Wall clock time and date at job start Wed Apr 1 2020 03:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28059 * 124.24377 * 2 1 4 4 C 1.34412 * 117.91578 * 179.97438 * 3 2 1 5 5 C 1.41246 * 129.47921 * 179.97438 * 4 3 2 6 6 C 1.35749 * 120.63146 * 179.97438 * 5 4 3 7 7 C 1.40192 * 120.61891 * 0.04375 * 6 5 4 8 8 C 1.47588 * 120.12787 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99968 * 202.11751 * 8 7 6 10 10 N 1.34773 * 120.00264 * 22.10761 * 8 7 6 11 11 C 1.46505 * 119.99857 * 4.80595 * 10 8 7 12 12 C 1.46505 * 120.00013 * 184.80710 * 10 8 7 13 13 H 1.08992 * 110.88575 * 356.11566 * 12 10 8 14 14 C 1.55150 * 111.00396 * 120.00263 * 12 10 8 15 15 C 1.54326 * 102.94635 * 82.57134 * 14 12 10 16 16 N 1.47026 * 107.27101 * 22.18940 * 15 14 12 17 17 C 1.36935 * 125.64923 * 181.02283 * 16 15 14 18 18 H 1.07993 * 119.99835 * 185.92676 * 17 16 15 19 19 C 1.38810 * 120.00100 * 5.93466 * 17 16 15 20 20 N 1.31626 * 119.99554 * 7.46540 * 19 17 16 21 21 Si 1.86792 * 120.00010 * 187.73929 * 19 17 16 22 22 H 1.48493 * 109.47494 * 264.73681 * 21 19 17 23 23 H 1.48498 * 109.47115 * 24.74119 * 21 19 17 24 24 H 1.48504 * 109.47136 * 144.73746 * 21 19 17 25 25 C 1.47428 * 108.69891 * 1.28794 * 16 15 14 26 26 C 1.39184 * 119.74597 * 0.23084 * 7 6 5 27 27 C 1.38912 * 119.84246 * 359.47424 * 26 7 6 28 28 S 1.70649 * 124.23854 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47074 * 90.02392 * 1 2 3 30 30 H 1.08996 * 109.47208 * 210.02701 * 1 2 3 31 31 H 1.08999 * 109.46951 * 330.02612 * 1 2 3 32 32 H 1.07997 * 119.68696 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.69061 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.46612 * 264.17126 * 11 10 8 35 35 H 1.08994 * 109.46920 * 24.17148 * 11 10 8 36 36 H 1.09001 * 109.46449 * 144.17294 * 11 10 8 37 37 H 1.08997 * 110.71936 * 324.20475 * 14 12 10 38 38 H 1.09005 * 110.87258 * 201.00538 * 14 12 10 39 39 H 1.09002 * 109.88142 * 262.77889 * 15 14 12 40 40 H 1.08999 * 109.88754 * 141.60802 * 15 14 12 41 41 H 0.97001 * 119.99464 * 180.28043 * 20 19 17 42 42 H 1.09006 * 110.36243 * 94.48541 * 25 16 15 43 43 H 1.08999 * 110.36575 * 216.79765 * 25 16 15 44 44 H 1.08000 * 120.07356 * 179.72505 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2277 1.0586 0.0000 4 6 3.5636 0.9105 0.0005 5 6 4.5763 1.8950 0.0002 6 6 5.8865 1.5397 0.0014 7 6 6.2598 0.1884 0.0020 8 6 7.6875 -0.1858 0.0028 9 8 8.0284 -1.2837 -0.3931 10 7 8.6133 0.6896 0.4420 11 6 8.1956 1.9709 1.0165 12 6 10.0375 0.3598 0.3451 13 1 10.1770 -0.6505 -0.0393 14 6 10.7901 1.3967 -0.5299 15 6 11.0650 2.5490 0.4591 16 7 11.0111 1.9829 1.8149 17 6 11.1826 2.6826 2.9794 18 1 11.2196 2.1593 3.9233 19 6 11.3088 4.0646 2.9465 20 7 11.1176 4.7162 1.8190 21 14 11.7574 4.9987 4.5006 22 1 10.5196 5.4877 5.1591 23 1 12.4877 4.0966 5.4270 24 1 12.6220 6.1545 4.1514 25 6 10.7481 0.5358 1.7127 26 6 5.2789 -0.7990 -0.0034 27 6 3.9369 -0.4403 0.0017 28 16 2.4672 -1.4108 0.0006 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.3058 2.9406 -0.0011 33 1 6.6484 2.3051 0.0015 34 1 8.2278 2.7419 0.2467 35 1 7.1792 1.8829 1.4003 36 1 8.8690 2.2411 1.8299 37 1 10.1607 1.7363 -1.3525 38 1 11.7245 0.9811 -0.9073 39 1 10.3036 3.3213 0.3494 40 1 12.0528 2.9702 0.2723 41 1 11.2097 5.6815 1.7951 42 1 11.6844 -0.0221 1.7309 43 1 10.0961 0.2106 2.5233 44 1 5.5605 -1.8417 -0.0073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033558036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:12 Heat of formation + Delta-G solvation = 83.160492 kcal Electronic energy + Delta-G solvation = -27708.905423 eV Core-core repulsion = 23947.896007 eV Total energy + Delta-G solvation = -3761.009415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.90747 -39.77608 -37.69667 -36.80367 -34.47403 -32.53078 -31.67948 -31.33092 -29.51430 -28.69063 -27.70267 -26.37943 -24.64919 -24.11740 -23.32413 -21.34445 -20.83323 -20.12829 -19.18946 -18.34917 -17.54360 -16.97494 -16.35327 -15.72953 -15.59708 -15.39385 -14.92057 -14.70034 -14.44698 -14.13569 -13.91240 -13.71183 -13.53308 -13.41587 -13.08548 -12.85943 -12.68996 -12.38566 -12.12499 -12.00554 -11.72816 -11.63372 -11.31715 -11.05940 -10.90990 -10.83261 -10.73135 -10.40452 -10.25673 -10.17254 -9.99808 -9.91266 -9.75224 -9.51846 -8.78340 -8.77162 -8.38672 -8.17946 -6.86902 -5.79311 -3.16177 -0.03246 0.94255 0.98138 1.42938 1.83511 2.96037 3.24141 3.34431 3.41764 3.42753 3.57420 3.66325 4.36746 4.42802 4.53986 4.65945 4.91191 4.96343 5.02125 5.07947 5.23221 5.32611 5.40084 5.43587 5.48345 5.61659 5.64138 5.65328 5.82927 5.86749 5.97029 6.00552 6.11438 6.16879 6.29367 6.41850 6.46709 6.49728 6.58684 6.77036 7.01995 7.34342 7.41235 7.57021 7.71999 7.74491 8.16390 8.35113 9.12015 9.72158 10.37503 11.29075 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002714 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.763815 B =10313.677040 C =11357.394228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 N -0.471 5.471 4 C 0.103 3.897 5 C -0.075 4.075 6 C -0.093 4.093 7 C -0.108 4.108 8 C 0.555 3.445 9 O -0.550 6.550 10 N -0.577 5.577 11 C 0.047 3.953 12 C 0.123 3.877 13 H 0.101 0.899 14 C -0.155 4.155 15 C 0.167 3.833 16 N -0.602 5.602 17 C -0.232 4.232 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.916 5.916 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.282 1.282 24 H -0.290 1.290 25 C 0.125 3.875 26 C -0.011 4.011 27 C -0.196 4.196 28 S 0.103 5.897 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.253 0.747 42 H 0.033 0.967 43 H 0.045 0.955 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.214 -8.931 -5.419 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.193 4.193 3 N -0.185 5.185 4 C -0.018 4.018 5 C -0.096 4.096 6 C -0.113 4.113 7 C -0.115 4.115 8 C 0.343 3.657 9 O -0.430 6.430 10 N -0.307 5.307 11 C -0.095 4.095 12 C 0.019 3.981 13 H 0.119 0.881 14 C -0.194 4.194 15 C 0.042 3.958 16 N -0.329 5.329 17 C -0.360 4.360 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.217 1.217 25 C -0.002 4.002 26 C -0.034 4.034 27 C -0.314 4.314 28 S 0.358 5.642 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.186 0.814 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.546 -9.805 -5.542 21.698 hybrid contribution 0.930 1.388 0.784 1.846 sum -17.615 -8.417 -4.758 20.094 Atomic orbital electron populations 1.20577 0.84754 1.04635 1.04331 1.26824 1.01870 0.90959 0.99644 1.66151 1.04242 1.31277 1.16836 1.19348 0.89044 0.91782 1.01646 1.20366 0.90143 0.98710 1.00366 1.21996 0.96985 0.96569 0.95773 1.19894 0.93463 0.93700 1.04460 1.18092 0.85003 0.84392 0.78187 1.90745 1.81699 1.21518 1.48991 1.47562 1.06018 1.18186 1.58922 1.22851 1.01938 0.83570 1.01095 1.22322 0.78644 0.99196 0.97941 0.88108 1.23237 0.99226 0.98345 0.98598 1.21337 1.00666 0.91967 0.81796 1.44583 1.84012 1.01691 1.02566 1.19016 1.43259 0.88857 0.84845 0.90514 1.24773 1.01943 0.96199 0.97178 1.69946 1.54805 1.07167 1.24428 0.86150 0.78018 0.79575 0.82296 1.21613 1.20725 1.21674 1.21952 0.96380 0.87810 0.94084 1.20357 0.88157 1.00212 0.94640 1.23670 0.98646 0.96672 1.12439 1.83918 0.95568 1.10383 1.74289 0.89081 0.89669 0.88881 0.84114 0.81412 0.91999 0.91048 0.86044 0.91831 0.91350 0.91356 0.95364 0.93705 0.94920 0.93665 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.44 36.01 0.38 -0.09 16 2 C 0.09 0.91 7.29 -13.85 -0.10 0.81 16 3 N -0.47 -6.02 10.56 -8.96 -0.09 -6.12 16 4 C 0.10 1.39 7.00 -84.88 -0.59 0.79 16 5 C -0.07 -0.94 10.03 -39.33 -0.39 -1.34 16 6 C -0.09 -1.21 7.45 -39.74 -0.30 -1.50 16 7 C -0.11 -1.59 5.56 -105.00 -0.58 -2.17 16 8 C 0.55 9.44 7.52 -12.45 -0.09 9.34 16 9 O -0.55 -10.63 15.93 5.28 0.08 -10.54 16 10 N -0.58 -9.86 2.91 -172.55 -0.50 -10.37 16 11 C 0.05 0.78 6.90 59.85 0.41 1.20 16 12 C 0.12 2.20 3.67 -65.66 -0.24 1.96 16 13 H 0.10 1.79 7.02 -51.93 -0.36 1.42 16 14 C -0.15 -2.79 6.48 -24.90 -0.16 -2.95 16 15 C 0.17 3.71 4.44 -3.06 -0.01 3.69 16 16 N -0.60 -13.99 1.89 -169.93 -0.32 -14.31 16 17 C -0.23 -5.97 9.78 -15.06 -0.15 -6.11 16 18 H 0.08 1.95 7.84 -52.49 -0.41 1.54 16 19 C 0.00 -0.11 5.45 -17.43 -0.09 -0.20 16 20 N -0.92 -24.79 10.46 55.49 0.58 -24.21 16 21 Si 0.91 21.04 29.56 -169.99 -5.02 16.02 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.12 2.47 6.39 -2.41 -0.02 2.46 16 26 C -0.01 -0.14 9.61 -38.98 -0.37 -0.52 16 27 C -0.20 -2.55 6.54 -38.62 -0.25 -2.80 16 28 S 0.10 1.02 23.11 -107.50 -2.48 -1.46 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.17 2.08 4.15 -52.49 -0.22 1.86 16 34 H 0.06 1.00 6.64 -51.93 -0.34 0.65 16 35 H 0.07 1.04 4.93 -51.93 -0.26 0.78 16 36 H 0.12 2.49 5.14 -51.93 -0.27 2.22 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.64 5.70 -51.93 -0.30 1.34 16 40 H 0.03 0.70 7.98 -51.93 -0.41 0.29 16 41 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.14 1.86 7.79 -52.49 -0.41 1.46 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -30.32 360.83 -10.40 -40.72 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.50 Total: 2.29 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.57 Total: 2.56 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.34 Total: -55.01 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.48 Total: -1.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.32 -10.40 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033558036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.877 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds