Wall clock time and date at job start Wed Apr 1 2020 03:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28055 * 124.23873 * 2 1 4 4 C 1.34412 * 117.91719 * 179.97438 * 3 2 1 5 5 C 1.41245 * 129.48796 * 180.02562 * 4 3 2 6 6 C 1.35747 * 120.64011 * 179.79666 * 5 4 3 7 7 C 1.40196 * 120.61306 * 0.44246 * 6 5 4 8 8 C 1.47595 * 120.12620 * 179.80090 * 7 6 5 9 9 O 1.21583 * 119.99816 * 179.72232 * 8 7 6 10 10 N 1.34772 * 119.99723 * 359.71777 * 8 7 6 11 11 C 1.46504 * 119.99676 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46991 * 184.66328 * 11 10 8 13 13 H 1.08997 * 110.00037 * 54.40463 * 12 11 10 14 14 C 1.54328 * 109.88253 * 293.30821 * 12 11 10 15 15 C 1.55271 * 103.00829 * 218.46742 * 14 12 11 16 16 C 1.54911 * 101.52965 * 35.36431 * 15 14 12 17 17 N 1.47023 * 109.88399 * 175.50576 * 12 11 10 18 18 C 1.36945 * 125.64364 * 298.33764 * 17 12 11 19 19 H 1.07999 * 119.99844 * 346.28822 * 18 17 12 20 20 C 1.38813 * 119.99936 * 166.29408 * 18 17 12 21 21 N 1.31621 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47134 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47333 * 119.99770 * 22 20 18 25 25 H 1.48501 * 109.47286 * 240.00278 * 22 20 18 26 26 C 1.39176 * 119.74866 * 359.52158 * 7 6 5 27 27 C 1.38919 * 119.84648 * 0.25470 * 26 7 6 28 28 S 1.70646 * 124.24123 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47282 * 89.97677 * 1 2 3 30 30 H 1.09004 * 109.47059 * 209.97355 * 1 2 3 31 31 H 1.09004 * 109.47558 * 329.97310 * 1 2 3 32 32 H 1.08005 * 119.67900 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.69581 * 180.21896 * 6 5 4 34 34 H 0.97005 * 120.00401 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47103 * 64.66430 * 11 10 8 36 36 H 1.08998 * 109.47218 * 304.66198 * 11 10 8 37 37 H 1.08998 * 110.71926 * 336.75461 * 14 12 11 38 38 H 1.09000 * 110.71633 * 100.02768 * 14 12 11 39 39 H 1.09002 * 110.96391 * 277.33660 * 15 14 12 40 40 H 1.09005 * 111.09857 * 153.45022 * 15 14 12 41 41 H 1.08998 * 110.36709 * 204.23305 * 16 15 14 42 42 H 1.09001 * 110.36536 * 82.01625 * 16 15 14 43 43 H 0.97000 * 119.99954 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.08125 * 180.23434 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5634 0.9106 0.0005 5 6 4.5762 1.8952 0.0011 6 6 5.8863 1.5400 0.0058 7 6 6.2597 0.1886 0.0007 8 6 7.6875 -0.1854 0.0014 9 8 8.0086 -1.3581 0.0021 10 7 8.6351 0.7729 0.0011 11 6 10.0523 0.4016 0.0012 12 6 10.9100 1.6631 0.1181 13 1 10.6083 2.2393 0.9928 14 6 10.7563 2.5221 -1.1547 15 6 12.1935 3.0617 -1.3879 16 6 13.0543 1.8598 -0.9252 17 7 12.3291 1.2946 0.2272 18 6 12.8853 0.5500 1.2330 19 1 12.3291 0.3676 2.1406 20 6 14.1638 0.0299 1.0860 21 7 14.8414 0.2520 -0.0204 22 14 14.9227 -0.9852 2.4582 23 1 13.9634 -1.0872 3.5871 24 1 15.2382 -2.3450 1.9517 25 1 16.1701 -0.3298 2.9270 26 6 5.2789 -0.7988 0.0009 27 6 3.9368 -0.4402 0.0008 28 16 2.4672 -1.4107 0.0006 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 4.3056 2.9408 0.0008 33 1 6.6482 2.3054 0.0098 34 1 8.3788 1.7085 0.0009 35 1 10.2923 -0.1162 -0.9275 36 1 10.2556 -0.2557 0.8466 37 1 10.4349 1.9094 -1.9970 38 1 10.0587 3.3421 -0.9846 39 1 12.3851 3.9399 -0.7712 40 1 12.3639 3.2816 -2.4418 41 1 14.0451 2.1975 -0.6214 42 1 13.1340 1.1210 -1.7226 43 1 15.7347 -0.1118 -0.1233 44 1 5.5605 -1.8414 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028243079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:53 Heat of formation + Delta-G solvation = 21.540298 kcal Electronic energy + Delta-G solvation = -26557.728483 eV Core-core repulsion = 22794.047015 eV Total energy + Delta-G solvation = -3763.681468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.77419 -40.71543 -39.30793 -37.85867 -35.89712 -34.42575 -32.82756 -32.32163 -31.44479 -30.63755 -29.22829 -26.74505 -25.85470 -25.29850 -23.89980 -22.51293 -21.99622 -21.38349 -21.17224 -19.85136 -18.97342 -18.39482 -17.57154 -17.02045 -16.86871 -16.47749 -16.27950 -16.14519 -15.98551 -15.66986 -15.09300 -14.96244 -14.68218 -14.38033 -14.23287 -14.04182 -13.92783 -13.67747 -13.57120 -13.41798 -13.11346 -13.02563 -12.86540 -12.70716 -12.45938 -12.01241 -11.98973 -11.87593 -11.68806 -11.46579 -11.38418 -11.31643 -11.19376 -10.77638 -10.69912 -10.22109 -9.74252 -9.26237 -8.86519 -7.89091 -5.26255 -1.00121 -0.00358 0.08810 0.57743 0.82978 1.42829 1.45021 1.54176 1.85483 2.02887 2.48461 2.63802 2.78932 3.30228 3.43918 3.52830 3.77299 3.86547 3.95285 3.97786 4.00568 4.04794 4.24843 4.30386 4.44402 4.55510 4.58873 4.65608 4.68993 4.74460 4.86836 4.95358 5.00239 5.02891 5.07694 5.14119 5.16148 5.21173 5.31826 5.46102 5.48063 5.56641 5.68100 5.79723 6.23074 6.46222 6.48961 7.08792 7.14103 7.76155 8.41130 9.21543 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.002107 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.734728 B =13286.912272 C =14207.870439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.101 3.899 3 N -0.499 5.499 4 C 0.095 3.905 5 C -0.071 4.071 6 C -0.063 4.063 7 C -0.127 4.127 8 C 0.553 3.447 9 O -0.586 6.586 10 N -0.696 5.696 11 C 0.128 3.872 12 C 0.147 3.853 13 H 0.054 0.946 14 C -0.115 4.115 15 C -0.133 4.133 16 C 0.172 3.828 17 N -0.611 5.611 18 C -0.237 4.237 19 H 0.076 0.924 20 C -0.061 4.061 21 N -0.945 5.945 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.296 1.296 25 H -0.288 1.288 26 C -0.015 4.015 27 C -0.221 4.221 28 S 0.132 5.868 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.417 0.583 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.037 0.963 42 H -0.009 1.009 43 H 0.247 0.753 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.457 5.843 -2.146 31.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.182 4.182 3 N -0.214 5.214 4 C -0.027 4.027 5 C -0.091 4.091 6 C -0.084 4.084 7 C -0.134 4.134 8 C 0.341 3.659 9 O -0.468 6.468 10 N -0.348 5.348 11 C 0.002 3.998 12 C 0.040 3.960 13 H 0.072 0.928 14 C -0.153 4.153 15 C -0.172 4.172 16 C 0.047 3.953 17 N -0.335 5.335 18 C -0.366 4.366 19 H 0.094 0.906 20 C -0.255 4.255 21 N -0.593 5.593 22 Si 0.799 3.201 23 H -0.193 1.193 24 H -0.223 1.223 25 H -0.215 1.215 26 C -0.038 4.038 27 C -0.340 4.340 28 S 0.389 5.611 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.185 0.815 33 H 0.190 0.810 34 H 0.255 0.745 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.009 0.991 43 H 0.057 0.943 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -30.575 4.379 -2.089 30.958 hybrid contribution 1.799 -0.249 0.593 1.911 sum -28.776 4.129 -1.496 29.109 Atomic orbital electron populations 1.20845 0.81654 1.06104 1.05940 1.27651 1.03588 0.90337 0.96644 1.66259 1.03913 1.32171 1.19046 1.19746 0.89965 0.92023 1.00979 1.20585 0.89619 0.99705 0.99200 1.21094 0.97025 0.94327 0.95954 1.19741 0.91325 0.95147 1.07186 1.18495 0.86206 0.85177 0.75978 1.90783 1.83664 1.20235 1.52086 1.45705 1.05524 1.10129 1.73474 1.21774 0.78976 0.99312 0.99782 1.21369 0.84074 0.92447 0.98119 0.92815 1.22672 0.97528 0.99231 0.95842 1.22889 0.95466 0.97515 1.01294 1.21297 0.94823 0.91603 0.87620 1.44757 1.02658 1.60930 1.25155 1.19330 0.98475 1.23967 0.94826 0.90585 1.25663 0.98719 1.01543 0.99585 1.70145 1.12137 1.49837 1.27205 0.85129 0.78195 0.77933 0.78833 1.19254 1.22281 1.21497 1.20398 0.88913 1.00222 0.94237 1.23895 0.99142 0.97845 1.13074 1.83958 0.94020 1.09879 1.73218 0.87200 0.87431 0.88142 0.81469 0.80972 0.74458 0.94235 0.94513 0.91425 0.87197 0.91066 0.89887 0.94470 0.99118 0.94340 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.44 71.24 0.74 0.25 16 2 C 0.10 1.52 7.29 88.66 0.65 2.16 16 3 N -0.50 -9.99 10.56 -182.20 -1.92 -11.92 16 4 C 0.09 2.02 7.00 39.95 0.28 2.30 16 5 C -0.07 -1.19 10.03 22.43 0.23 -0.96 16 6 C -0.06 -1.05 9.44 22.17 0.21 -0.84 16 7 C -0.13 -3.10 5.87 -20.11 -0.12 -3.22 16 8 C 0.55 17.43 7.76 86.71 0.67 18.10 16 9 O -0.59 -24.32 16.33 -3.98 -0.06 -24.39 16 10 N -0.70 -19.46 5.35 -466.22 -2.50 -21.96 16 11 C 0.13 4.85 5.09 86.38 0.44 5.29 16 12 C 0.15 5.44 3.22 45.34 0.15 5.58 16 13 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 14 C -0.12 -3.25 6.07 31.82 0.19 -3.06 16 15 C -0.13 -4.42 7.10 32.03 0.23 -4.19 16 16 C 0.17 8.22 5.42 86.86 0.47 8.69 16 17 N -0.61 -30.25 3.13 -668.26 -2.09 -32.34 16 18 C -0.24 -13.18 9.73 84.03 0.82 -12.36 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.06 -3.53 5.47 84.86 0.46 -3.07 16 21 N -0.94 -57.10 10.54 21.65 0.23 -56.87 16 22 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 C -0.01 -0.37 9.62 22.66 0.22 -0.15 16 27 C -0.22 -4.93 6.54 22.90 0.15 -4.78 16 28 S 0.13 2.17 23.11 -56.49 -1.31 0.87 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.17 1.64 6.38 -2.91 -0.02 1.62 16 34 H 0.42 7.89 6.26 -92.70 -0.58 7.31 16 35 H 0.04 1.69 8.03 -2.39 -0.02 1.67 16 36 H 0.04 1.66 7.86 -2.39 -0.02 1.64 16 37 H 0.07 1.91 7.78 -2.39 -0.02 1.89 16 38 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.04 2.02 6.86 -2.39 -0.02 2.01 16 42 H -0.01 -0.50 8.08 -2.39 -0.02 -0.52 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.13 3.54 7.64 -2.91 -0.02 3.52 16 Total: -1.00 -78.61 376.08 0.62 -77.99 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.45 Total: 10.07 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.79 Total: 9.74 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -6.28 Total: -123.08 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.39 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.31 Total: 0.87 kcal Total: -78.61 0.62 -77.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028243079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.533 kcal (2) G-P(sol) polarization free energy of solvation -78.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds