Wall clock time and date at job start Wed Apr 1 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38897 * 119.47961 * 2 1 4 4 C 1.36807 * 120.30439 * 179.97438 * 3 2 1 5 5 C 1.38701 * 119.62723 * 0.02562 * 4 3 2 6 6 S 1.76256 * 134.18347 * 180.02562 * 5 4 3 7 7 N 1.56011 * 97.56033 * 179.79580 * 6 5 4 8 8 C 1.29684 * 111.74259 * 0.36471 * 7 6 5 9 9 C 1.47381 * 121.83011 * 179.83225 * 8 7 6 10 10 O 1.21614 * 119.99940 * 179.71537 * 9 8 7 11 11 N 1.34772 * 119.99868 * 359.72429 * 9 8 7 12 12 C 1.46502 * 120.00034 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46917 * 185.97448 * 12 11 9 14 14 H 1.08997 * 109.99752 * 296.11264 * 13 12 11 15 15 C 1.54327 * 109.88009 * 175.02189 * 13 12 11 16 16 C 1.55278 * 103.00463 * 218.46914 * 15 13 12 17 17 C 1.54901 * 101.52980 * 35.35831 * 16 15 13 18 18 N 1.47014 * 109.88274 * 57.21041 * 13 12 11 19 19 C 1.36941 * 125.65213 * 298.33634 * 18 13 12 20 20 H 1.07994 * 119.99505 * 330.82374 * 19 18 13 21 21 C 1.38811 * 120.00090 * 150.82444 * 19 18 13 22 22 N 1.31614 * 119.99845 * 163.69700 * 21 19 18 23 23 Si 1.86800 * 119.99959 * 343.70213 * 21 19 18 24 24 H 1.48494 * 109.47560 * 84.83791 * 23 21 19 25 25 H 1.48498 * 109.46771 * 204.83792 * 23 21 19 26 26 H 1.48497 * 109.46985 * 324.83333 * 23 21 19 27 27 C 1.40674 * 120.66926 * 0.02562 * 5 4 3 28 28 C 1.36336 * 119.47926 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47692 * 269.98243 * 1 2 3 30 30 H 1.09003 * 109.47040 * 29.97812 * 1 2 3 31 31 H 1.09004 * 109.47510 * 149.97517 * 1 2 3 32 32 H 1.07998 * 119.85480 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.18841 * 180.02562 * 4 3 2 34 34 H 0.97003 * 119.99911 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.46906 * 65.98036 * 12 11 9 36 36 H 1.08997 * 109.47103 * 305.97263 * 12 11 9 37 37 H 1.09005 * 110.71722 * 336.75134 * 15 13 12 38 38 H 1.08995 * 110.72060 * 100.02486 * 15 13 12 39 39 H 1.09000 * 110.95498 * 277.33374 * 16 15 13 40 40 H 1.08995 * 111.09889 * 153.44956 * 16 15 13 41 41 H 1.08998 * 110.37164 * 204.23084 * 17 16 15 42 42 H 1.09007 * 110.36539 * 82.02008 * 17 16 15 43 43 H 0.96999 * 120.00325 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.01758 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2091 0.0000 4 6 3.5585 1.2288 0.0005 5 6 4.2614 0.0331 0.0005 6 16 5.9736 -0.3852 0.0017 7 7 5.8059 -1.9363 0.0063 8 6 4.5567 -2.2844 -0.0002 9 6 4.1441 -3.6993 -0.0012 10 8 2.9627 -3.9882 -0.0022 11 7 5.0759 -4.6730 -0.0009 12 6 4.6658 -6.0794 -0.0013 13 6 5.9004 -6.9706 0.1493 14 1 6.5559 -6.8482 -0.7128 15 6 5.4695 -8.4471 0.2754 16 6 6.4612 -9.0118 1.3284 17 6 6.6382 -7.7952 2.2707 18 7 6.6229 -6.6200 1.3807 19 6 7.1885 -5.4035 1.6554 20 1 7.5501 -4.7820 0.8496 21 6 7.2969 -4.9692 2.9694 22 7 8.1082 -3.9774 3.2698 23 14 6.2914 -5.7927 4.3111 24 1 7.0080 -6.9992 4.7969 25 1 6.0985 -4.8445 5.4375 26 1 4.9683 -6.1889 3.7656 27 6 3.5820 -1.1987 -0.0006 28 6 2.1779 -1.1868 -0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6397 2.1381 -0.0004 33 1 4.0880 2.1700 0.0009 34 1 6.0182 -4.4425 -0.0004 35 1 4.1630 -6.3109 -0.9403 36 1 3.9842 -6.2594 0.8299 37 1 4.4435 -8.5200 0.6365 38 1 5.5817 -8.9644 -0.6774 39 1 7.4080 -9.2872 0.8638 40 1 6.0282 -9.8587 1.8607 41 1 7.5898 -7.8592 2.7983 42 1 5.8138 -7.7432 2.9820 43 1 8.1843 -3.6742 4.1880 44 1 1.6297 -2.1174 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028072213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:57 Heat of formation + Delta-G solvation = 22.281507 kcal Electronic energy + Delta-G solvation = -28028.947511 eV Core-core repulsion = 24265.298185 eV Total energy + Delta-G solvation = -3763.649326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68505 -40.39218 -39.40330 -38.11439 -35.55268 -34.67950 -33.55541 -31.87345 -31.83302 -31.03130 -28.02647 -27.58033 -26.40536 -25.27875 -23.88624 -22.71548 -22.11221 -21.46398 -20.88876 -19.55352 -19.13477 -18.29790 -17.50865 -17.28637 -17.03451 -16.62228 -16.54888 -16.26414 -15.44667 -15.41663 -15.23034 -15.02916 -14.93610 -14.63049 -14.46743 -14.23999 -14.07084 -13.45249 -13.13633 -13.05005 -13.00755 -12.83616 -12.79365 -12.72722 -12.57584 -12.33980 -12.26863 -12.07138 -11.83521 -11.71482 -11.66894 -11.33594 -10.97973 -10.82780 -10.75943 -10.02623 -9.95645 -8.95418 -8.88006 -8.20560 -5.53533 -0.72093 0.02681 0.31844 0.57985 0.69381 1.20071 1.30048 1.36716 1.97413 2.20576 2.35325 2.60113 3.09300 3.22427 3.26001 3.61939 3.82892 3.86954 3.96342 3.98536 4.14190 4.22231 4.28516 4.36921 4.38442 4.40703 4.60753 4.70543 4.73102 4.76890 4.85185 4.87404 4.98903 4.99977 5.01077 5.13140 5.15015 5.19324 5.25222 5.30409 5.45814 5.46874 5.56955 5.74374 5.86173 6.09043 6.52008 6.75391 7.08240 7.51513 8.12334 8.98493 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.003718 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.703197 B = 7529.564978 C = 8295.717662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.080 4.080 4 C -0.066 4.066 5 C -0.218 4.218 6 S 0.417 5.583 7 N -0.505 5.505 8 C 0.061 3.939 9 C 0.575 3.425 10 O -0.568 6.568 11 N -0.685 5.685 12 C 0.114 3.886 13 C 0.138 3.862 14 H 0.056 0.944 15 C -0.112 4.112 16 C -0.116 4.116 17 C 0.099 3.901 18 N -0.620 5.620 19 C -0.215 4.215 20 H 0.064 0.936 21 C -0.017 4.017 22 N -0.944 5.944 23 Si 0.933 3.067 24 H -0.269 1.269 25 H -0.317 1.317 26 H -0.280 1.280 27 C -0.108 4.108 28 C -0.073 4.073 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.179 0.821 33 H 0.170 0.830 34 H 0.415 0.585 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.038 0.962 42 H 0.011 0.989 43 H 0.258 0.742 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 6.829 -9.621 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.103 4.103 4 C -0.087 4.087 5 C -0.339 4.339 6 S 0.577 5.423 7 N -0.332 5.332 8 C -0.126 4.126 9 C 0.357 3.643 10 O -0.448 6.448 11 N -0.337 5.337 12 C -0.012 4.012 13 C 0.032 3.968 14 H 0.074 0.926 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.025 4.025 18 N -0.346 5.346 19 C -0.344 4.344 20 H 0.081 0.919 21 C -0.213 4.213 22 N -0.590 5.590 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.247 1.247 26 H -0.206 1.206 27 C -0.119 4.119 28 C -0.096 4.096 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.196 0.804 33 H 0.187 0.813 34 H 0.255 0.745 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.029 0.971 43 H 0.067 0.933 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.716 6.892 -9.490 15.887 hybrid contribution -1.164 -0.672 1.377 1.924 sum -11.881 6.220 -8.113 15.673 Atomic orbital electron populations 1.20904 0.88083 1.04314 1.03551 1.20051 0.98396 0.91988 0.97814 1.21434 0.93325 0.98853 0.96692 1.20439 0.94426 0.95204 0.98668 1.24585 1.01328 0.98263 1.09766 1.80998 1.02585 0.93075 1.65661 1.71309 1.24110 1.19099 1.18661 1.22000 0.87196 0.96065 1.07311 1.17481 0.85611 0.83998 0.77245 1.90648 1.17368 1.83379 1.53446 1.46202 1.10912 1.06353 1.70258 1.22075 0.98375 0.79828 1.00878 1.21612 0.90572 0.94653 0.89952 0.92613 1.22583 0.99450 0.91941 1.01007 1.22698 1.00310 0.95919 0.96475 1.22086 0.97809 0.88401 0.94223 1.45012 1.62981 1.08709 1.17868 1.18273 1.30256 0.93628 0.92209 0.91891 1.25655 0.99428 0.97024 0.99201 1.69881 1.38961 1.31223 1.18941 0.86111 0.80621 0.77281 0.79545 1.19510 1.24656 1.20621 1.19735 0.95818 0.90120 1.06196 1.20693 0.90251 0.99904 0.98712 0.90042 0.88433 0.91542 0.80357 0.81259 0.74476 0.89938 0.93761 0.90506 0.87380 0.90089 0.88600 0.94362 0.97091 0.93268 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.98 71.24 0.71 -0.91 16 2 C -0.08 -1.75 5.84 -20.15 -0.12 -1.87 16 3 C -0.08 -1.36 9.63 22.09 0.21 -1.15 16 4 C -0.07 -1.33 10.03 22.04 0.22 -1.11 16 5 C -0.22 -6.47 6.73 22.98 0.15 -6.31 16 6 S 0.42 13.56 23.36 -56.49 -1.32 12.24 16 7 N -0.50 -21.37 10.49 -64.53 -0.68 -22.05 16 8 C 0.06 2.60 6.82 43.86 0.30 2.89 16 9 C 0.57 25.92 7.81 86.65 0.68 26.59 16 10 O -0.57 -26.16 15.00 -4.08 -0.06 -26.22 16 11 N -0.69 -30.37 4.81 -466.41 -2.24 -32.61 16 12 C 0.11 4.39 5.26 86.38 0.45 4.84 16 13 C 0.14 5.07 3.41 45.35 0.15 5.22 16 14 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 15 C -0.11 -3.01 6.48 31.83 0.21 -2.81 16 16 C -0.12 -3.33 7.10 32.03 0.23 -3.10 16 17 C 0.10 4.11 4.79 86.85 0.42 4.52 16 18 N -0.62 -28.65 2.81 -668.27 -1.88 -30.53 16 19 C -0.21 -11.90 8.44 84.03 0.71 -11.19 16 20 H 0.06 3.79 6.79 -2.91 -0.02 3.77 16 21 C -0.02 -1.01 5.47 84.86 0.46 -0.54 16 22 N -0.94 -59.51 13.97 21.65 0.30 -59.21 16 23 Si 0.93 49.27 24.38 68.60 1.67 50.94 16 24 H -0.27 -13.30 6.87 99.48 0.68 -12.62 16 25 H -0.32 -17.27 7.11 99.48 0.71 -16.56 16 26 H -0.28 -14.84 6.66 99.48 0.66 -14.18 16 27 C -0.11 -3.89 6.10 -20.17 -0.12 -4.01 16 28 C -0.07 -2.27 9.17 22.36 0.21 -2.07 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.07 1.03 8.07 -2.39 -0.02 1.01 16 32 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.41 19.70 5.04 -92.71 -0.47 19.23 16 35 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.04 1.88 8.06 -2.39 -0.02 1.86 16 37 H 0.08 1.98 7.80 -2.38 -0.02 1.96 16 38 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.70 7.47 -2.39 -0.02 1.68 16 42 H 0.01 0.50 5.23 -2.38 -0.01 0.49 16 43 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.13 4.31 6.64 -2.91 -0.02 4.29 16 Total: -1.00 -77.10 364.93 1.17 -75.93 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.50 Total: 22.50 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.87 Total: 9.01 kcal Atomic # 7 Polarization: -139.91 SS G_CDS: -4.50 Total: -144.40 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.06 Total: -26.22 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 1.67 Total: 50.94 kcal Atomic # 16 Polarization: 13.56 SS G_CDS: -1.32 Total: 12.24 kcal Total: -77.10 1.17 -75.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028072213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.209 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds