Wall clock time and date at job start Wed Apr 1 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99966 * 2 1 4 4 H 1.48495 * 109.47358 * 240.00284 * 3 2 1 5 5 H 1.48494 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46810 * 120.00313 * 3 2 1 7 7 C 1.38813 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99935 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99764 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.44656 * 32.43534 * 10 9 7 12 12 C 1.55947 * 110.49424 * 269.72922 * 10 9 7 13 13 C 1.56398 * 105.79077 * 233.79310 * 12 10 9 14 14 C 1.50997 * 101.59698 * 334.98185 * 13 12 10 15 15 H 1.08998 * 110.06136 * 290.63309 * 14 13 12 16 16 C 1.50284 * 125.69077 * 156.23443 * 14 13 12 17 17 N 1.49212 * 104.90123 * 215.88175 * 16 14 13 18 18 C 1.34775 * 126.05776 * 186.91829 * 17 16 14 19 19 O 1.21736 * 119.99661 * 179.69246 * 18 17 16 20 20 C 1.46451 * 119.99915 * 359.69778 * 18 17 16 21 21 C 1.37466 * 125.80394 * 180.02562 * 20 18 17 22 22 C 1.40655 * 107.55528 * 179.97438 * 21 20 18 23 23 S 1.76025 * 142.39607 * 179.97438 * 22 21 20 24 24 C 1.75595 * 91.30933 * 180.02562 * 23 22 21 25 25 C 1.32769 * 110.47677 * 0.26853 * 24 23 22 26 26 C 1.38246 * 108.03328 * 0.02562 * 22 21 20 27 27 N 1.37914 * 125.80907 * 359.97353 * 20 18 17 28 28 H 0.96999 * 125.67930 * 0.09319 * 27 20 18 29 29 C 1.49705 * 107.88436 * 6.65994 * 17 16 14 30 30 C 1.50290 * 110.49555 * 154.99816 * 10 9 7 31 31 H 1.08999 * 109.99028 * 39.09241 * 30 10 9 32 32 H 0.96997 * 119.99555 * 359.97438 * 1 2 3 33 33 H 0.96992 * 119.99974 * 359.97438 * 9 7 2 34 34 H 1.09003 * 110.18247 * 352.87683 * 12 10 9 35 35 H 1.09003 * 110.18347 * 114.63255 * 12 10 9 36 36 H 1.08998 * 110.99859 * 93.06408 * 13 12 10 37 37 H 1.09003 * 111.00152 * 216.90813 * 13 12 10 38 38 H 1.09002 * 110.45916 * 96.96346 * 16 14 13 39 39 H 1.09000 * 110.22341 * 334.68375 * 16 14 13 40 40 H 1.08005 * 126.21994 * 359.94257 * 21 20 18 41 41 H 1.08002 * 124.75835 * 179.97438 * 24 23 22 42 42 H 1.07994 * 122.16458 * 179.73756 * 25 24 23 43 43 H 1.08998 * 110.85056 * 143.59159 * 29 17 16 44 44 H 1.08996 * 110.84790 * 267.21230 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9949 -3.5555 0.5472 12 6 2.3251 -4.1331 -1.4613 13 6 1.7639 -5.5906 -1.5430 14 6 1.8377 -6.0256 -0.0989 15 1 2.8782 -6.1446 0.2031 16 6 1.0050 -7.1039 0.5356 17 7 0.7402 -6.6187 1.9215 18 6 0.1395 -7.3171 2.9053 19 8 -0.0161 -6.8126 4.0022 20 6 -0.3259 -8.6829 2.6547 21 6 -0.9511 -9.4996 3.5668 22 6 -1.2300 -10.7188 2.9233 23 16 -1.9512 -12.3026 3.1884 24 6 -1.6037 -12.7821 1.5353 25 6 -0.9913 -11.7994 0.8856 26 6 -0.7698 -10.6314 1.6226 27 7 -0.2123 -9.3682 1.4633 28 1 0.1909 -9.0262 0.6501 29 6 1.2656 -5.2209 2.0275 30 6 1.2162 -4.7504 0.5945 31 1 0.1803 -4.6393 0.2742 32 1 -0.4849 0.8401 0.0004 33 1 0.3556 -2.3881 0.0002 34 1 1.8026 -3.4887 -2.1684 35 1 3.3952 -4.1285 -1.6687 36 1 0.7340 -5.5933 -1.8997 37 1 2.3954 -6.2176 -2.1725 38 1 1.5554 -8.0445 0.5617 39 1 0.0687 -7.2264 -0.0089 40 1 -1.1850 -9.2505 4.5913 41 1 -1.8491 -13.7433 1.1085 42 1 -0.6868 -11.8945 -0.1461 43 1 0.6196 -4.6105 2.6585 44 1 2.2894 -5.2186 2.4014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026394250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:37 Heat of formation + Delta-G solvation = 77.159120 kcal Electronic energy + Delta-G solvation = -27263.766384 eV Core-core repulsion = 23502.496729 eV Total energy + Delta-G solvation = -3761.269655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71759 -40.42198 -38.53698 -35.69090 -35.40286 -33.49882 -31.39585 -30.98843 -30.07946 -28.73592 -28.10395 -25.60924 -24.26627 -23.27393 -23.05149 -21.72079 -21.02788 -20.29993 -19.48192 -19.21153 -18.19267 -17.18621 -16.68160 -16.47171 -15.71328 -15.66989 -15.07836 -14.86474 -14.68803 -14.44320 -14.18099 -14.03892 -13.74979 -13.59126 -13.26451 -12.99528 -12.82642 -12.37528 -12.15532 -12.08858 -11.85331 -11.67172 -11.54412 -11.21624 -11.11296 -10.86644 -10.81606 -10.60470 -10.25818 -10.22535 -10.17762 -10.01077 -9.87339 -9.65778 -8.97444 -8.88494 -8.35018 -7.94155 -7.03435 -5.81788 -3.11616 0.48697 1.25953 1.70628 1.79224 2.46597 2.47142 2.78286 3.17647 3.40997 3.45847 3.46768 3.90814 4.31387 4.44179 4.52124 4.63307 4.68520 4.86942 4.98229 5.04646 5.06605 5.18954 5.24391 5.43900 5.45674 5.48822 5.55241 5.62538 5.69904 5.71985 5.81038 5.81434 5.89213 6.01770 6.03718 6.18787 6.20295 6.23655 6.37532 6.42119 6.51051 6.68954 6.95958 6.99657 7.28666 7.65128 7.94469 8.36082 9.47489 10.03072 10.37329 11.40400 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.002172 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.794480 B =12888.475679 C =13554.542816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.719 5.719 10 C 0.197 3.803 11 H 0.058 0.942 12 C -0.143 4.143 13 C -0.097 4.097 14 C -0.130 4.130 15 H 0.085 0.915 16 C 0.108 3.892 17 N -0.623 5.623 18 C 0.600 3.400 19 O -0.521 6.521 20 C 0.017 3.983 21 C -0.074 4.074 22 C -0.218 4.218 23 S 0.129 5.871 24 C -0.190 4.190 25 C -0.114 4.114 26 C 0.060 3.940 27 N -0.544 5.544 28 H 0.420 0.580 29 C 0.131 3.869 30 C -0.116 4.116 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.385 0.615 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.141 0.859 43 H 0.089 0.911 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -27.021 -0.371 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.085 3.915 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.135 4.135 14 C -0.149 4.149 15 H 0.103 0.897 16 C -0.015 4.015 17 N -0.357 5.357 18 C 0.388 3.612 19 O -0.397 6.397 20 C -0.098 4.098 21 C -0.105 4.105 22 C -0.338 4.338 23 S 0.388 5.612 24 C -0.326 4.326 25 C -0.147 4.147 26 C -0.059 4.059 27 N -0.152 5.152 28 H 0.264 0.736 29 C 0.011 3.989 30 C -0.136 4.136 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.219 0.781 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.175 0.825 41 H 0.190 0.810 42 H 0.159 0.841 43 H 0.107 0.893 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.107 -27.220 1.382 27.277 hybrid contribution 1.003 1.677 -1.816 2.668 sum -0.104 -25.543 -0.434 25.547 Atomic orbital electron populations 1.69650 1.05132 1.25907 1.57231 1.24759 0.95505 0.97767 1.02729 0.86274 0.78543 0.83528 0.77853 1.21263 1.21704 1.21206 1.19187 0.90967 0.84051 1.43265 0.91157 1.42474 1.05691 0.99614 1.88144 1.20080 0.94184 0.84999 0.92210 0.92403 1.23819 1.00084 0.93701 1.00840 1.21758 1.01356 0.97479 0.92952 1.22148 0.99905 0.94779 0.98107 0.89665 1.21443 0.99627 0.97361 0.83040 1.49792 1.58612 1.16305 1.11036 1.16570 0.77824 0.83036 0.83727 1.90898 1.56904 1.69261 1.22629 1.20323 1.09164 0.93959 0.86378 1.20408 1.01048 0.89620 0.99393 1.22697 1.12481 1.00655 0.97990 1.83931 1.62221 1.04862 1.10172 1.25232 1.06120 1.03312 0.97900 1.18899 1.04223 0.90569 1.01031 1.18419 1.04212 0.88285 0.94988 1.42711 1.49213 1.10731 1.12501 0.73567 1.21571 0.99702 0.79939 0.97683 1.22561 1.01859 0.95576 0.93629 0.89913 0.93378 0.78132 0.90618 0.92520 0.91530 0.92035 0.91340 0.91016 0.82525 0.81033 0.84145 0.89290 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -16.95 5.10 -53.21 -0.27 -17.22 16 10 C 0.20 3.51 3.41 -67.71 -0.23 3.28 16 11 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 12 C -0.14 -2.20 6.74 -23.33 -0.16 -2.35 16 13 C -0.10 -1.11 6.72 -25.91 -0.17 -1.29 16 14 C -0.13 -1.45 2.76 -90.30 -0.25 -1.70 16 15 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 16 C 0.11 1.08 4.96 -3.89 -0.02 1.06 16 17 N -0.62 -8.30 3.42 -173.21 -0.59 -8.89 16 18 C 0.60 8.95 7.84 -12.95 -0.10 8.85 16 19 O -0.52 -9.54 17.19 5.16 0.09 -9.46 16 20 C 0.02 0.21 6.87 -82.10 -0.56 -0.35 16 21 C -0.07 -0.93 10.60 -38.95 -0.41 -1.34 16 22 C -0.22 -2.47 7.26 -38.67 -0.28 -2.75 16 23 S 0.13 1.11 23.31 -107.50 -2.51 -1.40 16 24 C -0.19 -1.32 11.13 28.86 0.32 -0.99 16 25 C -0.11 -0.89 10.16 -40.84 -0.42 -1.31 16 26 C 0.06 0.62 7.67 -84.00 -0.64 -0.03 16 27 N -0.54 -5.58 5.78 -7.34 -0.04 -5.63 16 28 H 0.42 3.37 4.89 -40.82 -0.20 3.17 16 29 C 0.13 1.95 6.81 -3.31 -0.02 1.93 16 30 C -0.12 -1.73 2.42 -90.34 -0.22 -1.95 16 31 H 0.08 1.35 7.93 -51.93 -0.41 0.94 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.38 9.78 7.68 -40.82 -0.31 9.47 16 34 H 0.08 1.35 7.98 -51.93 -0.41 0.93 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.54 6.74 -51.93 -0.35 0.19 16 39 H 0.07 0.65 7.63 -51.93 -0.40 0.25 16 40 H 0.16 1.85 8.06 -52.48 -0.42 1.42 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -31.96 369.60 -11.32 -43.28 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.85 Total: 9.63 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -3.41 Total: -5.98 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.18 Total: -58.59 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.96 -11.32 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026394250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.440 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds