Wall clock time and date at job start Wed Apr 1 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38909 * 119.47970 * 2 1 4 4 C 1.36797 * 120.30354 * 179.97438 * 3 2 1 5 5 C 1.38696 * 119.63015 * 359.97438 * 4 3 2 6 6 S 1.76256 * 134.18484 * 180.02562 * 5 4 3 7 7 N 1.55997 * 97.56473 * 179.74686 * 6 5 4 8 8 C 1.29692 * 111.74270 * 0.37021 * 7 6 5 9 9 C 1.47373 * 121.83136 * 179.82761 * 8 7 6 10 10 O 1.21619 * 120.00386 * 179.71492 * 9 8 7 11 11 N 1.34777 * 120.00127 * 359.72810 * 9 8 7 12 12 C 1.46503 * 120.00011 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46708 * 185.08684 * 12 11 9 14 14 H 1.09004 * 109.87593 * 303.54812 * 13 12 11 15 15 C 1.54324 * 109.88817 * 64.57111 * 13 12 11 16 16 C 1.55159 * 102.94521 * 141.60553 * 15 13 12 17 17 C 1.54912 * 101.58141 * 324.50131 * 16 15 13 18 18 N 1.47031 * 109.87946 * 182.37892 * 13 12 11 19 19 C 1.36934 * 125.64805 * 61.60594 * 18 13 12 20 20 H 1.08000 * 120.00270 * 13.60042 * 19 18 13 21 21 C 1.38808 * 119.99628 * 193.60384 * 19 18 13 22 22 N 1.31611 * 120.00376 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99581 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47253 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47040 * 120.00123 * 23 21 19 26 26 H 1.48502 * 109.47106 * 239.99453 * 23 21 19 27 27 C 1.40676 * 120.66892 * 359.97438 * 5 4 3 28 28 C 1.36333 * 119.48211 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47332 * 270.02390 * 1 2 3 30 30 H 1.09002 * 109.47251 * 30.02901 * 1 2 3 31 31 H 1.09004 * 109.46844 * 150.02866 * 1 2 3 32 32 H 1.08000 * 119.84719 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.18433 * 180.02562 * 4 3 2 34 34 H 0.96998 * 119.99798 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.47231 * 65.08215 * 12 11 9 36 36 H 1.08997 * 109.46653 * 305.08193 * 12 11 9 37 37 H 1.08995 * 110.72073 * 259.97321 * 15 13 12 38 38 H 1.09002 * 110.71713 * 23.24396 * 15 13 12 39 39 H 1.09008 * 110.99633 * 82.57346 * 16 15 13 40 40 H 1.08991 * 111.00234 * 206.42287 * 16 15 13 41 41 H 1.08999 * 110.36407 * 278.16979 * 17 16 15 42 42 H 1.09004 * 110.36349 * 155.84496 * 17 16 15 43 43 H 0.97002 * 120.00528 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.01711 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2092 0.0000 4 6 3.5585 1.2289 0.0005 5 6 4.2614 0.0333 0.0016 6 16 5.9736 -0.3851 0.0031 7 7 5.8061 -1.9360 0.0105 8 6 4.5568 -2.2843 0.0047 9 6 4.1443 -3.6991 0.0061 10 8 2.9630 -3.9882 0.0057 11 7 5.0762 -4.6728 0.0080 12 6 4.6661 -6.0792 0.0099 13 6 5.9027 -6.9707 0.1397 14 1 6.6054 -6.7490 -0.6635 15 6 6.5779 -6.7360 1.5075 16 6 7.0324 -8.1610 1.9199 17 6 5.8795 -9.0299 1.3581 18 7 5.5069 -8.3857 0.0855 19 6 4.8932 -9.0028 -0.9717 20 1 4.8566 -8.5151 -1.9346 21 6 4.3179 -10.2551 -0.8057 22 7 4.3628 -10.8496 0.3677 23 14 3.4800 -11.0965 -2.2477 24 1 3.5659 -10.2254 -3.4472 25 1 4.1547 -12.3898 -2.5264 26 1 2.0538 -11.3438 -1.9160 27 6 3.5821 -1.1985 0.0027 28 6 2.1780 -1.1868 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5134 32 1 1.6397 2.1381 0.0004 33 1 4.0880 2.1702 0.0009 34 1 6.0184 -4.4423 0.0081 35 1 4.1492 -6.3083 -0.9219 36 1 3.9970 -6.2614 0.8508 37 1 7.4362 -6.0720 1.4049 38 1 5.8632 -6.3359 2.2267 39 1 7.9814 -8.4196 1.4499 40 1 7.0976 -8.2518 3.0040 41 1 5.0338 -9.0287 2.0458 42 1 6.2241 -10.0488 1.1809 43 1 3.9604 -11.7246 0.4838 44 1 1.6298 -2.1174 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028072211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:54 Heat of formation + Delta-G solvation = 38.229650 kcal Electronic energy + Delta-G solvation = -26984.691044 eV Core-core repulsion = 23221.733281 eV Total energy + Delta-G solvation = -3762.957763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.75360 -39.19810 -37.71202 -37.13426 -34.33270 -32.87712 -32.47536 -31.09012 -29.74102 -28.83509 -27.34679 -26.26894 -24.75684 -23.86239 -22.94833 -21.53435 -20.43981 -20.07508 -19.47811 -18.66778 -17.66991 -16.65346 -16.54552 -15.74841 -15.61965 -15.50761 -14.86116 -14.69486 -14.47924 -14.28890 -14.05694 -13.86593 -13.73034 -13.32359 -12.97043 -12.56035 -12.31137 -12.12028 -12.06738 -11.92444 -11.88673 -11.75013 -11.40796 -11.30085 -10.95214 -10.94519 -10.80603 -10.24672 -10.10115 -9.98085 -9.95719 -9.84960 -9.76247 -9.66840 -9.23617 -8.74751 -8.59459 -8.07054 -6.85399 -5.76659 -3.13349 0.11602 0.79153 1.07491 1.44564 1.53822 3.06672 3.24582 3.39997 3.44237 3.46247 3.48143 4.05494 4.38775 4.48049 4.54154 4.81171 4.93306 5.02309 5.13608 5.27952 5.33196 5.34857 5.40969 5.51394 5.61847 5.63094 5.71762 5.75729 5.81846 5.82248 6.02610 6.07053 6.13854 6.25741 6.26196 6.46257 6.50530 6.54475 6.59953 6.69040 6.79030 7.04466 7.52652 7.60486 7.70813 7.79566 8.24496 8.32037 9.17185 9.77622 10.44660 11.35023 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002600 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.434809 B =10766.325626 C =12021.035572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.087 4.087 3 C -0.089 4.089 4 C -0.072 4.072 5 C -0.205 4.205 6 S 0.378 5.622 7 N -0.489 5.489 8 C 0.098 3.902 9 C 0.580 3.420 10 O -0.527 6.527 11 N -0.699 5.699 12 C 0.107 3.893 13 C 0.152 3.848 14 H 0.039 0.961 15 C -0.127 4.127 16 C -0.148 4.148 17 C 0.172 3.828 18 N -0.588 5.588 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C -0.083 4.083 28 C -0.042 4.042 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.404 0.596 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 26.176 1.602 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.094 4.094 5 C -0.326 4.326 6 S 0.537 5.463 7 N -0.315 5.315 8 C -0.091 4.091 9 C 0.360 3.640 10 O -0.403 6.403 11 N -0.350 5.350 12 C -0.017 4.017 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.165 4.165 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.361 4.361 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.094 4.094 28 C -0.064 4.064 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.239 0.761 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.439 25.826 1.559 25.913 hybrid contribution -1.759 -0.736 -0.698 2.031 sum -0.320 25.090 0.861 25.107 Atomic orbital electron populations 1.20845 0.90283 1.03288 1.02805 1.19672 0.96862 0.92559 0.99775 1.20952 0.93644 0.97955 0.98611 1.19887 0.93759 0.95202 1.00545 1.24249 1.01574 0.97759 1.08975 1.81346 1.02483 0.94871 1.67577 1.71446 1.23653 1.16701 1.19650 1.22072 0.86438 0.96286 1.04339 1.17168 0.86041 0.82705 0.78064 1.90788 1.16717 1.82404 1.50373 1.46026 1.09686 1.07023 1.72247 1.22377 0.99939 0.76577 1.02843 1.21128 0.92709 0.86508 0.95324 0.94375 1.22609 0.99251 0.97565 0.97047 1.23011 1.00333 0.95938 0.99423 1.21483 0.91934 0.95871 0.86018 1.44504 1.69761 1.01754 1.15229 1.19043 1.28485 0.99984 0.88617 0.90545 1.24901 0.99840 0.98253 0.96913 1.69945 1.48721 1.15896 1.21607 0.86068 0.79183 0.79229 0.81426 1.20364 1.21720 1.21584 1.19582 0.95164 0.89871 1.04775 1.20737 0.90865 0.99262 0.95554 0.90762 0.91277 0.90910 0.84840 0.84830 0.76096 0.91090 0.91146 0.92341 0.91849 0.92277 0.92329 0.95657 0.90699 0.93644 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.98 36.01 0.36 -0.44 16 2 C -0.09 -0.82 5.84 -105.06 -0.61 -1.43 16 3 C -0.09 -0.69 9.63 -39.85 -0.38 -1.07 16 4 C -0.07 -0.59 10.03 -39.93 -0.40 -0.99 16 5 C -0.20 -2.23 6.73 -38.49 -0.26 -2.48 16 6 S 0.38 3.84 23.36 -107.50 -2.51 1.33 16 7 N -0.49 -6.51 10.49 28.25 0.30 -6.21 16 8 C 0.10 1.44 6.82 -81.99 -0.56 0.88 16 9 C 0.58 9.96 7.81 -12.54 -0.10 9.87 16 10 O -0.53 -10.36 15.01 5.26 0.08 -10.28 16 11 N -0.70 -11.62 5.32 -61.40 -0.33 -11.95 16 12 C 0.11 2.12 5.07 -4.04 -0.02 2.10 16 13 C 0.15 3.07 3.22 -66.95 -0.22 2.85 16 14 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 15 C -0.13 -2.20 6.10 -24.90 -0.15 -2.35 16 16 C -0.15 -2.77 7.09 -24.58 -0.17 -2.95 16 17 C 0.17 4.12 5.43 -2.53 -0.01 4.11 16 18 N -0.59 -14.69 3.13 -162.57 -0.51 -15.20 16 19 C -0.23 -6.40 9.76 -15.06 -0.15 -6.54 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 21 C 0.00 -0.05 5.47 -17.44 -0.10 -0.15 16 22 N -0.92 -26.67 10.53 55.49 0.58 -26.09 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C -0.08 -1.11 6.10 -105.09 -0.64 -1.76 16 28 C -0.04 -0.52 9.17 -39.45 -0.36 -0.88 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.07 0.52 8.07 -51.93 -0.42 0.11 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 34 H 0.40 5.97 7.77 -40.82 -0.32 5.66 16 35 H 0.07 1.55 7.92 -51.93 -0.41 1.14 16 36 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.09 7.81 -51.93 -0.41 0.69 16 39 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.07 2.00 6.85 -51.93 -0.36 1.64 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.15 2.01 6.64 -52.49 -0.35 1.66 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -31.74 375.21 -11.55 -43.29 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.02 Total: 3.56 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.78 Total: -1.24 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.05 Total: -59.45 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.51 Total: 1.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.74 -11.55 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028072211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.519 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds