33290 -8.07378 -6.99048 -6.01860 -3.43966 0.21169 1.10996 1.28769 1.74011 1.91592 3.23159 3.26114 3.40434 3.44629 3.63231 4.00486 4.08150 4.44026 4.60671 4.75166 4.88122 4.94759 5.02422 5.18826 5.22420 5.28955 5.38144 5.46922 5.49386 5.61053 5.71852 5.77419 5.82683 5.92037 5.97294 6.06910 6.10447 6.17233 6.18519 6.35509 6.38362 6.44265 6.48709 6.53703 6.66973 6.71346 6.93280 7.02416 7.84830 7.89287 8.07886 8.29131 8.68263 8.85291 9.62671 10.01538 11.12253 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015685 B = 0.003390 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.690696 B = 8256.598053 C = 9445.727335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.031 3.969 3 Si 0.876 3.124 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.269 4.269 8 H 0.093 0.907 9 N -0.604 5.604 10 C 0.126 3.874 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.128 4.128 14 C 0.163 3.837 15 H 0.038 0.962 16 C 0.135 3.865 17 N -0.683 5.683 18 C 0.562 3.438 19 O -0.555 6.555 20 C -0.160 4.160 21 C 0.171 3.829 22 N -0.460 5.460 23 C 0.139 3.861 24 C -0.114 4.114 25 C -0.172 4.172 26 S 0.109 5.891 27 C -0.208 4.208 28 C 0.023 3.977 29 H 0.263 0.737 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.410 0.590 41 H 0.169 0.831 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -3.088 10.974 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.169 4.169 3 Si 0.706 3.294 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.397 4.397 8 H 0.110 0.890 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.175 4.175 12 C -0.146 4.146 13 C -0.168 4.168 14 C 0.056 3.944 15 H 0.055 0.945 16 C 0.011 3.989 17 N -0.333 5.333 18 C 0.348 3.652 19 O -0.436 6.436 20 C -0.169 4.169 21 C -0.001 4.001 22 N -0.168 5.168 23 C 0.005 3.995 24 C -0.145 4.145 25 C -0.308 4.308 26 S 0.372 5.628 27 C -0.325 4.325 28 C -0.008 4.008 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.248 0.752 41 H 0.186 0.814 42 H 0.171 0.829 43 H 0.193 0.807 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.312 -4.276 11.554 12.758 hybrid contribution 0.751 2.102 -0.784 2.366 sum 4.063 -2.175 10.771 11.715 Atomic orbital electron populations 1.69811 1.05702 1.26613 1.51960 1.25345 0.95096 0.97357 0.99117 0.87075 0.79796 0.85056 0.77445 1.21524 1.23090 1.19477 1.18980 0.83570 0.94593 1.42538 0.88964 1.44403 1.06618 1.36735 1.45201 1.21368 0.96891 0.92029 0.89668 1.22009 0.98087 0.98846 0.98584 1.21366 0.97507 0.97478 0.98240 1.21933 0.99293 0.97786 0.97795 1.20758 0.91472 0.89991 0.92170 0.94469 1.21328 0.95686 0.93897 0.87962 1.45836 1.47804 1.12143 1.27561 1.17682 0.79278 0.86707 0.81568 1.90732 1.63630 1.13996 1.75231 1.20973 1.02121 0.95473 0.98306 1.22963 0.93793 0.90271 0.93078 1.67604 1.07353 1.39209 1.02660 1.19265 0.96319 0.88732 0.95137 1.19657 0.98571 1.01945 0.94304 1.25347 1.04720 0.96085 1.04690 1.84183 1.48360 1.07227 1.23058 1.23481 1.07165 0.98422 1.03466 1.20930 0.90213 1.00545 0.89080 0.92653 0.95821 0.90993 0.93077 0.91799 0.92738 0.93051 0.92505 0.91560 0.92049 0.90853 0.75171 0.81410 0.82937 0.80692 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 13.97 55.49 0.78 -25.19 16 2 C 0.03 0.82 5.26 -17.43 -0.09 0.73 16 3 Si 0.88 20.75 24.34 -169.99 -4.14 16.61 16 4 H -0.29 -6.76 6.56 56.52 0.37 -6.39 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.11 6.72 56.52 0.38 -5.73 16 7 C -0.27 -6.62 7.45 -15.06 -0.11 -6.73 16 8 H 0.09 2.51 6.05 -52.49 -0.32 2.20 16 9 N -0.60 -12.67 2.72 -164.78 -0.45 -13.12 16 10 C 0.13 2.52 4.19 -3.71 -0.02 2.50 16 11 C -0.14 -2.25 6.08 -26.61 -0.16 -2.41 16 12 C -0.11 -1.55 5.88 -26.69 -0.16 -1.71 16 13 C -0.13 -1.92 5.37 -26.61 -0.14 -2.06 16 14 C 0.16 2.82 3.01 -67.60 -0.20 2.62 16 15 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 16 C 0.14 2.38 4.43 -4.05 -0.02 2.36 16 17 N -0.68 -12.58 3.82 -61.35 -0.23 -12.81 16 18 C 0.56 10.72 7.77 -12.46 -0.10 10.62 16 19 O -0.56 -11.76 16.41 5.28 0.09 -11.67 16 20 C -0.16 -2.81 5.89 -104.87 -0.62 -3.43 16 21 C 0.17 2.97 10.69 -17.37 -0.19 2.78 16 22 N -0.46 -8.03 10.39 -11.01 -0.11 -8.15 16 23 C 0.14 2.17 6.97 -84.92 -0.59 1.58 16 24 C -0.11 -1.38 10.16 -40.61 -0.41 -1.79 16 25 C -0.17 -1.67 11.08 28.81 0.32 -1.35 16 26 S 0.11 1.21 23.29 -107.50 -2.50 -1.29 16 27 C -0.21 -3.08 6.49 -38.47 -0.25 -3.33 16 28 C 0.02 0.36 9.73 -38.64 -0.38 -0.01 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.47 7.03 -51.93 -0.37 0.11 16 31 H 0.07 1.61 4.72 -51.93 -0.25 1.37 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.47 7.39 -51.93 -0.38 1.08 16 40 H 0.41 7.56 5.48 -40.82 -0.22 7.34 16 41 H 0.17 2.81 6.41 -52.49 -0.34 2.47 16 42 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.15 2.23 7.72 -52.49 -0.41 1.83 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -30.61 360.13 -9.95 -40.57 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.69 Total: 9.25 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -3.11 Total: 0.38 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.02 Total: -59.27 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.14 Total: 16.61 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.50 Total: -1.29 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.61 -9.95 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024593778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.686 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds