Wall clock time and date at job start Wed Apr 1 2020 03:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28054 * 124.24566 * 2 1 4 4 C 1.34417 * 117.91830 * 179.77226 * 3 2 1 5 5 C 1.41244 * 129.48166 * 180.25059 * 4 3 2 6 6 C 1.35748 * 120.63702 * 180.23664 * 5 4 3 7 7 C 1.40200 * 120.61485 * 0.02562 * 6 5 4 8 8 C 1.47584 * 120.12884 * 179.97438 * 7 6 5 9 9 O 1.21591 * 120.00182 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99886 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99820 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46558 * 174.10329 * 11 10 8 13 13 H 1.09001 * 109.87697 * 56.78356 * 12 11 10 14 14 C 1.54326 * 109.87975 * 177.79922 * 12 11 10 15 15 C 1.55154 * 102.94611 * 141.60683 * 14 12 11 16 16 C 1.54914 * 101.58170 * 324.50301 * 15 14 12 17 17 N 1.47020 * 109.88613 * 295.60256 * 12 11 10 18 18 C 1.36939 * 125.64268 * 61.62754 * 17 12 11 19 19 H 1.08002 * 120.00124 * 324.03587 * 18 17 12 20 20 C 1.38813 * 120.00216 * 144.04599 * 18 17 12 21 21 N 1.31619 * 120.00433 * 162.24772 * 20 18 17 22 22 Si 1.86803 * 119.99535 * 342.25047 * 20 18 17 23 23 H 1.48493 * 109.47552 * 94.12573 * 22 20 18 24 24 H 1.48509 * 109.46937 * 214.12400 * 22 20 18 25 25 H 1.48500 * 109.47319 * 334.12218 * 22 20 18 26 26 C 1.39183 * 119.74317 * 0.06257 * 7 6 5 27 27 C 1.38907 * 119.84971 * 359.84572 * 26 7 6 28 28 S 1.70651 * 124.24096 * 180.29737 * 2 1 3 29 29 H 1.08998 * 109.46907 * 269.70532 * 1 2 3 30 30 H 1.08998 * 109.46746 * 149.70287 * 1 2 3 31 31 H 1.09002 * 109.47242 * 29.70445 * 1 2 3 32 32 H 1.08008 * 119.68408 * 0.25843 * 5 4 3 33 33 H 1.07999 * 119.69329 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99828 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.46844 * 294.09930 * 11 10 8 36 36 H 1.08998 * 109.47031 * 54.10460 * 11 10 8 37 37 H 1.08999 * 110.72096 * 259.97721 * 14 12 11 38 38 H 1.09003 * 110.72118 * 23.24758 * 14 12 11 39 39 H 1.09007 * 110.99908 * 82.56777 * 15 14 12 40 40 H 1.08991 * 111.01275 * 206.42320 * 15 14 12 41 41 H 1.08997 * 110.36470 * 155.84367 * 16 15 14 42 42 H 1.09000 * 110.36194 * 278.05477 * 16 15 14 43 43 H 0.96993 * 119.99790 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.07290 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0585 0.0000 4 6 3.5636 0.9104 0.0047 5 6 4.5763 1.8949 0.0106 6 6 5.8865 1.5397 0.0100 7 6 6.2598 0.1883 0.0029 8 6 7.6875 -0.1858 0.0017 9 8 8.0086 -1.3585 -0.0049 10 7 8.6352 0.7725 0.0069 11 6 10.0524 0.4011 0.0052 12 6 10.9094 1.6606 -0.1363 13 1 10.6742 2.3608 0.6653 14 6 12.4056 1.2860 -0.0838 15 6 13.0385 2.2346 -1.1359 16 6 11.9222 2.2992 -2.2079 17 7 10.6625 2.2894 -1.4421 18 6 9.4612 2.7837 -1.8754 19 1 8.5425 2.2855 -1.6033 20 6 9.4243 3.9251 -2.6646 21 7 8.3459 4.2067 -3.3647 22 14 10.9054 5.0615 -2.7330 23 1 11.7578 4.6946 -3.8923 24 1 10.4454 6.4657 -2.8816 25 1 11.6903 4.9277 -1.4795 26 6 5.2789 -0.7990 -0.0048 27 6 3.9369 -0.4404 -0.0023 28 16 2.4672 -1.4107 -0.0073 29 1 -0.3633 -0.0053 1.0276 30 1 -0.3633 -0.8873 -0.5184 31 1 -0.3634 0.8926 -0.5092 32 1 4.3057 2.9406 0.0160 33 1 6.6483 2.3052 0.0141 34 1 8.3790 1.7080 0.0118 35 1 10.2973 -0.1019 0.9406 36 1 10.2512 -0.2695 -0.8308 37 1 12.8170 1.4793 0.9069 38 1 12.5523 0.2436 -0.3668 39 1 13.2282 3.2197 -0.7096 40 1 13.9521 1.8066 -1.5484 41 1 12.0063 3.2180 -2.7882 42 1 11.9759 1.4306 -2.8642 43 1 8.3201 5.0044 -3.9158 44 1 5.5605 -1.8417 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028243077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:49 Heat of formation + Delta-G solvation = 30.810715 kcal Electronic energy + Delta-G solvation = -27391.412169 eV Core-core repulsion = 23628.132697 eV Total energy + Delta-G solvation = -3763.279472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76591 -40.70953 -39.45592 -37.85215 -35.65107 -34.61912 -32.83292 -32.33126 -31.75849 -31.04627 -29.36584 -26.63993 -25.76993 -25.26189 -23.90426 -22.60279 -22.17779 -21.41223 -21.05738 -19.88355 -19.09535 -18.14865 -17.90952 -17.36788 -16.89167 -16.52830 -16.26554 -16.24814 -15.95351 -15.32207 -15.17412 -15.08361 -14.83915 -14.39300 -14.28621 -14.19574 -14.02013 -13.82878 -13.70331 -13.50167 -13.11004 -13.04134 -12.93650 -12.65914 -12.43261 -12.25746 -12.08488 -12.00528 -11.72521 -11.50920 -11.37387 -11.32705 -11.08018 -10.76757 -10.65545 -10.06903 -9.71320 -9.24274 -8.73551 -8.14612 -5.55454 -0.99867 -0.02025 0.08932 0.55450 0.84563 1.32194 1.41843 1.52563 1.86447 2.21782 2.45757 2.64244 2.78215 3.07271 3.37107 3.42253 3.62562 3.83990 3.92676 3.97430 4.01257 4.03823 4.13512 4.25084 4.34782 4.49567 4.57019 4.65352 4.66349 4.69381 4.75065 4.84399 4.87869 4.97911 5.01107 5.02107 5.08691 5.13984 5.15810 5.32538 5.40493 5.49136 5.52315 5.90637 6.22464 6.47539 6.52103 6.84143 7.14151 7.57552 8.24154 9.02425 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002907 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.689047 B = 9630.884317 C =11029.318026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.099 3.901 3 N -0.504 5.504 4 C 0.097 3.903 5 C -0.078 4.078 6 C -0.066 4.066 7 C -0.131 4.131 8 C 0.555 3.445 9 O -0.582 6.582 10 N -0.700 5.700 11 C 0.119 3.881 12 C 0.138 3.862 13 H 0.054 0.946 14 C -0.110 4.110 15 C -0.126 4.126 16 C 0.104 3.896 17 N -0.618 5.618 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.019 4.019 21 N -0.946 5.946 22 Si 0.944 3.056 23 H -0.291 1.291 24 H -0.316 1.316 25 H -0.252 1.252 26 C -0.008 4.008 27 C -0.221 4.221 28 S 0.153 5.847 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.411 0.589 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.021 0.979 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 -8.962 10.707 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.185 4.185 3 N -0.219 5.219 4 C -0.024 4.024 5 C -0.099 4.099 6 C -0.088 4.088 7 C -0.137 4.137 8 C 0.343 3.657 9 O -0.465 6.465 10 N -0.351 5.351 11 C -0.006 4.006 12 C 0.032 3.968 13 H 0.072 0.928 14 C -0.148 4.148 15 C -0.164 4.164 16 C -0.020 4.020 17 N -0.344 5.344 18 C -0.370 4.370 19 H 0.093 0.907 20 C -0.216 4.216 21 N -0.591 5.591 22 Si 0.775 3.225 23 H -0.219 1.219 24 H -0.245 1.245 25 H -0.176 1.176 26 C -0.031 4.031 27 C -0.340 4.340 28 S 0.409 5.591 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.603 -10.174 10.578 17.013 hybrid contribution 1.075 2.144 -0.865 2.550 sum -7.528 -8.030 9.713 14.680 Atomic orbital electron populations 1.20859 0.81376 1.06105 1.06066 1.27729 1.03736 0.90438 0.96554 1.66230 1.03768 1.32668 1.19253 1.19522 0.89805 0.92059 1.01045 1.20425 0.90020 0.99490 0.99930 1.20938 0.96704 0.95055 0.96058 1.19862 0.92829 0.94331 1.06725 1.18247 0.85911 0.85306 0.76284 1.90692 1.83541 1.19132 1.53110 1.46189 1.06813 1.10183 1.71942 1.21990 0.79402 0.98354 1.00881 1.21521 0.94976 0.92018 0.88261 0.92840 1.22521 0.91770 0.99988 1.00530 1.22752 0.97409 1.00191 0.96038 1.22056 0.87336 0.97562 0.95025 1.44852 1.06313 1.70251 1.12990 1.18745 0.85049 1.04413 1.28759 0.90714 1.25982 0.98432 0.98551 0.98643 1.69932 1.31046 1.27829 1.30245 0.85823 0.80593 0.77380 0.78682 1.21872 1.24524 1.17598 1.20400 0.88509 1.00169 0.94022 1.23934 0.99666 0.97606 1.12752 1.83641 0.92984 1.09087 1.73352 0.86908 0.87069 0.88496 0.83142 0.83984 0.74886 0.90234 0.93517 0.87976 0.89865 0.91590 0.88378 0.96078 0.95478 0.93078 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.44 71.24 0.74 -0.15 16 2 C 0.10 2.07 7.29 88.66 0.65 2.71 16 3 N -0.50 -14.32 10.56 -182.20 -1.92 -16.24 16 4 C 0.10 3.05 7.00 39.95 0.28 3.33 16 5 C -0.08 -2.47 10.03 22.43 0.23 -2.25 16 6 C -0.07 -2.20 9.44 22.17 0.21 -1.99 16 7 C -0.13 -4.58 5.87 -20.11 -0.12 -4.70 16 8 C 0.55 21.39 7.76 86.71 0.67 22.06 16 9 O -0.58 -24.87 16.32 -4.00 -0.07 -24.94 16 10 N -0.70 -25.93 4.31 -466.21 -2.01 -27.94 16 11 C 0.12 4.08 5.15 86.38 0.44 4.52 16 12 C 0.14 4.68 3.30 45.34 0.15 4.83 16 13 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 14 C -0.11 -2.80 6.48 31.78 0.21 -2.59 16 15 C -0.13 -3.59 7.09 31.99 0.23 -3.37 16 16 C 0.10 4.13 6.24 86.86 0.54 4.67 16 17 N -0.62 -26.77 2.67 -668.26 -1.79 -28.55 16 18 C -0.24 -12.45 9.50 84.03 0.80 -11.65 16 19 H 0.08 4.03 5.54 -2.91 -0.02 4.01 16 20 C -0.02 -1.07 5.45 84.86 0.46 -0.61 16 21 N -0.95 -56.69 13.97 21.65 0.30 -56.39 16 22 Si 0.94 45.15 24.83 68.60 1.70 46.85 16 23 H -0.29 -13.83 6.81 99.48 0.68 -13.15 16 24 H -0.32 -15.56 7.11 99.48 0.71 -14.85 16 25 H -0.25 -11.17 7.06 99.48 0.70 -10.47 16 26 C -0.01 -0.26 9.62 22.66 0.22 -0.04 16 27 C -0.22 -6.54 6.54 22.89 0.15 -6.39 16 28 S 0.15 3.21 23.11 -56.49 -1.31 1.90 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.14 4.72 6.38 -2.91 -0.02 4.70 16 34 H 0.41 15.43 4.33 -92.71 -0.40 15.03 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.94 7.85 -2.39 -0.02 1.92 16 39 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.02 0.93 3.22 -2.39 -0.01 0.92 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.15 4.44 7.64 -2.91 -0.02 4.42 16 Total: -1.00 -71.76 366.68 1.39 -70.37 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.61 Total: 26.55 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.86 Total: 8.39 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -5.42 Total: -129.12 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.07 Total: -24.94 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.70 Total: 46.85 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.31 Total: 1.90 kcal Total: -71.76 1.39 -70.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028243077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.184 kcal (2) G-P(sol) polarization free energy of solvation -71.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds