Wall clock time and date at job start Wed Apr 1 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99460 * 2 1 4 4 H 1.48501 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47283 * 299.99747 * 3 2 1 6 6 H 1.48495 * 109.47453 * 60.00234 * 3 2 1 7 7 C 1.38801 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00142 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00138 * 359.72255 * 7 2 1 10 10 C 1.46500 * 120.00607 * 180.27529 * 9 7 2 11 11 H 1.09010 * 110.47393 * 32.33454 * 10 9 7 12 12 C 1.55054 * 110.53572 * 269.52034 * 10 9 7 13 13 C 1.54206 * 102.50601 * 201.94685 * 12 10 9 14 14 C 1.54320 * 104.34303 * 38.99574 * 13 12 10 15 15 H 1.08994 * 111.68946 * 98.36411 * 14 13 12 16 16 C 1.53781 * 109.79053 * 222.84979 * 14 13 12 17 17 N 1.47211 * 106.38021 * 132.76099 * 16 14 13 18 18 C 1.34775 * 126.70279 * 148.69270 * 17 16 14 19 19 O 1.21734 * 120.00035 * 179.60925 * 18 17 16 20 20 C 1.46491 * 120.00169 * 359.61483 * 18 17 16 21 21 C 1.36118 * 125.71320 * 189.47123 * 20 18 17 22 22 C 1.42227 * 107.62499 * 180.02562 * 21 20 18 23 23 C 1.45595 * 140.77562 * 180.02562 * 22 21 20 24 24 C 1.31811 * 114.62824 * 179.97438 * 23 22 21 25 25 S 1.75351 * 111.24619 * 0.02562 * 24 23 22 26 26 C 1.38173 * 106.99460 * 359.97438 * 22 21 20 27 27 N 1.37459 * 108.16947 * 359.74249 * 26 22 21 28 28 H 0.97001 * 125.68379 * 180.29032 * 27 26 22 29 29 C 1.47212 * 106.59716 * 328.71823 * 17 16 14 30 30 C 1.53783 * 106.37925 * 31.27960 * 29 17 16 31 31 H 1.09000 * 112.38560 * 103.15711 * 30 29 17 32 32 H 0.97000 * 120.00405 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99953 * 0.27152 * 9 7 2 34 34 H 1.08997 * 110.90065 * 319.52490 * 12 10 9 35 35 H 1.08999 * 110.90981 * 83.12253 * 12 10 9 36 36 H 1.09003 * 109.35183 * 280.73033 * 13 12 10 37 37 H 1.08996 * 111.44046 * 158.29942 * 13 12 10 38 38 H 1.09001 * 110.07089 * 251.98432 * 16 14 13 39 39 H 1.08995 * 110.07854 * 13.52992 * 16 14 13 40 40 H 1.07994 * 126.18191 * 0.02562 * 21 20 18 41 41 H 1.07998 * 122.68734 * 359.97043 * 23 22 21 42 42 H 1.07998 * 124.37442 * 180.02562 * 24 23 22 43 43 H 1.09001 * 110.07110 * 272.05665 * 29 17 16 44 44 H 1.08997 * 110.07941 * 150.51294 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3879 0.0047 10 6 2.0582 -3.6567 0.0102 11 1 2.9962 -3.5531 0.5559 12 6 2.3196 -4.1401 -1.4397 13 6 2.5460 -5.6538 -1.2512 14 6 1.5181 -6.0631 -0.1754 15 1 0.6230 -6.4992 -0.6187 16 6 2.1749 -7.0174 0.8360 17 7 1.8105 -6.5203 2.1729 18 6 1.6295 -7.2593 3.2853 19 8 1.3349 -6.7174 4.3348 20 6 1.7875 -8.7147 3.2316 21 6 1.4598 -9.5867 4.2241 22 6 1.7712 -10.8968 3.7665 23 6 1.7212 -12.2852 4.2020 24 6 2.1673 -13.1547 3.3175 25 16 2.6982 -12.3536 1.8508 26 6 2.2849 -10.7674 2.4903 27 7 2.2881 -9.4324 2.1629 28 1 2.5934 -9.0567 1.3223 29 6 1.6819 -5.0584 2.0573 30 6 1.1947 -4.7777 0.6259 31 1 0.1328 -4.5346 0.5890 32 1 -0.4851 0.8400 0.0004 33 1 0.3557 -2.3880 0.0048 34 1 1.4481 -3.9660 -2.0707 35 1 3.2032 -3.6576 -1.8573 36 1 3.5617 -5.8255 -0.8946 37 1 2.3692 -6.2014 -2.1769 38 1 1.7946 -8.0294 0.6967 39 1 3.2579 -7.0040 0.7142 40 1 1.0393 -9.3300 5.1851 41 1 1.3486 -12.5791 5.1721 42 1 2.2013 -14.2225 3.4756 43 1 2.6489 -4.5835 2.2231 44 1 0.9542 -4.6885 2.7795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026324185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:36 Heat of formation + Delta-G solvation = 44.565630 kcal Electronic energy + Delta-G solvation = -27269.183576 eV Core-core repulsion = 23506.500562 eV Total energy + Delta-G solvation = -3762.683014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.61440 -41.23301 -39.59578 -36.91916 -36.27012 -35.11634 -32.80757 -31.69333 -31.41309 -29.99709 -29.25494 -26.83172 -25.58957 -24.73414 -23.90446 -22.88978 -21.62242 -21.26209 -20.65295 -20.30967 -19.41563 -19.03354 -18.00162 -17.31320 -16.85260 -16.80210 -16.15279 -15.99799 -15.80298 -15.50216 -15.38001 -15.23044 -14.87708 -14.73328 -14.38934 -13.99434 -13.91082 -13.67170 -13.35455 -13.22874 -12.97972 -12.81107 -12.63548 -12.61436 -12.41369 -12.13502 -12.07598 -11.75665 -11.72986 -11.65005 -11.51788 -11.46578 -11.32630 -10.89651 -10.60083 -9.98958 -9.30371 -8.98191 -8.64964 -7.94935 -5.22539 0.07378 0.13913 0.42042 1.07221 1.45993 1.46901 1.56207 1.61652 1.75643 2.09229 2.24381 2.55311 3.15323 3.28845 3.38575 3.60972 3.65020 3.76328 3.95418 3.99373 4.01493 4.18755 4.33523 4.36985 4.40845 4.53013 4.59064 4.60746 4.62651 4.75664 4.76988 4.78342 4.96032 4.97819 5.04902 5.16314 5.20561 5.24855 5.35262 5.41862 5.43607 5.49725 5.59902 5.62377 6.08312 6.26862 6.27729 6.81220 7.33622 8.10760 8.31886 9.28763 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025492 B = 0.002214 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.114206 B =12645.558722 C =13415.164582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.055 0.945 12 C -0.138 4.138 13 C -0.101 4.101 14 C -0.087 4.087 15 H 0.103 0.897 16 C 0.092 3.908 17 N -0.612 5.612 18 C 0.599 3.401 19 O -0.569 6.569 20 C -0.016 4.016 21 C -0.080 4.080 22 C -0.182 4.182 23 C -0.088 4.088 24 C -0.211 4.211 25 S 0.164 5.836 26 C -0.023 4.023 27 N -0.520 5.520 28 H 0.432 0.568 29 C 0.121 3.879 30 C -0.101 4.101 31 H 0.074 0.926 32 H 0.249 0.751 33 H 0.372 0.628 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.202 0.798 43 H 0.072 0.928 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 -31.300 0.537 32.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.373 5.373 10 C 0.066 3.934 11 H 0.072 0.928 12 C -0.179 4.179 13 C -0.139 4.139 14 C -0.107 4.107 15 H 0.121 0.879 16 C -0.030 4.030 17 N -0.344 5.344 18 C 0.390 3.610 19 O -0.449 6.449 20 C -0.129 4.129 21 C -0.109 4.109 22 C -0.194 4.194 23 C -0.117 4.117 24 C -0.345 4.345 25 S 0.417 5.583 26 C -0.252 4.252 27 N -0.131 5.131 28 H 0.279 0.721 29 C -0.001 4.001 30 C -0.121 4.121 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.204 0.796 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.172 0.828 41 H 0.180 0.820 42 H 0.219 0.781 43 H 0.090 0.910 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.833 -31.317 -0.271 32.283 hybrid contribution -0.889 2.475 1.188 2.886 sum 6.944 -28.842 0.917 29.680 Atomic orbital electron populations 1.69817 1.06575 1.25810 1.59924 1.25521 0.96324 1.01010 1.04186 0.85142 0.78373 0.80226 0.76464 1.18919 1.22170 1.22505 1.19639 0.91392 0.85201 1.40270 0.90554 1.42647 1.05342 1.01016 1.88309 1.21514 0.93445 0.83868 0.94548 0.92753 1.22964 1.00695 0.96138 0.98087 1.22290 0.98439 0.94578 0.98600 1.22536 0.99955 0.93126 0.95046 0.87859 1.22812 1.01554 0.98352 0.80289 1.48554 1.68018 1.08309 1.09520 1.16906 0.76869 0.84753 0.82492 1.90861 1.50814 1.72615 1.30585 1.19608 1.12220 0.90233 0.90841 1.20899 1.01516 0.89613 0.98846 1.19719 1.10212 0.94640 0.94842 1.20542 1.01257 0.88222 1.01725 1.25330 1.08084 1.04734 0.96329 1.83900 1.68707 0.88082 1.17601 1.24118 1.09769 0.90962 1.00376 1.42211 1.52455 1.02897 1.15577 0.72069 1.22038 1.01189 0.79463 0.97457 1.22751 1.00097 0.96163 0.93117 0.90765 0.94193 0.79647 0.93198 0.92438 0.89837 0.88950 0.89044 0.88007 0.82804 0.81968 0.78068 0.90995 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 3 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 7 C -0.23 -12.66 9.96 84.03 0.84 -11.82 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.73 -35.76 5.21 -317.50 -1.65 -37.41 16 10 C 0.18 6.31 3.05 46.14 0.14 6.45 16 11 H 0.05 2.01 7.13 -2.38 -0.02 1.99 16 12 C -0.14 -4.14 6.56 31.71 0.21 -3.93 16 13 C -0.10 -1.90 6.33 31.45 0.20 -1.70 16 14 C -0.09 -1.76 3.88 -9.44 -0.04 -1.80 16 15 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 16 C 0.09 1.59 5.29 86.51 0.46 2.05 16 17 N -0.61 -16.14 3.32 -820.05 -2.72 -18.86 16 18 C 0.60 18.09 7.83 86.39 0.68 18.76 16 19 O -0.57 -21.91 17.10 -4.46 -0.08 -21.98 16 20 C -0.02 -0.39 6.77 39.81 0.27 -0.12 16 21 C -0.08 -1.93 10.60 22.77 0.24 -1.69 16 22 C -0.18 -3.67 6.80 -20.41 -0.14 -3.81 16 23 C -0.09 -1.23 10.42 23.39 0.24 -0.98 16 24 C -0.21 -2.15 11.03 67.04 0.74 -1.41 16 25 S 0.16 1.93 23.24 -56.49 -1.31 0.62 16 26 C -0.02 -0.42 8.41 83.80 0.70 0.28 16 27 N -0.52 -9.52 5.44 -179.04 -0.97 -10.50 16 28 H 0.43 5.62 5.27 -92.71 -0.49 5.13 16 29 C 0.12 3.80 6.54 86.51 0.57 4.37 16 30 C -0.10 -3.04 3.60 -9.44 -0.03 -3.08 16 31 H 0.07 2.54 7.81 -2.39 -0.02 2.52 16 32 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.37 19.76 7.61 -92.70 -0.71 19.05 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.30 7.25 -2.39 -0.02 1.28 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.19 5.16 -2.39 -0.01 1.18 16 39 H 0.10 1.34 7.19 -2.39 -0.02 1.32 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.07 2.31 7.13 -2.39 -0.02 2.29 16 44 H 0.06 2.05 7.92 -2.39 -0.02 2.03 16 Total: -1.00 -73.44 366.16 0.98 -72.46 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.13 Total: 29.09 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.54 Total: -2.45 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -5.07 Total: -126.00 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.08 Total: -21.98 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.31 Total: 0.62 kcal Total: -73.44 0.98 -72.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026324185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.028 kcal (2) G-P(sol) polarization free energy of solvation -73.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds