Wall clock time and date at job start Wed Apr 1 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48500 * 109.47370 * 239.99437 * 3 2 1 5 5 H 1.48492 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46860 * 119.99817 * 3 2 1 7 7 C 1.38815 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99637 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00191 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.54594 * 32.36538 * 10 9 7 12 12 C 1.54953 * 110.07952 * 270.08527 * 10 9 7 13 13 C 1.56401 * 105.62226 * 232.85329 * 12 10 9 14 14 C 1.50993 * 101.59438 * 335.52786 * 13 12 10 15 15 H 1.08995 * 110.05157 * 290.65064 * 14 13 12 16 16 C 1.50336 * 125.22404 * 155.87149 * 14 13 12 17 17 N 1.50289 * 104.65372 * 215.34948 * 16 14 13 18 18 C 1.34780 * 126.31106 * 187.17851 * 17 16 14 19 19 O 1.21734 * 119.99229 * 180.43988 * 18 17 16 20 20 C 1.46406 * 120.00292 * 0.44288 * 18 17 16 21 21 C 1.35780 * 124.95848 * 179.97438 * 20 18 17 22 22 C 1.38872 * 115.18661 * 180.02562 * 21 20 18 23 23 N 1.39740 * 139.91440 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.64027 * 0.02562 * 23 22 21 25 25 C 1.36217 * 108.73472 * 179.97438 * 23 22 21 26 26 C 1.34513 * 109.29595 * 0.02562 * 25 23 22 27 27 C 1.38244 * 113.39033 * 0.02562 * 22 21 20 28 28 S 1.75615 * 124.96146 * 359.69889 * 20 18 17 29 29 C 1.49695 * 107.62503 * 7.55274 * 17 16 14 30 30 C 1.50290 * 110.49573 * 155.00041 * 10 9 7 31 31 H 1.09001 * 110.00115 * 39.02884 * 30 10 9 32 32 H 0.96998 * 119.99358 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99563 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.80884 * 114.07015 * 12 10 9 35 35 H 1.09000 * 110.79328 * 352.15940 * 12 10 9 36 36 H 1.08996 * 111.00676 * 217.45048 * 13 12 10 37 37 H 1.09003 * 111.03261 * 93.61552 * 13 12 10 38 38 H 1.09001 * 110.36433 * 334.66678 * 16 14 13 39 39 H 1.09000 * 110.36161 * 96.86135 * 16 14 13 40 40 H 1.08001 * 122.40647 * 0.02562 * 21 20 18 41 41 H 1.08007 * 125.35225 * 180.02562 * 25 23 22 42 42 H 1.08001 * 126.07522 * 179.97438 * 26 25 23 43 43 H 1.09002 * 110.84780 * 266.55084 * 29 17 16 44 44 H 1.08998 * 110.84243 * 143.14137 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9956 -3.5568 0.5487 12 6 2.3271 -4.1171 -1.4533 13 6 1.7869 -5.5824 -1.5381 14 6 1.8588 -6.0165 -0.0937 15 1 2.8993 -6.1205 0.2139 16 6 1.0267 -7.1036 0.5275 17 7 0.7589 -6.6248 1.9267 18 6 0.1633 -7.3277 2.9104 19 8 -0.0036 -6.8214 4.0048 20 6 -0.2829 -8.7000 2.6629 21 6 -0.8915 -9.4973 3.5780 22 6 -1.2294 -10.7658 3.1251 23 7 -1.8326 -11.9396 3.5845 24 1 -2.1834 -12.0827 4.4774 25 6 -1.8477 -12.8495 2.5708 26 6 -1.2781 -12.3081 1.4791 27 6 -0.8790 -10.9891 1.8065 28 16 -0.1151 -9.5529 1.1369 29 6 1.2653 -5.2200 2.0298 30 6 1.2157 -4.7502 0.5964 31 1 0.1798 -4.6387 0.2764 32 1 -0.4849 0.8401 -0.0004 33 1 0.3556 -2.3880 -0.0002 34 1 3.3982 -4.0989 -1.6544 35 1 1.8005 -3.4803 -2.1642 36 1 2.4303 -6.2004 -2.1642 37 1 0.7590 -5.6000 -1.9006 38 1 0.0952 -7.2305 -0.0243 39 1 1.5832 -8.0405 0.5511 40 1 -1.0981 -9.1685 4.5858 41 1 -2.2532 -13.8485 2.6338 42 1 -1.1481 -12.7930 0.5229 43 1 2.2873 -5.2028 2.4084 44 1 0.6104 -4.6168 2.6585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026407109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:27 Heat of formation + Delta-G solvation = 50.804190 kcal Electronic energy + Delta-G solvation = -27101.757670 eV Core-core repulsion = 23339.345180 eV Total energy + Delta-G solvation = -3762.412490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09145 -41.72850 -39.91541 -36.85098 -36.03513 -35.09574 -32.68060 -31.88243 -31.29705 -29.95415 -28.90728 -27.04220 -25.41004 -24.88164 -23.77211 -22.37456 -21.63524 -21.44919 -20.53668 -19.77711 -19.39170 -19.07253 -17.75661 -17.65727 -16.61978 -16.56714 -16.43770 -16.01344 -15.69442 -15.51337 -15.39548 -15.10333 -14.87967 -14.53586 -14.38462 -14.13683 -13.82787 -13.48510 -13.20227 -13.17834 -13.02625 -12.91318 -12.62413 -12.55368 -12.44813 -12.37469 -12.15608 -11.82667 -11.71006 -11.61383 -11.33604 -11.22891 -10.97333 -10.86150 -10.64897 -9.90894 -9.12533 -8.96829 -8.56558 -7.91348 -5.19245 -0.51041 0.47088 1.00933 1.36486 1.47904 1.50827 1.56487 1.58293 1.75872 2.11047 2.21199 2.58373 2.90276 3.42564 3.46947 3.68309 3.87035 3.97239 4.04516 4.15463 4.18390 4.22305 4.26812 4.39215 4.48799 4.52562 4.57123 4.60751 4.67959 4.73922 4.76601 4.87684 4.96104 4.98604 5.02952 5.10599 5.12810 5.25514 5.37603 5.50615 5.53811 5.59527 5.66700 5.82008 6.28981 6.30675 6.62476 6.90235 7.36361 8.13528 8.35392 9.32056 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.002297 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.315404 B =12186.975368 C =12861.048841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.735 5.735 10 C 0.187 3.813 11 H 0.054 0.946 12 C -0.135 4.135 13 C -0.085 4.085 14 C -0.102 4.102 15 H 0.099 0.901 16 C 0.111 3.889 17 N -0.621 5.621 18 C 0.600 3.400 19 O -0.583 6.583 20 C -0.270 4.270 21 C -0.026 4.026 22 C -0.009 4.009 23 N -0.549 5.549 24 H 0.433 0.567 25 C 0.088 3.912 26 C -0.199 4.199 27 C -0.212 4.212 28 S 0.205 5.795 29 C 0.134 3.866 30 C -0.120 4.120 31 H 0.066 0.934 32 H 0.249 0.751 33 H 0.371 0.629 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.225 0.775 42 H 0.166 0.834 43 H 0.082 0.918 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 -32.486 0.621 32.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.207 1.207 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.374 5.374 10 C 0.078 3.922 11 H 0.072 0.928 12 C -0.175 4.175 13 C -0.123 4.123 14 C -0.122 4.122 15 H 0.117 0.883 16 C -0.011 4.011 17 N -0.354 5.354 18 C 0.390 3.610 19 O -0.466 6.466 20 C -0.390 4.390 21 C -0.063 4.063 22 C -0.121 4.121 23 N -0.151 5.151 24 H 0.273 0.727 25 C -0.047 4.047 26 C -0.228 4.228 27 C -0.334 4.334 28 S 0.469 5.531 29 C 0.012 3.988 30 C -0.140 4.140 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.202 0.798 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.160 0.840 41 H 0.242 0.758 42 H 0.183 0.817 43 H 0.100 0.900 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.124 -31.751 0.020 31.752 hybrid contribution -1.022 1.275 2.174 2.719 sum -1.146 -30.476 2.194 30.576 Atomic orbital electron populations 1.69823 1.06636 1.25883 1.59962 1.25547 0.96311 1.01072 1.04247 0.85253 0.77160 0.79449 0.78173 1.20160 1.22611 1.20658 1.19611 0.91455 0.85214 1.40330 0.90415 1.42716 1.05257 1.00997 1.88471 1.20236 0.93835 0.83625 0.94488 0.92815 1.23420 1.00939 0.95847 0.97336 1.21706 1.02180 0.94898 0.93490 1.22115 1.00272 0.92320 0.97490 0.88275 1.21726 1.01144 0.97780 0.80438 1.49941 1.58335 1.14796 1.12289 1.16848 0.76853 0.84303 0.82948 1.90804 1.59151 1.71602 1.25048 1.23416 1.16005 0.98432 1.01123 1.19302 0.96621 0.90104 1.00300 1.17936 1.09199 0.90738 0.94270 1.42065 1.49281 1.09266 1.14535 0.72653 1.22712 0.99964 0.96287 0.85712 1.20570 1.09020 0.91619 1.01583 1.24117 1.09038 1.02126 0.98112 1.83753 1.60306 1.00789 1.08236 1.21373 0.99468 0.80740 0.97176 1.22300 1.00596 0.96943 0.94152 0.91552 0.94264 0.79765 0.91134 0.93266 0.88413 0.91315 0.89317 0.87997 0.84012 0.75816 0.81678 0.90008 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 3 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.23 -12.91 9.96 84.03 0.84 -12.08 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -36.70 5.07 -323.93 -1.64 -38.34 16 10 C 0.19 7.00 3.34 44.79 0.15 7.15 16 11 H 0.05 2.03 8.09 -2.39 -0.02 2.01 16 12 C -0.14 -4.17 6.69 32.45 0.22 -3.96 16 13 C -0.08 -1.87 6.71 31.13 0.21 -1.66 16 14 C -0.10 -2.34 2.75 -10.57 -0.03 -2.37 16 15 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 16 C 0.11 2.44 5.03 84.78 0.43 2.87 16 17 N -0.62 -18.60 3.46 -817.11 -2.83 -21.43 16 18 C 0.60 20.07 7.84 86.37 0.68 20.74 16 19 O -0.58 -24.04 17.10 -4.46 -0.08 -24.12 16 20 C -0.27 -7.30 6.33 23.83 0.15 -7.15 16 21 C -0.03 -0.65 9.88 21.85 0.22 -0.43 16 22 C -0.01 -0.18 7.67 38.03 0.29 0.11 16 23 N -0.55 -6.17 6.21 -188.38 -1.17 -7.34 16 24 H 0.43 2.24 8.96 -92.71 -0.83 1.41 16 25 C 0.09 0.67 11.85 83.16 0.99 1.66 16 26 C -0.20 -2.55 10.85 22.26 0.24 -2.31 16 27 C -0.21 -4.11 7.31 23.11 0.17 -3.94 16 28 S 0.20 4.13 18.66 -56.49 -1.05 3.07 16 29 C 0.13 4.45 6.79 85.08 0.58 5.03 16 30 C -0.12 -3.86 2.45 -10.60 -0.03 -3.89 16 31 H 0.07 2.39 7.94 -2.39 -0.02 2.37 16 32 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.37 20.30 7.68 -92.71 -0.71 19.58 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.80 7.98 -2.39 -0.02 1.78 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.84 7.50 -2.39 -0.02 1.82 16 39 H 0.10 1.82 6.43 -3.69 -0.02 1.80 16 40 H 0.14 3.46 8.00 -2.91 -0.02 3.43 16 41 H 0.23 -0.53 8.06 -2.91 -0.02 -0.55 16 42 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.05 2.10 8.09 -2.39 -0.02 2.08 16 Total: -1.00 -77.81 369.05 0.60 -77.21 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.50 Total: 26.87 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 5.56 Total: -4.39 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.36 Total: -127.38 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.08 Total: -24.12 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.05 Total: 3.07 kcal Total: -77.81 0.60 -77.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026407109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.018 kcal (2) G-P(sol) polarization free energy of solvation -77.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds