Wall clock time and date at job start Wed Apr 1 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38897 * 119.47961 * 2 1 4 4 C 1.36807 * 120.30439 * 179.97438 * 3 2 1 5 5 C 1.38701 * 119.62723 * 0.02562 * 4 3 2 6 6 S 1.76256 * 134.18347 * 180.02562 * 5 4 3 7 7 N 1.56011 * 97.56033 * 179.79580 * 6 5 4 8 8 C 1.29684 * 111.74259 * 0.36471 * 7 6 5 9 9 C 1.47381 * 121.83011 * 179.83225 * 8 7 6 10 10 O 1.21614 * 119.99940 * 179.71537 * 9 8 7 11 11 N 1.34772 * 119.99868 * 359.72429 * 9 8 7 12 12 C 1.46502 * 120.00034 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46917 * 185.97448 * 12 11 9 14 14 H 1.08997 * 109.99752 * 296.11264 * 13 12 11 15 15 C 1.54327 * 109.88009 * 175.02189 * 13 12 11 16 16 C 1.55278 * 103.00463 * 218.46914 * 15 13 12 17 17 C 1.54901 * 101.52980 * 35.35831 * 16 15 13 18 18 N 1.47014 * 109.88274 * 57.21041 * 13 12 11 19 19 C 1.36941 * 125.65213 * 298.33634 * 18 13 12 20 20 H 1.07994 * 119.99505 * 330.82374 * 19 18 13 21 21 C 1.38811 * 120.00090 * 150.82444 * 19 18 13 22 22 N 1.31614 * 119.99845 * 163.69700 * 21 19 18 23 23 Si 1.86800 * 119.99959 * 343.70213 * 21 19 18 24 24 H 1.48494 * 109.47560 * 84.83791 * 23 21 19 25 25 H 1.48498 * 109.46771 * 204.83792 * 23 21 19 26 26 H 1.48497 * 109.46985 * 324.83333 * 23 21 19 27 27 C 1.40674 * 120.66926 * 0.02562 * 5 4 3 28 28 C 1.36336 * 119.47926 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47692 * 269.98243 * 1 2 3 30 30 H 1.09003 * 109.47040 * 29.97812 * 1 2 3 31 31 H 1.09004 * 109.47510 * 149.97517 * 1 2 3 32 32 H 1.07998 * 119.85480 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.18841 * 180.02562 * 4 3 2 34 34 H 0.97003 * 119.99911 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.46906 * 65.98036 * 12 11 9 36 36 H 1.08997 * 109.47103 * 305.97263 * 12 11 9 37 37 H 1.09005 * 110.71722 * 336.75134 * 15 13 12 38 38 H 1.08995 * 110.72060 * 100.02486 * 15 13 12 39 39 H 1.09000 * 110.95498 * 277.33374 * 16 15 13 40 40 H 1.08995 * 111.09889 * 153.44956 * 16 15 13 41 41 H 1.08998 * 110.37164 * 204.23084 * 17 16 15 42 42 H 1.09007 * 110.36539 * 82.02008 * 17 16 15 43 43 H 0.96999 * 120.00325 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.01758 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2091 0.0000 4 6 3.5585 1.2288 0.0005 5 6 4.2614 0.0331 0.0005 6 16 5.9736 -0.3852 0.0017 7 7 5.8059 -1.9363 0.0063 8 6 4.5567 -2.2844 -0.0002 9 6 4.1441 -3.6993 -0.0012 10 8 2.9627 -3.9882 -0.0022 11 7 5.0759 -4.6730 -0.0009 12 6 4.6658 -6.0794 -0.0013 13 6 5.9004 -6.9706 0.1493 14 1 6.5559 -6.8482 -0.7128 15 6 5.4695 -8.4471 0.2754 16 6 6.4612 -9.0118 1.3284 17 6 6.6382 -7.7952 2.2707 18 7 6.6229 -6.6200 1.3807 19 6 7.1885 -5.4035 1.6554 20 1 7.5501 -4.7820 0.8496 21 6 7.2969 -4.9692 2.9694 22 7 8.1082 -3.9774 3.2698 23 14 6.2914 -5.7927 4.3111 24 1 7.0080 -6.9992 4.7969 25 1 6.0985 -4.8445 5.4375 26 1 4.9683 -6.1889 3.7656 27 6 3.5820 -1.1987 -0.0006 28 6 2.1779 -1.1868 -0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6397 2.1381 -0.0004 33 1 4.0880 2.1700 0.0009 34 1 6.0182 -4.4425 -0.0004 35 1 4.1630 -6.3109 -0.9403 36 1 3.9842 -6.2594 0.8299 37 1 4.4435 -8.5200 0.6365 38 1 5.5817 -8.9644 -0.6774 39 1 7.4080 -9.2872 0.8638 40 1 6.0282 -9.8587 1.8607 41 1 7.5898 -7.8592 2.7983 42 1 5.8138 -7.7432 2.9820 43 1 8.1843 -3.6742 4.1880 44 1 1.6297 -2.1174 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028072213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:58 Heat of formation + Delta-G solvation = 43.619658 kcal Electronic energy + Delta-G solvation = -28028.022220 eV Core-core repulsion = 24265.298185 eV Total energy + Delta-G solvation = -3762.724035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.37872 -38.96472 -37.88159 -36.79129 -33.94728 -32.67207 -32.58182 -30.77150 -30.00556 -29.48709 -27.09683 -26.14856 -24.68766 -23.67363 -22.71113 -21.37108 -20.87470 -19.82535 -19.36019 -18.28740 -17.42907 -16.67014 -16.25333 -15.70797 -15.28942 -15.17961 -15.05029 -15.04261 -14.32923 -14.06862 -13.80174 -13.53878 -13.38218 -13.31199 -12.97233 -12.62102 -12.54487 -12.36304 -12.01772 -11.77861 -11.69150 -11.60733 -11.29762 -11.16210 -10.95229 -10.88416 -10.70056 -10.55961 -10.53022 -10.10165 -9.95900 -9.61534 -9.54092 -9.40535 -8.90630 -8.73302 -8.36167 -7.68354 -7.00239 -6.01025 -3.40728 0.54287 1.10529 1.50054 1.81924 2.01472 3.31327 3.39500 3.45478 3.49345 3.65057 3.84201 4.41318 4.49897 4.69412 4.80655 4.93343 5.08644 5.16639 5.25990 5.26936 5.30916 5.38973 5.49680 5.50756 5.53381 5.58873 5.81746 5.87873 5.90610 5.97230 6.06960 6.09420 6.09719 6.12307 6.23711 6.28911 6.37141 6.43416 6.55546 6.63804 6.76058 6.82040 6.83448 7.09386 7.73931 8.18498 8.26704 8.70729 8.78423 9.61753 10.14845 11.13881 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.003718 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.703197 B = 7529.564978 C = 8295.717662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.095 4.095 4 C -0.070 4.070 5 C -0.211 4.211 6 S 0.388 5.612 7 N -0.460 5.460 8 C 0.089 3.911 9 C 0.583 3.417 10 O -0.553 6.553 11 N -0.676 5.676 12 C 0.113 3.887 13 C 0.143 3.857 14 H 0.050 0.950 15 C -0.123 4.123 16 C -0.131 4.131 17 C 0.111 3.889 18 N -0.602 5.602 19 C -0.247 4.247 20 H 0.089 0.911 21 C 0.038 3.962 22 N -0.900 5.900 23 Si 0.885 3.115 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.274 1.274 27 C -0.080 4.080 28 C -0.044 4.044 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.422 0.578 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.263 0.737 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 6.323 -8.512 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.092 4.092 5 C -0.332 4.332 6 S 0.547 5.453 7 N -0.285 5.285 8 C -0.099 4.099 9 C 0.363 3.637 10 O -0.432 6.432 11 N -0.329 5.329 12 C -0.013 4.013 13 C 0.036 3.964 14 H 0.068 0.932 15 C -0.161 4.161 16 C -0.169 4.169 17 C -0.014 4.014 18 N -0.328 5.328 19 C -0.374 4.374 20 H 0.106 0.894 21 C -0.163 4.163 22 N -0.542 5.542 23 Si 0.716 3.284 24 H -0.212 1.212 25 H -0.232 1.232 26 H -0.199 1.199 27 C -0.091 4.091 28 C -0.066 4.066 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.520 6.445 -8.358 13.564 hybrid contribution -1.759 -0.633 1.153 2.197 sum -10.279 5.812 -7.205 13.833 Atomic orbital electron populations 1.20802 0.90617 1.02914 1.02553 1.19593 0.96562 0.92663 1.00640 1.20870 0.93663 0.97732 0.99551 1.19864 0.93689 0.95195 1.00428 1.24388 1.02327 0.97666 1.08852 1.81436 1.01754 0.95373 1.66773 1.71548 1.23370 1.16017 1.17595 1.21949 0.86380 0.96143 1.05417 1.17133 0.85761 0.83049 0.77732 1.90689 1.17022 1.82788 1.52684 1.46095 1.11363 1.05428 1.70043 1.22009 0.98378 0.80504 1.00406 1.21361 0.91113 0.92083 0.91829 0.93249 1.22543 0.99359 0.95021 0.99198 1.22733 0.99147 0.97529 0.97501 1.21966 0.99278 0.86708 0.93437 1.44829 1.62457 1.09263 1.16251 1.18370 1.32797 0.92913 0.93309 0.89396 1.25192 0.97869 0.95898 0.97365 1.69774 1.36502 1.28829 1.19056 0.86899 0.81940 0.77875 0.81712 1.21167 1.23187 1.19938 1.19612 0.95068 0.90040 1.04355 1.20665 0.90951 0.98958 0.95986 0.91022 0.91485 0.91203 0.85159 0.85017 0.73517 0.92600 0.91742 0.91368 0.91276 0.91265 0.91724 0.92548 0.95883 0.92684 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.98 36.01 0.36 -0.63 16 2 C -0.09 -1.11 5.84 -105.06 -0.61 -1.73 16 3 C -0.10 -1.01 9.63 -39.86 -0.38 -1.40 16 4 C -0.07 -0.82 10.03 -39.93 -0.40 -1.22 16 5 C -0.21 -3.18 6.73 -38.49 -0.26 -3.44 16 6 S 0.39 6.12 23.36 -107.50 -2.51 3.61 16 7 N -0.46 -9.14 10.49 28.25 0.30 -8.84 16 8 C 0.09 1.77 6.82 -81.99 -0.56 1.22 16 9 C 0.58 12.37 7.81 -12.54 -0.10 12.28 16 10 O -0.55 -12.08 15.00 5.27 0.08 -12.00 16 11 N -0.68 -14.27 4.81 -61.39 -0.30 -14.57 16 12 C 0.11 2.17 5.26 -4.04 -0.02 2.15 16 13 C 0.14 2.69 3.41 -66.95 -0.23 2.47 16 14 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 15 C -0.12 -1.87 6.48 -24.83 -0.16 -2.03 16 16 C -0.13 -2.09 7.10 -24.52 -0.17 -2.27 16 17 C 0.11 2.34 4.79 -2.53 -0.01 2.33 16 18 N -0.60 -13.82 2.81 -162.57 -0.46 -14.28 16 19 C -0.25 -6.58 8.44 -15.06 -0.13 -6.71 16 20 H 0.09 2.50 6.79 -52.49 -0.36 2.14 16 21 C 0.04 1.07 5.47 -17.43 -0.10 0.97 16 22 N -0.90 -27.02 13.97 55.49 0.78 -26.25 16 23 Si 0.89 23.01 24.38 -169.99 -4.14 18.87 16 24 H -0.28 -7.12 6.87 56.52 0.39 -6.73 16 25 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 26 H -0.27 -7.17 6.66 56.52 0.38 -6.80 16 27 C -0.08 -1.38 6.10 -105.09 -0.64 -2.03 16 28 C -0.04 -0.67 9.17 -39.45 -0.36 -1.03 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.42 9.44 5.04 -40.82 -0.21 9.23 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.35 8.06 -51.93 -0.42 0.93 16 37 H 0.07 1.00 7.80 -51.93 -0.41 0.59 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.26 7.47 -51.93 -0.39 0.87 16 42 H 0.02 0.52 5.23 -51.93 -0.27 0.25 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.15 2.32 6.64 -52.49 -0.35 1.97 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -32.44 364.93 -10.32 -42.76 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.79 Total: 6.25 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.78 Total: -1.06 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 0.32 Total: -63.94 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.14 Total: 18.87 kcal Atomic # 16 Polarization: 6.12 SS G_CDS: -2.51 Total: 3.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.44 -10.32 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028072213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.383 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds