Wall clock time and date at job start Wed Apr 1 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48500 * 109.47370 * 239.99437 * 3 2 1 5 5 H 1.48492 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46860 * 119.99817 * 3 2 1 7 7 C 1.38815 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99637 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00191 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.54594 * 32.36538 * 10 9 7 12 12 C 1.54953 * 110.07952 * 270.08527 * 10 9 7 13 13 C 1.56401 * 105.62226 * 232.85329 * 12 10 9 14 14 C 1.50993 * 101.59438 * 335.52786 * 13 12 10 15 15 H 1.08995 * 110.05157 * 290.65064 * 14 13 12 16 16 C 1.50336 * 125.22404 * 155.87149 * 14 13 12 17 17 N 1.50289 * 104.65372 * 215.34948 * 16 14 13 18 18 C 1.34780 * 126.31106 * 187.17851 * 17 16 14 19 19 O 1.21734 * 119.99229 * 180.43988 * 18 17 16 20 20 C 1.46406 * 120.00292 * 0.44288 * 18 17 16 21 21 C 1.35780 * 124.95848 * 179.97438 * 20 18 17 22 22 C 1.38872 * 115.18661 * 180.02562 * 21 20 18 23 23 N 1.39740 * 139.91440 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.64027 * 0.02562 * 23 22 21 25 25 C 1.36217 * 108.73472 * 179.97438 * 23 22 21 26 26 C 1.34513 * 109.29595 * 0.02562 * 25 23 22 27 27 C 1.38244 * 113.39033 * 0.02562 * 22 21 20 28 28 S 1.75615 * 124.96146 * 359.69889 * 20 18 17 29 29 C 1.49695 * 107.62503 * 7.55274 * 17 16 14 30 30 C 1.50290 * 110.49573 * 155.00041 * 10 9 7 31 31 H 1.09001 * 110.00115 * 39.02884 * 30 10 9 32 32 H 0.96998 * 119.99358 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99563 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.80884 * 114.07015 * 12 10 9 35 35 H 1.09000 * 110.79328 * 352.15940 * 12 10 9 36 36 H 1.08996 * 111.00676 * 217.45048 * 13 12 10 37 37 H 1.09003 * 111.03261 * 93.61552 * 13 12 10 38 38 H 1.09001 * 110.36433 * 334.66678 * 16 14 13 39 39 H 1.09000 * 110.36161 * 96.86135 * 16 14 13 40 40 H 1.08001 * 122.40647 * 0.02562 * 21 20 18 41 41 H 1.08007 * 125.35225 * 180.02562 * 25 23 22 42 42 H 1.08001 * 126.07522 * 179.97438 * 26 25 23 43 43 H 1.09002 * 110.84780 * 266.55084 * 29 17 16 44 44 H 1.08998 * 110.84243 * 143.14137 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9956 -3.5568 0.5487 12 6 2.3271 -4.1171 -1.4533 13 6 1.7869 -5.5824 -1.5381 14 6 1.8588 -6.0165 -0.0937 15 1 2.8993 -6.1205 0.2139 16 6 1.0267 -7.1036 0.5275 17 7 0.7589 -6.6248 1.9267 18 6 0.1633 -7.3277 2.9104 19 8 -0.0036 -6.8214 4.0048 20 6 -0.2829 -8.7000 2.6629 21 6 -0.8915 -9.4973 3.5780 22 6 -1.2294 -10.7658 3.1251 23 7 -1.8326 -11.9396 3.5845 24 1 -2.1834 -12.0827 4.4774 25 6 -1.8477 -12.8495 2.5708 26 6 -1.2781 -12.3081 1.4791 27 6 -0.8790 -10.9891 1.8065 28 16 -0.1151 -9.5529 1.1369 29 6 1.2653 -5.2200 2.0298 30 6 1.2157 -4.7502 0.5964 31 1 0.1798 -4.6387 0.2764 32 1 -0.4849 0.8401 -0.0004 33 1 0.3556 -2.3880 -0.0002 34 1 3.3982 -4.0989 -1.6544 35 1 1.8005 -3.4803 -2.1642 36 1 2.4303 -6.2004 -2.1642 37 1 0.7590 -5.6000 -1.9006 38 1 0.0952 -7.2305 -0.0243 39 1 1.5832 -8.0405 0.5511 40 1 -1.0981 -9.1685 4.5858 41 1 -2.2532 -13.8485 2.6338 42 1 -1.1481 -12.7930 0.5229 43 1 2.2873 -5.2028 2.4084 44 1 0.6104 -4.6168 2.6585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026407109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:28 Heat of formation + Delta-G solvation = 72.671353 kcal Electronic energy + Delta-G solvation = -27100.809439 eV Core-core repulsion = 23339.345180 eV Total energy + Delta-G solvation = -3761.464259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42289 -40.50993 -38.66699 -35.43952 -35.10209 -33.38474 -31.22249 -30.92135 -30.10831 -28.55463 -28.02502 -25.51650 -24.38535 -23.14166 -22.64566 -21.58369 -20.89705 -20.25229 -19.22320 -18.74496 -18.54547 -17.15766 -16.70542 -16.41291 -15.65308 -15.43160 -14.98890 -14.76836 -14.73631 -14.37920 -13.99461 -13.81435 -13.74810 -13.66248 -13.17394 -12.88411 -12.70143 -12.33453 -12.12925 -11.94721 -11.72052 -11.53224 -11.47992 -11.22500 -10.81838 -10.76697 -10.75061 -10.46445 -10.16281 -10.12096 -9.99695 -9.92091 -9.74717 -9.55003 -8.90282 -8.71261 -8.36205 -7.84291 -6.96061 -5.75678 -3.04876 0.37122 1.29443 1.82762 2.18134 2.39076 2.58910 2.94561 3.20722 3.45136 3.49829 3.50655 4.06598 4.44764 4.59275 4.61374 4.71150 4.85172 4.95065 5.10654 5.21088 5.24048 5.32807 5.43612 5.49910 5.56830 5.57741 5.67067 5.72463 5.75484 5.86298 5.94318 5.97552 6.03784 6.13780 6.19773 6.24562 6.33638 6.36690 6.46353 6.51297 6.63821 6.79704 7.06488 7.09909 7.45496 7.70950 8.10586 8.42435 9.53716 10.10447 10.44851 11.46643 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.002297 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.315404 B =12186.975368 C =12861.048841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.196 3.804 11 H 0.057 0.943 12 C -0.141 4.141 13 C -0.098 4.098 14 C -0.125 4.125 15 H 0.085 0.915 16 C 0.109 3.891 17 N -0.620 5.620 18 C 0.605 3.395 19 O -0.534 6.534 20 C -0.230 4.230 21 C -0.034 4.034 22 C 0.022 3.978 23 N -0.559 5.559 24 H 0.419 0.581 25 C 0.055 3.945 26 C -0.172 4.172 27 C -0.204 4.204 28 S 0.181 5.819 29 C 0.132 3.868 30 C -0.117 4.117 31 H 0.084 0.916 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.148 0.852 41 H 0.177 0.823 42 H 0.146 0.854 43 H 0.074 0.926 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -28.464 1.862 28.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.085 3.915 11 H 0.075 0.925 12 C -0.182 4.182 13 C -0.137 4.137 14 C -0.145 4.145 15 H 0.103 0.897 16 C -0.014 4.014 17 N -0.355 5.355 18 C 0.393 3.607 19 O -0.413 6.413 20 C -0.350 4.350 21 C -0.071 4.071 22 C -0.091 4.091 23 N -0.160 5.160 24 H 0.256 0.744 25 C -0.079 4.079 26 C -0.202 4.202 27 C -0.325 4.325 28 S 0.445 5.555 29 C 0.012 3.988 30 C -0.138 4.138 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.166 0.834 41 H 0.194 0.806 42 H 0.164 0.836 43 H 0.092 0.908 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.044 -27.689 1.281 27.738 hybrid contribution -0.708 0.276 1.743 1.902 sum -1.752 -27.412 3.025 27.634 Atomic orbital electron populations 1.69654 1.05100 1.25788 1.57479 1.24749 0.95495 0.97698 1.02940 0.86283 0.78527 0.83635 0.77822 1.21294 1.21763 1.21275 1.19196 0.90955 0.84107 1.42917 0.91194 1.42497 1.05697 0.99637 1.88269 1.19944 0.94177 0.85053 0.92373 0.92530 1.23640 1.00151 0.93825 1.00603 1.21776 1.01432 0.97278 0.93170 1.22138 0.99768 0.94621 0.97960 0.89698 1.21569 1.00399 0.97207 0.82263 1.49930 1.58771 1.15574 1.11194 1.16417 0.77497 0.83293 0.83510 1.90852 1.57075 1.70227 1.23149 1.23694 1.13155 0.99269 0.98874 1.19206 0.97792 0.89368 1.00690 1.18001 1.07195 0.90129 0.93766 1.41915 1.50353 1.10306 1.13399 0.74385 1.21872 1.03348 0.95353 0.87287 1.20139 1.07854 0.92481 0.99718 1.23703 1.09626 1.01234 0.97982 1.84161 1.60173 1.01061 1.10096 1.21516 0.99791 0.79907 0.97587 1.22548 1.01759 0.95736 0.93718 0.89793 0.93456 0.78135 0.92640 0.90602 0.92006 0.91461 0.90246 0.90404 0.83436 0.80616 0.83621 0.90812 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.39 5.07 -53.74 -0.27 -17.66 16 10 C 0.20 3.63 3.34 -68.25 -0.23 3.40 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.14 -2.27 6.69 -23.87 -0.16 -2.43 16 13 C -0.10 -1.22 6.71 -25.91 -0.17 -1.40 16 14 C -0.13 -1.56 2.75 -90.27 -0.25 -1.81 16 15 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 16 C 0.11 1.28 5.03 -3.25 -0.02 1.27 16 17 N -0.62 -9.11 3.46 -172.26 -0.60 -9.71 16 18 C 0.60 9.65 7.84 -12.97 -0.10 9.55 16 19 O -0.53 -10.25 17.10 5.16 0.09 -10.17 16 20 C -0.23 -3.06 6.33 -37.18 -0.24 -3.29 16 21 C -0.03 -0.42 9.88 -40.23 -0.40 -0.81 16 22 C 0.02 0.24 7.67 -84.02 -0.64 -0.41 16 23 N -0.56 -4.00 6.21 -10.89 -0.07 -4.07 16 24 H 0.42 1.71 8.96 -40.82 -0.37 1.35 16 25 C 0.06 0.34 11.85 -16.92 -0.20 0.14 16 26 C -0.17 -1.43 10.85 -39.60 -0.43 -1.86 16 27 C -0.20 -2.20 7.31 -38.28 -0.28 -2.48 16 28 S 0.18 1.96 18.66 -107.50 -2.01 -0.05 16 29 C 0.13 2.10 6.79 -3.31 -0.02 2.08 16 30 C -0.12 -1.86 2.45 -90.33 -0.22 -2.08 16 31 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.38 9.99 7.68 -40.82 -0.31 9.68 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.40 7.98 -51.93 -0.41 0.98 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.89 7.50 -51.93 -0.39 0.50 16 39 H 0.08 0.80 6.43 -49.88 -0.32 0.48 16 40 H 0.15 1.69 8.00 -52.49 -0.42 1.27 16 41 H 0.18 0.37 8.06 -52.48 -0.42 -0.06 16 42 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -33.65 369.05 -11.18 -44.83 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.98 Total: 8.51 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -3.61 Total: -7.25 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.21 Total: -58.68 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.01 Total: -0.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.65 -11.18 -44.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026407109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.497 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds