Wall clock time and date at job start Wed Apr 1 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99966 * 2 1 4 4 H 1.48495 * 109.47358 * 240.00284 * 3 2 1 5 5 H 1.48494 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46810 * 120.00313 * 3 2 1 7 7 C 1.38813 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99935 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99764 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.44656 * 32.43534 * 10 9 7 12 12 C 1.55947 * 110.49424 * 269.72922 * 10 9 7 13 13 C 1.56398 * 105.79077 * 233.79310 * 12 10 9 14 14 C 1.50997 * 101.59698 * 334.98185 * 13 12 10 15 15 H 1.08998 * 110.06136 * 290.63309 * 14 13 12 16 16 C 1.50284 * 125.69077 * 156.23443 * 14 13 12 17 17 N 1.49212 * 104.90123 * 215.88175 * 16 14 13 18 18 C 1.34775 * 126.05776 * 186.91829 * 17 16 14 19 19 O 1.21736 * 119.99661 * 179.69246 * 18 17 16 20 20 C 1.46451 * 119.99915 * 359.69778 * 18 17 16 21 21 C 1.37466 * 125.80394 * 180.02562 * 20 18 17 22 22 C 1.40655 * 107.55528 * 179.97438 * 21 20 18 23 23 S 1.76025 * 142.39607 * 179.97438 * 22 21 20 24 24 C 1.75595 * 91.30933 * 180.02562 * 23 22 21 25 25 C 1.32769 * 110.47677 * 0.26853 * 24 23 22 26 26 C 1.38246 * 108.03328 * 0.02562 * 22 21 20 27 27 N 1.37914 * 125.80907 * 359.97353 * 20 18 17 28 28 H 0.96999 * 125.67930 * 0.09319 * 27 20 18 29 29 C 1.49705 * 107.88436 * 6.65994 * 17 16 14 30 30 C 1.50290 * 110.49555 * 154.99816 * 10 9 7 31 31 H 1.08999 * 109.99028 * 39.09241 * 30 10 9 32 32 H 0.96997 * 119.99555 * 359.97438 * 1 2 3 33 33 H 0.96992 * 119.99974 * 359.97438 * 9 7 2 34 34 H 1.09003 * 110.18247 * 352.87683 * 12 10 9 35 35 H 1.09003 * 110.18347 * 114.63255 * 12 10 9 36 36 H 1.08998 * 110.99859 * 93.06408 * 13 12 10 37 37 H 1.09003 * 111.00152 * 216.90813 * 13 12 10 38 38 H 1.09002 * 110.45916 * 96.96346 * 16 14 13 39 39 H 1.09000 * 110.22341 * 334.68375 * 16 14 13 40 40 H 1.08005 * 126.21994 * 359.94257 * 21 20 18 41 41 H 1.08002 * 124.75835 * 179.97438 * 24 23 22 42 42 H 1.07994 * 122.16458 * 179.73756 * 25 24 23 43 43 H 1.08998 * 110.85056 * 143.59159 * 29 17 16 44 44 H 1.08996 * 110.84790 * 267.21230 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9949 -3.5555 0.5472 12 6 2.3251 -4.1331 -1.4613 13 6 1.7639 -5.5906 -1.5430 14 6 1.8377 -6.0256 -0.0989 15 1 2.8782 -6.1446 0.2031 16 6 1.0050 -7.1039 0.5356 17 7 0.7402 -6.6187 1.9215 18 6 0.1395 -7.3171 2.9053 19 8 -0.0161 -6.8126 4.0022 20 6 -0.3259 -8.6829 2.6547 21 6 -0.9511 -9.4996 3.5668 22 6 -1.2300 -10.7188 2.9233 23 16 -1.9512 -12.3026 3.1884 24 6 -1.6037 -12.7821 1.5353 25 6 -0.9913 -11.7994 0.8856 26 6 -0.7698 -10.6314 1.6226 27 7 -0.2123 -9.3682 1.4633 28 1 0.1909 -9.0262 0.6501 29 6 1.2656 -5.2209 2.0275 30 6 1.2162 -4.7504 0.5945 31 1 0.1803 -4.6393 0.2742 32 1 -0.4849 0.8401 0.0004 33 1 0.3556 -2.3881 0.0002 34 1 1.8026 -3.4887 -2.1684 35 1 3.3952 -4.1285 -1.6687 36 1 0.7340 -5.5933 -1.8997 37 1 2.3954 -6.2176 -2.1725 38 1 1.5554 -8.0445 0.5617 39 1 0.0687 -7.2264 -0.0089 40 1 -1.1850 -9.2505 4.5913 41 1 -1.8491 -13.7433 1.1085 42 1 -0.6868 -11.8945 -0.1461 43 1 0.6196 -4.6105 2.6585 44 1 2.2894 -5.2186 2.4014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026394250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:36 Heat of formation + Delta-G solvation = 57.208197 kcal Electronic energy + Delta-G solvation = -27264.631521 eV Core-core repulsion = 23502.496729 eV Total energy + Delta-G solvation = -3762.134791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.60917 -41.48631 -39.71928 -36.95879 -36.24055 -35.14771 -32.72991 -32.23466 -31.20836 -30.04744 -28.98290 -27.09446 -25.26125 -24.89434 -23.97061 -22.72189 -21.90369 -21.43412 -20.46752 -20.30465 -19.26758 -18.97042 -17.75352 -17.52419 -16.76023 -16.60628 -16.40192 -16.04916 -15.76486 -15.53835 -15.41013 -15.07846 -14.93395 -14.68993 -14.43852 -14.28811 -13.90503 -13.60075 -13.22157 -13.21930 -13.04625 -12.84068 -12.62305 -12.56872 -12.50612 -12.31309 -12.18173 -11.83305 -11.74234 -11.67132 -11.42282 -11.34791 -11.05334 -10.90485 -10.79837 -10.00538 -9.12779 -8.99887 -8.65922 -7.94197 -5.22291 -0.28138 0.57886 0.80868 1.16459 1.45850 1.47419 1.49344 1.55072 1.77897 1.90290 2.11944 2.56111 2.83631 3.37106 3.39847 3.59494 3.75643 3.83885 3.98383 3.98474 4.04399 4.17460 4.25618 4.36204 4.42533 4.45658 4.49616 4.56700 4.64401 4.71143 4.75503 4.79885 4.85319 4.92580 5.00960 5.05552 5.08928 5.19668 5.33253 5.40142 5.47203 5.48995 5.55940 5.62507 6.19588 6.27900 6.30146 6.81547 7.33741 8.10607 8.31915 9.29090 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.002172 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.794480 B =12888.475679 C =13554.542816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.734 5.734 10 C 0.187 3.813 11 H 0.054 0.946 12 C -0.137 4.137 13 C -0.083 4.083 14 C -0.105 4.105 15 H 0.098 0.902 16 C 0.107 3.893 17 N -0.620 5.620 18 C 0.597 3.403 19 O -0.570 6.570 20 C -0.003 4.003 21 C -0.084 4.084 22 C -0.253 4.253 23 S 0.128 5.872 24 C -0.166 4.166 25 C -0.128 4.128 26 C 0.070 3.930 27 N -0.533 5.533 28 H 0.431 0.569 29 C 0.132 3.868 30 C -0.120 4.120 31 H 0.065 0.935 32 H 0.249 0.751 33 H 0.371 0.629 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.149 0.851 41 H 0.209 0.791 42 H 0.173 0.827 43 H 0.055 0.945 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 -30.719 -2.638 30.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.373 5.373 10 C 0.077 3.923 11 H 0.072 0.928 12 C -0.178 4.178 13 C -0.121 4.121 14 C -0.124 4.124 15 H 0.117 0.883 16 C -0.014 4.014 17 N -0.354 5.354 18 C 0.388 3.612 19 O -0.450 6.450 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.373 4.373 23 S 0.387 5.613 24 C -0.302 4.302 25 C -0.160 4.160 26 C -0.051 4.051 27 N -0.142 5.142 28 H 0.277 0.723 29 C 0.011 3.989 30 C -0.140 4.140 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.202 0.798 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.167 0.833 41 H 0.226 0.774 42 H 0.190 0.810 43 H 0.073 0.927 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.299 -30.963 -0.936 30.978 hybrid contribution 0.580 2.645 -1.095 2.921 sum 0.879 -28.318 -2.030 28.404 Atomic orbital electron populations 1.69814 1.06637 1.25949 1.59829 1.25543 0.96302 1.01082 1.04127 0.85262 0.77185 0.79459 0.78186 1.20168 1.22597 1.20622 1.19600 0.91447 0.85212 1.40514 0.90427 1.42690 1.05249 1.01001 1.88396 1.20380 0.93847 0.83628 0.94400 0.92830 1.23601 1.00859 0.95929 0.97410 1.21679 1.02041 0.94897 0.93476 1.22101 1.00503 0.92421 0.97368 0.88325 1.21677 1.00770 0.98103 0.80831 1.49764 1.57929 1.15398 1.12262 1.16875 0.77321 0.83785 0.83244 1.90859 1.58980 1.70536 1.24642 1.19867 1.10994 0.93133 0.87779 1.20512 1.01013 0.90621 0.99374 1.22945 1.14072 1.01476 0.98767 1.83980 1.61937 1.03358 1.12035 1.25752 1.03801 1.04340 0.96305 1.19217 1.04864 0.89458 1.02490 1.18916 1.02674 0.88564 0.94896 1.42547 1.49089 1.10569 1.11984 0.72298 1.21416 0.99394 0.80843 0.97221 1.22298 1.00651 0.96917 0.94157 0.91650 0.94218 0.79765 0.93481 0.91119 0.91346 0.88353 0.87933 0.89415 0.83297 0.77409 0.81009 0.92654 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.74 13.06 21.65 0.28 -59.46 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.24 -12.78 9.96 84.03 0.84 -11.95 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.73 -35.73 5.10 -322.26 -1.64 -37.37 16 10 C 0.19 6.67 3.41 45.14 0.15 6.82 16 11 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 12 C -0.14 -4.00 6.74 32.80 0.22 -3.78 16 13 C -0.08 -1.60 6.72 31.13 0.21 -1.39 16 14 C -0.10 -2.02 2.76 -10.58 -0.03 -2.05 16 15 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 16 C 0.11 1.82 4.96 84.98 0.42 2.24 16 17 N -0.62 -16.32 3.42 -820.12 -2.81 -19.13 16 18 C 0.60 18.32 7.84 86.38 0.68 18.99 16 19 O -0.57 -22.30 17.19 -4.46 -0.08 -22.37 16 20 C 0.00 -0.08 6.87 40.14 0.28 0.19 16 21 C -0.08 -2.15 10.60 22.68 0.24 -1.91 16 22 C -0.25 -5.46 7.26 22.86 0.17 -5.29 16 23 S 0.13 1.94 23.31 -56.49 -1.32 0.62 16 24 C -0.17 -1.60 11.13 66.64 0.74 -0.85 16 25 C -0.13 -1.46 10.16 21.49 0.22 -1.24 16 26 C 0.07 1.26 7.67 38.41 0.29 1.56 16 27 N -0.53 -9.72 5.78 -177.14 -1.02 -10.74 16 28 H 0.43 5.38 4.89 -92.71 -0.45 4.92 16 29 C 0.13 4.06 6.81 85.08 0.58 4.64 16 30 C -0.12 -3.58 2.42 -10.61 -0.03 -3.60 16 31 H 0.07 2.20 7.93 -2.39 -0.02 2.18 16 32 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.37 19.83 7.68 -92.71 -0.71 19.11 16 34 H 0.05 1.65 7.98 -2.39 -0.02 1.63 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.14 6.74 -2.39 -0.02 1.13 16 39 H 0.09 1.28 7.63 -2.39 -0.02 1.27 16 40 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 41 H 0.21 0.45 8.06 -2.91 -0.02 0.42 16 42 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -74.47 369.60 0.77 -73.70 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.12 Total: 28.28 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 5.45 Total: -1.64 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -5.19 Total: -126.70 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.08 Total: -22.37 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.32 Total: 0.62 kcal Total: -74.47 0.77 -73.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026394250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.908 kcal (2) G-P(sol) polarization free energy of solvation -74.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds