Wall clock time and date at job start Wed Apr 1 2020 03:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28054 * 124.24566 * 2 1 4 4 C 1.34417 * 117.91830 * 179.77226 * 3 2 1 5 5 C 1.41244 * 129.48166 * 180.25059 * 4 3 2 6 6 C 1.35748 * 120.63702 * 180.23664 * 5 4 3 7 7 C 1.40200 * 120.61485 * 0.02562 * 6 5 4 8 8 C 1.47584 * 120.12884 * 179.97438 * 7 6 5 9 9 O 1.21591 * 120.00182 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99886 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99820 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46558 * 174.10329 * 11 10 8 13 13 H 1.09001 * 109.87697 * 56.78356 * 12 11 10 14 14 C 1.54326 * 109.87975 * 177.79922 * 12 11 10 15 15 C 1.55154 * 102.94611 * 141.60683 * 14 12 11 16 16 C 1.54914 * 101.58170 * 324.50301 * 15 14 12 17 17 N 1.47020 * 109.88613 * 295.60256 * 12 11 10 18 18 C 1.36939 * 125.64268 * 61.62754 * 17 12 11 19 19 H 1.08002 * 120.00124 * 324.03587 * 18 17 12 20 20 C 1.38813 * 120.00216 * 144.04599 * 18 17 12 21 21 N 1.31619 * 120.00433 * 162.24772 * 20 18 17 22 22 Si 1.86803 * 119.99535 * 342.25047 * 20 18 17 23 23 H 1.48493 * 109.47552 * 94.12573 * 22 20 18 24 24 H 1.48509 * 109.46937 * 214.12400 * 22 20 18 25 25 H 1.48500 * 109.47319 * 334.12218 * 22 20 18 26 26 C 1.39183 * 119.74317 * 0.06257 * 7 6 5 27 27 C 1.38907 * 119.84971 * 359.84572 * 26 7 6 28 28 S 1.70651 * 124.24096 * 180.29737 * 2 1 3 29 29 H 1.08998 * 109.46907 * 269.70532 * 1 2 3 30 30 H 1.08998 * 109.46746 * 149.70287 * 1 2 3 31 31 H 1.09002 * 109.47242 * 29.70445 * 1 2 3 32 32 H 1.08008 * 119.68408 * 0.25843 * 5 4 3 33 33 H 1.07999 * 119.69329 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99828 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.46844 * 294.09930 * 11 10 8 36 36 H 1.08998 * 109.47031 * 54.10460 * 11 10 8 37 37 H 1.08999 * 110.72096 * 259.97721 * 14 12 11 38 38 H 1.09003 * 110.72118 * 23.24758 * 14 12 11 39 39 H 1.09007 * 110.99908 * 82.56777 * 15 14 12 40 40 H 1.08991 * 111.01275 * 206.42320 * 15 14 12 41 41 H 1.08997 * 110.36470 * 155.84367 * 16 15 14 42 42 H 1.09000 * 110.36194 * 278.05477 * 16 15 14 43 43 H 0.96993 * 119.99790 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.07290 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0585 0.0000 4 6 3.5636 0.9104 0.0047 5 6 4.5763 1.8949 0.0106 6 6 5.8865 1.5397 0.0100 7 6 6.2598 0.1883 0.0029 8 6 7.6875 -0.1858 0.0017 9 8 8.0086 -1.3585 -0.0049 10 7 8.6352 0.7725 0.0069 11 6 10.0524 0.4011 0.0052 12 6 10.9094 1.6606 -0.1363 13 1 10.6742 2.3608 0.6653 14 6 12.4056 1.2860 -0.0838 15 6 13.0385 2.2346 -1.1359 16 6 11.9222 2.2992 -2.2079 17 7 10.6625 2.2894 -1.4421 18 6 9.4612 2.7837 -1.8754 19 1 8.5425 2.2855 -1.6033 20 6 9.4243 3.9251 -2.6646 21 7 8.3459 4.2067 -3.3647 22 14 10.9054 5.0615 -2.7330 23 1 11.7578 4.6946 -3.8923 24 1 10.4454 6.4657 -2.8816 25 1 11.6903 4.9277 -1.4795 26 6 5.2789 -0.7990 -0.0048 27 6 3.9369 -0.4404 -0.0023 28 16 2.4672 -1.4107 -0.0073 29 1 -0.3633 -0.0053 1.0276 30 1 -0.3633 -0.8873 -0.5184 31 1 -0.3634 0.8926 -0.5092 32 1 4.3057 2.9406 0.0160 33 1 6.6483 2.3052 0.0141 34 1 8.3790 1.7080 0.0118 35 1 10.2973 -0.1019 0.9406 36 1 10.2512 -0.2695 -0.8308 37 1 12.8170 1.4793 0.9069 38 1 12.5523 0.2436 -0.3668 39 1 13.2282 3.2197 -0.7096 40 1 13.9521 1.8066 -1.5484 41 1 12.0063 3.2180 -2.7882 42 1 11.9759 1.4306 -2.8642 43 1 8.3201 5.0044 -3.9158 44 1 5.5605 -1.8417 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028243077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:50 Heat of formation + Delta-G solvation = 51.045345 kcal Electronic energy + Delta-G solvation = -27390.534729 eV Core-core repulsion = 23628.132697 eV Total energy + Delta-G solvation = -3762.402033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.57419 -39.34173 -37.98398 -36.65894 -34.17104 -32.72102 -31.86576 -31.13379 -30.03494 -29.73900 -28.25109 -25.13705 -24.36793 -23.91202 -22.59095 -21.39686 -20.87484 -19.95796 -19.68304 -18.64280 -17.65344 -16.59437 -16.30952 -16.00925 -15.69051 -15.29160 -14.98593 -14.83303 -14.53282 -13.94733 -13.91215 -13.64625 -13.43953 -13.27558 -13.09486 -13.02799 -12.58837 -12.47344 -12.39620 -12.32400 -12.00306 -11.45033 -11.36876 -11.31420 -10.96397 -10.90353 -10.75592 -10.52472 -10.24112 -10.21894 -9.91293 -9.76482 -9.63628 -9.56237 -8.72936 -8.64654 -8.43159 -8.14135 -6.91322 -6.08817 -3.54311 0.12756 1.09446 1.18201 1.57776 1.99449 3.17749 3.25864 3.39880 3.44524 3.60110 3.72314 3.94165 4.43675 4.53710 4.81319 4.84462 4.98264 5.04325 5.08602 5.13813 5.16935 5.24964 5.28775 5.39449 5.45339 5.48249 5.60236 5.79273 5.83540 5.89569 6.02844 6.05340 6.08164 6.19070 6.22026 6.29470 6.31379 6.35590 6.54339 6.60439 6.79829 6.81321 6.95330 7.50310 7.79204 7.99959 8.21948 8.60616 8.71355 9.55287 10.14692 11.04950 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002907 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.689047 B = 9630.884317 C =11029.318026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.089 3.911 3 N -0.468 5.468 4 C 0.102 3.898 5 C -0.067 4.067 6 C -0.065 4.065 7 C -0.108 4.108 8 C 0.556 3.444 9 O -0.554 6.554 10 N -0.698 5.698 11 C 0.116 3.884 12 C 0.142 3.858 13 H 0.049 0.951 14 C -0.121 4.121 15 C -0.136 4.136 16 C 0.118 3.882 17 N -0.601 5.601 18 C -0.261 4.261 19 H 0.090 0.910 20 C 0.037 3.963 21 N -0.898 5.898 22 Si 0.889 3.111 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.268 1.268 26 C -0.012 4.012 27 C -0.194 4.194 28 S 0.098 5.902 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.412 0.588 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.265 0.735 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 -7.743 9.149 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.195 4.195 3 N -0.183 5.183 4 C -0.019 4.019 5 C -0.088 4.088 6 C -0.086 4.086 7 C -0.114 4.114 8 C 0.342 3.658 9 O -0.435 6.435 10 N -0.351 5.351 11 C -0.010 4.010 12 C 0.035 3.965 13 H 0.067 0.933 14 C -0.159 4.159 15 C -0.175 4.175 16 C -0.007 4.007 17 N -0.327 5.327 18 C -0.388 4.388 19 H 0.107 0.893 20 C -0.164 4.164 21 N -0.539 5.539 22 Si 0.721 3.279 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.193 1.193 26 C -0.035 4.035 27 C -0.312 4.312 28 S 0.353 5.647 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.253 0.747 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.698 -8.928 8.986 15.366 hybrid contribution 1.281 1.932 -0.404 2.353 sum -7.417 -6.996 8.582 13.327 Atomic orbital electron populations 1.20561 0.84844 1.04597 1.04200 1.26789 1.01797 0.90935 0.99956 1.66129 1.04287 1.31266 1.16596 1.19299 0.88990 0.91746 1.01825 1.20304 0.90112 0.98784 0.99563 1.21010 0.96429 0.95478 0.95724 1.19968 0.93597 0.93609 1.04268 1.17979 0.85094 0.85691 0.77021 1.90728 1.82968 1.18238 1.51524 1.46124 1.06370 1.10316 1.72267 1.21988 0.79769 0.98660 1.00584 1.21290 0.92374 0.92454 0.90376 0.93343 1.22485 0.94843 0.99571 0.99030 1.22782 0.97882 0.99452 0.97339 1.21888 0.86317 0.98780 0.93693 1.44672 1.06820 1.70435 1.10778 1.18629 0.83805 1.05500 1.30906 0.89313 1.25430 0.96374 0.96799 0.97836 1.69809 1.28842 1.27126 1.28118 0.86713 0.83134 0.79799 0.78287 1.21559 1.23184 1.19318 1.20350 0.88108 1.00324 0.94739 1.23652 0.98619 0.96590 1.12349 1.83842 0.95708 1.10520 1.74597 0.89183 0.89742 0.88914 0.84024 0.83555 0.74741 0.92619 0.91433 0.91361 0.91217 0.91587 0.91528 0.94094 0.95086 0.92506 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.44 36.01 0.38 -0.20 16 2 C 0.09 1.03 7.29 -13.85 -0.10 0.93 16 3 N -0.47 -6.85 10.56 -8.96 -0.09 -6.95 16 4 C 0.10 1.59 7.00 -84.88 -0.59 1.00 16 5 C -0.07 -1.02 10.03 -39.33 -0.39 -1.41 16 6 C -0.06 -1.03 9.44 -39.74 -0.38 -1.40 16 7 C -0.11 -1.81 5.87 -105.00 -0.62 -2.42 16 8 C 0.56 10.39 7.76 -12.45 -0.10 10.29 16 9 O -0.55 -11.59 16.32 5.29 0.09 -11.51 16 10 N -0.70 -12.68 4.31 -61.33 -0.26 -12.94 16 11 C 0.12 2.03 5.15 -4.04 -0.02 2.01 16 12 C 0.14 2.53 3.30 -66.95 -0.22 2.31 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.12 -1.77 6.48 -24.90 -0.16 -1.93 16 15 C -0.14 -2.19 7.09 -24.58 -0.17 -2.36 16 16 C 0.12 2.40 6.24 -2.53 -0.02 2.39 16 17 N -0.60 -13.19 2.67 -162.57 -0.43 -13.62 16 18 C -0.26 -6.62 9.50 -15.06 -0.14 -6.76 16 19 H 0.09 2.30 5.54 -52.49 -0.29 2.01 16 20 C 0.04 1.00 5.45 -17.43 -0.10 0.91 16 21 N -0.90 -25.86 13.97 55.49 0.78 -25.08 16 22 Si 0.89 21.46 24.83 -169.99 -4.22 17.23 16 23 H -0.29 -6.93 6.81 56.52 0.39 -6.55 16 24 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.27 -6.24 7.06 56.52 0.40 -5.84 16 26 C -0.01 -0.19 9.62 -38.98 -0.37 -0.56 16 27 C -0.19 -2.88 6.54 -38.62 -0.25 -3.14 16 28 S 0.10 1.12 23.11 -107.50 -2.48 -1.36 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.94 8.06 -52.48 -0.42 1.51 16 33 H 0.15 2.25 6.38 -52.49 -0.33 1.92 16 34 H 0.41 7.47 4.33 -40.82 -0.18 7.30 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.92 3.22 -51.93 -0.17 0.75 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.14 2.13 7.64 -52.48 -0.40 1.73 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -32.01 366.68 -9.95 -41.96 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.58 Total: 7.10 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -3.26 Total: -0.35 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.02 Total: -58.60 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.22 Total: 17.23 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.48 Total: -1.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.01 -9.95 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028243077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.007 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds