Wall clock time and date at job start Wed Apr 1 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38903 * 119.48161 * 2 1 4 4 C 1.36808 * 120.30189 * 180.02562 * 3 2 1 5 5 C 1.38693 * 119.63248 * 359.97438 * 4 3 2 6 6 S 1.76251 * 134.18816 * 179.97438 * 5 4 3 7 7 N 1.55993 * 97.56353 * 179.81696 * 6 5 4 8 8 C 1.29688 * 111.74154 * 0.34064 * 7 6 5 9 9 C 1.47387 * 121.82552 * 179.87234 * 8 7 6 10 10 O 1.21619 * 119.99491 * 185.61820 * 9 8 7 11 11 N 1.34768 * 120.00202 * 5.62796 * 9 8 7 12 12 C 1.46495 * 120.00265 * 5.24544 * 11 9 8 13 13 C 1.46502 * 119.99964 * 185.25034 * 11 9 8 14 14 H 1.08999 * 110.88530 * 356.12002 * 13 11 9 15 15 C 1.55161 * 111.00258 * 119.99570 * 13 11 9 16 16 C 1.54326 * 102.93947 * 82.57541 * 15 13 11 17 17 N 1.47022 * 107.27459 * 22.19069 * 16 15 13 18 18 C 1.36931 * 125.64955 * 181.02049 * 17 16 15 19 19 H 1.07998 * 120.00090 * 185.80843 * 18 17 16 20 20 C 1.38812 * 119.99699 * 5.81238 * 18 17 16 21 21 N 1.31612 * 120.00359 * 7.04852 * 20 18 17 22 22 Si 1.86805 * 119.99697 * 187.32467 * 20 18 17 23 23 H 1.48495 * 109.47079 * 264.73966 * 22 20 18 24 24 H 1.48506 * 109.46962 * 24.73920 * 22 20 18 25 25 H 1.48500 * 109.47346 * 144.73715 * 22 20 18 26 26 C 1.47426 * 108.69958 * 1.28793 * 17 16 15 27 27 C 1.40674 * 120.66296 * 0.02562 * 5 4 3 28 28 C 1.36336 * 119.47932 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47078 * 89.99649 * 1 2 3 30 30 H 1.08998 * 109.46780 * 210.00515 * 1 2 3 31 31 H 1.09002 * 109.46478 * 329.99535 * 1 2 3 32 32 H 1.08000 * 119.84743 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.17892 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47835 * 275.53048 * 12 11 9 35 35 H 1.09000 * 109.47235 * 35.53519 * 12 11 9 36 36 H 1.09004 * 109.47408 * 155.52526 * 12 11 9 37 37 H 1.08994 * 110.72373 * 324.21105 * 15 13 11 38 38 H 1.09002 * 110.87479 * 201.00596 * 15 13 11 39 39 H 1.08999 * 109.88180 * 262.77082 * 16 15 13 40 40 H 1.09002 * 110.00950 * 141.68356 * 16 15 13 41 41 H 0.97007 * 120.00293 * 180.27537 * 21 20 18 42 42 H 1.09005 * 110.36591 * 94.48126 * 26 17 16 43 43 H 1.08998 * 110.36470 * 216.80559 * 26 17 16 44 44 H 1.07999 * 120.01683 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1907 1.2092 0.0000 4 6 3.5586 1.2288 -0.0005 5 6 4.2616 0.0332 -0.0005 6 16 5.9737 -0.3853 -0.0017 7 7 5.8060 -1.9362 0.0041 8 6 4.5567 -2.2843 0.0001 9 6 4.1441 -3.6993 0.0014 10 8 2.9680 -3.9898 -0.1055 11 7 5.0701 -4.6711 0.1214 12 6 6.4716 -4.3214 0.3656 13 6 4.6752 -6.0773 0.0075 14 1 3.5949 -6.1696 -0.1048 15 6 5.4175 -6.7701 -1.1657 16 6 6.7786 -7.1430 -0.5413 17 7 6.5914 -7.1932 0.9160 18 6 7.5661 -7.4709 1.8368 19 1 7.3088 -7.5764 2.8804 20 6 8.8848 -7.6168 1.4289 21 7 9.2218 -7.3528 0.1843 22 14 10.1799 -8.1954 2.6445 23 1 10.8691 -7.0182 3.2311 24 1 9.5291 -8.9778 3.7260 25 1 11.1708 -9.0502 1.9427 26 6 5.1789 -6.9014 1.2214 27 6 3.5821 -1.1986 -0.0005 28 6 2.1780 -1.1868 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3632 0.8900 0.5139 32 1 1.6398 2.1381 0.0004 33 1 4.0881 2.1701 -0.0001 34 1 6.9625 -4.1039 -0.5829 35 1 6.5201 -3.4434 1.0096 36 1 6.9751 -5.1569 0.8521 37 1 5.5514 -6.0800 -1.9986 38 1 4.8839 -7.6638 -1.4892 39 1 7.5219 -6.3867 -0.7938 40 1 7.1025 -8.1173 -0.9073 41 1 10.1427 -7.4586 -0.1018 42 1 4.6119 -7.8276 1.3156 43 1 5.1022 -6.3138 2.1363 44 1 1.6298 -2.1174 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033327252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:13 Heat of formation + Delta-G solvation = 54.011902 kcal Electronic energy + Delta-G solvation = -28016.278998 eV Core-core repulsion = 24254.005605 eV Total energy + Delta-G solvation = -3762.273393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.93763 -40.64676 -39.09460 -38.17242 -35.87100 -34.07273 -33.47878 -31.84434 -31.21044 -29.60447 -27.97875 -27.92402 -27.08106 -25.87480 -24.18670 -22.66708 -21.98750 -21.58394 -20.27809 -19.66013 -18.92581 -18.32647 -17.52110 -17.07663 -16.91505 -16.67346 -16.30471 -15.76234 -15.64512 -15.50678 -15.22039 -14.87008 -14.65331 -14.45652 -14.21954 -13.88121 -13.56192 -13.44222 -13.25610 -13.11396 -12.98592 -12.90155 -12.77975 -12.76181 -12.54018 -12.37740 -12.14911 -12.01520 -11.87328 -11.79194 -11.71819 -11.58378 -10.80752 -10.75601 -10.72376 -9.95892 -9.77439 -8.90505 -8.79295 -7.81954 -5.20561 -0.76957 0.02782 0.30639 0.55914 0.67004 1.47021 1.47944 1.56883 1.85447 1.91051 2.49462 2.59730 3.16120 3.34579 3.38049 3.62075 3.79258 3.85143 3.93130 3.98356 4.22605 4.26906 4.35975 4.37890 4.44575 4.61004 4.66922 4.73833 4.74447 4.81988 4.86127 4.89019 4.94258 5.00206 5.01775 5.14717 5.19843 5.27402 5.30886 5.44805 5.53081 5.60568 5.61326 5.80030 5.86111 6.19762 6.28634 6.90582 7.09671 7.75243 8.39881 9.24826 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003004 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.303106 B = 9319.915967 C =10262.423820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.081 4.081 4 C -0.067 4.067 5 C -0.214 4.214 6 S 0.408 5.592 7 N -0.496 5.496 8 C 0.065 3.935 9 C 0.579 3.421 10 O -0.557 6.557 11 N -0.571 5.571 12 C 0.091 3.909 13 C 0.130 3.870 14 H 0.117 0.883 15 C -0.139 4.139 16 C 0.179 3.821 17 N -0.613 5.613 18 C -0.240 4.240 19 H 0.079 0.921 20 C -0.055 4.055 21 N -0.941 5.941 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.272 1.272 25 H -0.296 1.296 26 C 0.126 3.874 27 C -0.105 4.105 28 C -0.072 4.072 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.175 0.825 33 H 0.168 0.832 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.039 0.961 40 H -0.002 1.002 41 H 0.247 0.753 42 H 0.050 0.950 43 H 0.040 0.960 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.237 20.895 -1.918 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.104 4.104 4 C -0.088 4.088 5 C -0.335 4.335 6 S 0.569 5.431 7 N -0.324 5.324 8 C -0.121 4.121 9 C 0.363 3.637 10 O -0.436 6.436 11 N -0.300 5.300 12 C -0.053 4.053 13 C 0.026 3.974 14 H 0.135 0.865 15 C -0.178 4.178 16 C 0.054 3.946 17 N -0.340 5.340 18 C -0.369 4.369 19 H 0.097 0.903 20 C -0.249 4.249 21 N -0.589 5.589 22 Si 0.800 3.200 23 H -0.214 1.214 24 H -0.197 1.197 25 H -0.222 1.222 26 C 0.000 4.000 27 C -0.115 4.115 28 C -0.095 4.095 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.193 0.807 33 H 0.186 0.814 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.294 20.840 -1.956 24.796 hybrid contribution -0.259 -1.445 0.404 1.523 sum -13.553 19.395 -1.552 23.712 Atomic orbital electron populations 1.20913 0.88335 1.04166 1.03633 1.20035 0.98277 0.92107 0.97758 1.21426 0.93486 0.98813 0.96645 1.20422 0.94338 0.95393 0.98679 1.24502 1.01345 0.98080 1.09591 1.81206 1.02537 0.93859 1.65500 1.71979 1.23546 1.17853 1.19023 1.21807 0.87269 0.95450 1.07559 1.17561 0.85157 0.83761 0.77192 1.90685 1.17208 1.82956 1.52782 1.47639 1.09073 1.05726 1.67607 1.22164 0.80002 1.02289 1.00819 1.22308 0.99929 0.78964 0.96203 0.86545 1.23098 0.97253 1.00471 0.96951 1.21053 0.93077 0.97711 0.82754 1.44745 1.04443 1.82269 1.02555 1.19302 0.87073 1.40864 0.89675 0.90349 1.25513 0.98769 1.02474 0.98180 1.70148 1.17101 1.54787 1.16881 0.85172 0.78981 0.77624 0.78173 1.21446 1.19741 1.22231 1.22055 0.85841 0.96441 0.95651 1.19659 0.95643 0.90032 1.06146 1.20689 0.90408 0.99814 0.98539 0.89805 0.91622 0.88796 0.80735 0.81407 0.94094 0.90789 0.88779 0.91297 0.88977 0.94255 0.98375 0.94394 0.93277 0.94186 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.98 71.24 0.71 -0.54 16 2 C -0.08 -1.37 5.84 -20.15 -0.12 -1.49 16 3 C -0.08 -1.01 9.63 22.09 0.21 -0.80 16 4 C -0.07 -0.99 10.03 22.04 0.22 -0.77 16 5 C -0.21 -4.88 6.73 22.97 0.15 -4.72 16 6 S 0.41 9.74 23.36 -56.49 -1.32 8.43 16 7 N -0.50 -16.14 7.25 -64.57 -0.47 -16.61 16 8 C 0.07 2.22 6.61 43.86 0.29 2.51 16 9 C 0.58 21.93 7.65 86.65 0.66 22.60 16 10 O -0.56 -21.90 14.43 -4.09 -0.06 -21.96 16 11 N -0.57 -22.33 2.91 -818.33 -2.38 -24.71 16 12 C 0.09 3.79 7.53 127.77 0.96 4.75 16 13 C 0.13 4.95 3.67 46.46 0.17 5.12 16 14 H 0.12 4.14 7.02 -2.39 -0.02 4.12 16 15 C -0.14 -5.33 6.48 31.79 0.21 -5.13 16 16 C 0.18 8.71 4.39 86.73 0.38 9.09 16 17 N -0.61 -30.69 1.86 -691.55 -1.29 -31.98 16 18 C -0.24 -13.14 9.79 84.03 0.82 -12.31 16 19 H 0.08 4.16 7.84 -2.91 -0.02 4.14 16 20 C -0.06 -3.08 5.45 84.86 0.46 -2.61 16 21 N -0.94 -54.98 10.45 21.65 0.23 -54.75 16 22 Si 0.97 45.33 29.56 68.60 2.03 47.36 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 C 0.13 5.27 6.47 86.93 0.56 5.83 16 27 C -0.10 -3.01 6.10 -20.17 -0.12 -3.14 16 28 C -0.07 -1.82 9.18 22.35 0.21 -1.62 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.81 8.07 -2.39 -0.02 0.79 16 31 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 35 H 0.07 2.95 5.82 -2.39 -0.01 2.94 16 36 H 0.09 4.60 4.39 -2.39 -0.01 4.59 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.04 2.14 5.94 -2.39 -0.01 2.13 16 40 H 0.00 -0.11 7.96 -2.39 -0.02 -0.13 16 41 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 42 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.13 3.62 6.66 -2.91 -0.02 3.60 16 Total: -1.00 -68.42 361.60 3.55 -64.87 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.03 Total: 12.59 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.78 Total: 16.77 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -3.91 Total: -128.05 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 9.74 SS G_CDS: -1.32 Total: 8.43 kcal Total: -68.42 3.55 -64.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033327252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.885 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds