Wall clock time and date at job start Wed Apr 1 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38909 * 119.47970 * 2 1 4 4 C 1.36797 * 120.30354 * 179.97438 * 3 2 1 5 5 C 1.38696 * 119.63015 * 359.97438 * 4 3 2 6 6 S 1.76256 * 134.18484 * 180.02562 * 5 4 3 7 7 N 1.55997 * 97.56473 * 179.74686 * 6 5 4 8 8 C 1.29692 * 111.74270 * 0.37021 * 7 6 5 9 9 C 1.47373 * 121.83136 * 179.82761 * 8 7 6 10 10 O 1.21619 * 120.00386 * 179.71492 * 9 8 7 11 11 N 1.34777 * 120.00127 * 359.72810 * 9 8 7 12 12 C 1.46503 * 120.00011 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46708 * 185.08684 * 12 11 9 14 14 H 1.09004 * 109.87593 * 303.54812 * 13 12 11 15 15 C 1.54324 * 109.88817 * 64.57111 * 13 12 11 16 16 C 1.55159 * 102.94521 * 141.60553 * 15 13 12 17 17 C 1.54912 * 101.58141 * 324.50131 * 16 15 13 18 18 N 1.47031 * 109.87946 * 182.37892 * 13 12 11 19 19 C 1.36934 * 125.64805 * 61.60594 * 18 13 12 20 20 H 1.08000 * 120.00270 * 13.60042 * 19 18 13 21 21 C 1.38808 * 119.99628 * 193.60384 * 19 18 13 22 22 N 1.31611 * 120.00376 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99581 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47253 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47040 * 120.00123 * 23 21 19 26 26 H 1.48502 * 109.47106 * 239.99453 * 23 21 19 27 27 C 1.40676 * 120.66892 * 359.97438 * 5 4 3 28 28 C 1.36333 * 119.48211 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47332 * 270.02390 * 1 2 3 30 30 H 1.09002 * 109.47251 * 30.02901 * 1 2 3 31 31 H 1.09004 * 109.46844 * 150.02866 * 1 2 3 32 32 H 1.08000 * 119.84719 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.18433 * 180.02562 * 4 3 2 34 34 H 0.96998 * 119.99798 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.47231 * 65.08215 * 12 11 9 36 36 H 1.08997 * 109.46653 * 305.08193 * 12 11 9 37 37 H 1.08995 * 110.72073 * 259.97321 * 15 13 12 38 38 H 1.09002 * 110.71713 * 23.24396 * 15 13 12 39 39 H 1.09008 * 110.99633 * 82.57346 * 16 15 13 40 40 H 1.08991 * 111.00234 * 206.42287 * 16 15 13 41 41 H 1.08999 * 110.36407 * 278.16979 * 17 16 15 42 42 H 1.09004 * 110.36349 * 155.84496 * 17 16 15 43 43 H 0.97002 * 120.00528 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.01711 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2092 0.0000 4 6 3.5585 1.2289 0.0005 5 6 4.2614 0.0333 0.0016 6 16 5.9736 -0.3851 0.0031 7 7 5.8061 -1.9360 0.0105 8 6 4.5568 -2.2843 0.0047 9 6 4.1443 -3.6991 0.0061 10 8 2.9630 -3.9882 0.0057 11 7 5.0762 -4.6728 0.0080 12 6 4.6661 -6.0792 0.0099 13 6 5.9027 -6.9707 0.1397 14 1 6.6054 -6.7490 -0.6635 15 6 6.5779 -6.7360 1.5075 16 6 7.0324 -8.1610 1.9199 17 6 5.8795 -9.0299 1.3581 18 7 5.5069 -8.3857 0.0855 19 6 4.8932 -9.0028 -0.9717 20 1 4.8566 -8.5151 -1.9346 21 6 4.3179 -10.2551 -0.8057 22 7 4.3628 -10.8496 0.3677 23 14 3.4800 -11.0965 -2.2477 24 1 3.5659 -10.2254 -3.4472 25 1 4.1547 -12.3898 -2.5264 26 1 2.0538 -11.3438 -1.9160 27 6 3.5821 -1.1985 0.0027 28 6 2.1780 -1.1868 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5134 32 1 1.6397 2.1381 0.0004 33 1 4.0880 2.1702 0.0009 34 1 6.0184 -4.4423 0.0081 35 1 4.1492 -6.3083 -0.9219 36 1 3.9970 -6.2614 0.8508 37 1 7.4362 -6.0720 1.4049 38 1 5.8632 -6.3359 2.2267 39 1 7.9814 -8.4196 1.4499 40 1 7.0976 -8.2518 3.0040 41 1 5.0338 -9.0287 2.0458 42 1 6.2241 -10.0488 1.1809 43 1 3.9604 -11.7246 0.4838 44 1 1.6298 -2.1174 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028072211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:53 Heat of formation + Delta-G solvation = 18.681649 kcal Electronic energy + Delta-G solvation = -26985.538709 eV Core-core repulsion = 23221.733281 eV Total energy + Delta-G solvation = -3763.805428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.75772 -40.39050 -39.29105 -38.17001 -35.88377 -34.44301 -33.57360 -31.89216 -31.50221 -30.57148 -28.04517 -27.53345 -26.60799 -25.30770 -23.88926 -22.44773 -22.03584 -21.50413 -21.08987 -19.59978 -19.00443 -18.37747 -17.61408 -17.10070 -16.82817 -16.59047 -16.36972 -16.03443 -15.77913 -15.55760 -15.33802 -14.97257 -14.66150 -14.60013 -14.35431 -13.98711 -13.69550 -13.46585 -13.17021 -13.04363 -13.01944 -12.88791 -12.81476 -12.71587 -12.61436 -12.39343 -12.00034 -11.90114 -11.78779 -11.75327 -11.52379 -11.46001 -11.12204 -10.78841 -10.71563 -10.23314 -9.97420 -8.90358 -8.87833 -7.90183 -5.28303 -0.81749 -0.00263 0.26742 0.54265 0.60443 1.42859 1.44732 1.54427 1.92381 1.94890 2.47368 2.57315 3.16131 3.28798 3.49798 3.71895 3.81704 3.90121 3.92419 3.95068 4.20326 4.21023 4.34128 4.36235 4.39116 4.48525 4.66969 4.70777 4.77762 4.84288 4.88663 4.93916 4.96677 5.08634 5.11828 5.14417 5.17550 5.25213 5.28041 5.43400 5.49644 5.55894 5.63723 5.75297 5.83468 6.20048 6.37981 6.98818 7.06721 7.72761 8.38781 9.20573 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002600 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.434809 B =10766.325626 C =12021.035572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.082 4.082 4 C -0.063 4.063 5 C -0.219 4.219 6 S 0.453 5.547 7 N -0.505 5.505 8 C 0.067 3.933 9 C 0.578 3.422 10 O -0.563 6.563 11 N -0.690 5.690 12 C 0.129 3.871 13 C 0.149 3.851 14 H 0.049 0.951 15 C -0.114 4.114 16 C -0.132 4.132 17 C 0.174 3.826 18 N -0.609 5.609 19 C -0.240 4.240 20 H 0.076 0.924 21 C -0.059 4.059 22 N -0.945 5.945 23 Si 0.973 3.027 24 H -0.268 1.268 25 H -0.288 1.288 26 H -0.293 1.293 27 C -0.108 4.108 28 C -0.079 4.079 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.416 0.584 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.083 0.917 41 H -0.007 1.007 42 H 0.041 0.959 43 H 0.248 0.752 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.325 30.635 1.412 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.105 4.105 4 C -0.085 4.085 5 C -0.340 4.340 6 S 0.613 5.387 7 N -0.334 5.334 8 C -0.120 4.120 9 C 0.360 3.640 10 O -0.442 6.442 11 N -0.342 5.342 12 C 0.003 3.997 13 C 0.041 3.959 14 H 0.067 0.933 15 C -0.152 4.152 16 C -0.171 4.171 17 C 0.049 3.951 18 N -0.334 5.334 19 C -0.369 4.369 20 H 0.094 0.906 21 C -0.253 4.253 22 N -0.593 5.593 23 Si 0.801 3.199 24 H -0.192 1.192 25 H -0.214 1.214 26 H -0.221 1.221 27 C -0.118 4.118 28 C -0.101 4.101 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.193 0.807 33 H 0.191 0.809 34 H 0.253 0.747 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.011 0.989 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.732 30.336 1.363 30.489 hybrid contribution -2.133 -1.896 -0.644 2.926 sum 0.599 28.439 0.719 28.455 Atomic orbital electron populations 1.20923 0.88739 1.04048 1.03573 1.20019 0.98110 0.92286 0.97730 1.21426 0.93779 0.98552 0.96703 1.20441 0.94143 0.95599 0.98290 1.24542 1.01968 0.97830 1.09687 1.80967 1.01215 0.91913 1.64590 1.71120 1.23328 1.19766 1.19157 1.21618 0.87411 0.94856 1.08148 1.17597 0.85462 0.84057 0.76846 1.90760 1.18227 1.83373 1.51792 1.45747 1.10320 1.05566 1.72535 1.21829 0.99084 0.78621 1.00180 1.21299 0.92760 0.84088 0.97718 0.93307 1.22584 1.00302 0.97490 0.94794 1.22879 0.98280 0.95107 1.00814 1.21296 0.92806 0.95535 0.85500 1.44752 1.69647 1.04105 1.14859 1.19338 1.27954 1.00126 0.89520 0.90575 1.25679 1.01064 0.99180 0.99370 1.70142 1.49841 1.15953 1.23364 0.85095 0.77608 0.78205 0.78953 1.19228 1.21447 1.22055 1.19661 0.95523 0.90531 1.06058 1.20681 0.90939 0.99597 0.98908 0.89888 0.88612 0.92065 0.80744 0.80914 0.74703 0.94028 0.93718 0.88301 0.91806 0.91050 0.89805 0.98932 0.94088 0.94234 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.98 71.24 0.71 -0.72 16 2 C -0.08 -1.39 5.84 -20.15 -0.12 -1.50 16 3 C -0.08 -0.94 9.63 22.09 0.21 -0.73 16 4 C -0.06 -0.78 10.03 22.04 0.22 -0.56 16 5 C -0.22 -4.25 6.73 22.98 0.15 -4.09 16 6 S 0.45 7.97 23.36 -56.49 -1.32 6.65 16 7 N -0.51 -12.88 10.49 -64.55 -0.68 -13.56 16 8 C 0.07 2.00 6.82 43.85 0.30 2.29 16 9 C 0.58 20.93 7.81 86.65 0.68 21.60 16 10 O -0.56 -24.00 15.01 -4.09 -0.06 -24.06 16 11 N -0.69 -23.58 5.32 -466.42 -2.48 -26.06 16 12 C 0.13 5.33 5.07 86.38 0.44 5.76 16 13 C 0.15 6.05 3.22 45.34 0.15 6.20 16 14 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 15 C -0.11 -3.76 6.10 31.78 0.19 -3.57 16 16 C -0.13 -4.78 7.09 31.99 0.23 -4.55 16 17 C 0.17 8.64 5.43 86.86 0.47 9.11 16 18 N -0.61 -31.44 3.13 -668.24 -2.09 -33.53 16 19 C -0.24 -13.67 9.76 84.03 0.82 -12.85 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.06 -3.43 5.47 84.86 0.46 -2.97 16 22 N -0.95 -57.64 10.53 21.65 0.23 -57.41 16 23 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 27 C -0.11 -2.89 6.10 -20.17 -0.12 -3.01 16 28 C -0.08 -2.02 9.17 22.35 0.21 -1.82 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.67 8.08 -2.39 -0.02 0.65 16 31 H 0.06 0.90 8.07 -2.38 -0.02 0.88 16 32 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 33 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 34 H 0.42 12.09 7.77 -92.71 -0.72 11.37 16 35 H 0.04 1.94 7.92 -2.39 -0.02 1.92 16 36 H 0.04 2.06 8.08 -2.39 -0.02 2.04 16 37 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.06 2.13 7.81 -2.39 -0.02 2.11 16 39 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H -0.01 -0.41 8.08 -2.39 -0.02 -0.43 16 42 H 0.04 2.29 6.85 -2.39 -0.02 2.27 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.12 3.67 6.64 -2.91 -0.02 3.65 16 Total: -1.00 -75.21 375.21 0.94 -74.27 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.31 Total: 16.03 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.00 Total: 8.61 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -5.02 Total: -130.56 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.06 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 16 Polarization: 7.97 SS G_CDS: -1.32 Total: 6.65 kcal Total: -75.21 0.94 -74.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028072211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.950 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds