Wall clock time and date at job start Wed Apr 1 2020 03:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28059 * 124.24377 * 2 1 4 4 C 1.34412 * 117.91578 * 179.97438 * 3 2 1 5 5 C 1.41246 * 129.47921 * 179.97438 * 4 3 2 6 6 C 1.35749 * 120.63146 * 179.97438 * 5 4 3 7 7 C 1.40192 * 120.61891 * 0.04375 * 6 5 4 8 8 C 1.47588 * 120.12787 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99968 * 202.11751 * 8 7 6 10 10 N 1.34773 * 120.00264 * 22.10761 * 8 7 6 11 11 C 1.46505 * 119.99857 * 4.80595 * 10 8 7 12 12 C 1.46505 * 120.00013 * 184.80710 * 10 8 7 13 13 H 1.08992 * 110.88575 * 356.11566 * 12 10 8 14 14 C 1.55150 * 111.00396 * 120.00263 * 12 10 8 15 15 C 1.54326 * 102.94635 * 82.57134 * 14 12 10 16 16 N 1.47026 * 107.27101 * 22.18940 * 15 14 12 17 17 C 1.36935 * 125.64923 * 181.02283 * 16 15 14 18 18 H 1.07993 * 119.99835 * 185.92676 * 17 16 15 19 19 C 1.38810 * 120.00100 * 5.93466 * 17 16 15 20 20 N 1.31626 * 119.99554 * 7.46540 * 19 17 16 21 21 Si 1.86792 * 120.00010 * 187.73929 * 19 17 16 22 22 H 1.48493 * 109.47494 * 264.73681 * 21 19 17 23 23 H 1.48498 * 109.47115 * 24.74119 * 21 19 17 24 24 H 1.48504 * 109.47136 * 144.73746 * 21 19 17 25 25 C 1.47428 * 108.69891 * 1.28794 * 16 15 14 26 26 C 1.39184 * 119.74597 * 0.23084 * 7 6 5 27 27 C 1.38912 * 119.84246 * 359.47424 * 26 7 6 28 28 S 1.70649 * 124.23854 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47074 * 90.02392 * 1 2 3 30 30 H 1.08996 * 109.47208 * 210.02701 * 1 2 3 31 31 H 1.08999 * 109.46951 * 330.02612 * 1 2 3 32 32 H 1.07997 * 119.68696 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.69061 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.46612 * 264.17126 * 11 10 8 35 35 H 1.08994 * 109.46920 * 24.17148 * 11 10 8 36 36 H 1.09001 * 109.46449 * 144.17294 * 11 10 8 37 37 H 1.08997 * 110.71936 * 324.20475 * 14 12 10 38 38 H 1.09005 * 110.87258 * 201.00538 * 14 12 10 39 39 H 1.09002 * 109.88142 * 262.77889 * 15 14 12 40 40 H 1.08999 * 109.88754 * 141.60802 * 15 14 12 41 41 H 0.97001 * 119.99464 * 180.28043 * 20 19 17 42 42 H 1.09006 * 110.36243 * 94.48541 * 25 16 15 43 43 H 1.08999 * 110.36575 * 216.79765 * 25 16 15 44 44 H 1.08000 * 120.07356 * 179.72505 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2277 1.0586 0.0000 4 6 3.5636 0.9105 0.0005 5 6 4.5763 1.8950 0.0002 6 6 5.8865 1.5397 0.0014 7 6 6.2598 0.1884 0.0020 8 6 7.6875 -0.1858 0.0028 9 8 8.0284 -1.2837 -0.3931 10 7 8.6133 0.6896 0.4420 11 6 8.1956 1.9709 1.0165 12 6 10.0375 0.3598 0.3451 13 1 10.1770 -0.6505 -0.0393 14 6 10.7901 1.3967 -0.5299 15 6 11.0650 2.5490 0.4591 16 7 11.0111 1.9829 1.8149 17 6 11.1826 2.6826 2.9794 18 1 11.2196 2.1593 3.9233 19 6 11.3088 4.0646 2.9465 20 7 11.1176 4.7162 1.8190 21 14 11.7574 4.9987 4.5006 22 1 10.5196 5.4877 5.1591 23 1 12.4877 4.0966 5.4270 24 1 12.6220 6.1545 4.1514 25 6 10.7481 0.5358 1.7127 26 6 5.2789 -0.7990 -0.0034 27 6 3.9369 -0.4403 0.0017 28 16 2.4672 -1.4108 0.0006 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.3058 2.9406 -0.0011 33 1 6.6484 2.3051 0.0015 34 1 8.2278 2.7419 0.2467 35 1 7.1792 1.8829 1.4003 36 1 8.8690 2.2411 1.8299 37 1 10.1607 1.7363 -1.3525 38 1 11.7245 0.9811 -0.9073 39 1 10.3036 3.3213 0.3494 40 1 12.0528 2.9702 0.2723 41 1 11.2097 5.6815 1.7951 42 1 11.6844 -0.0221 1.7309 43 1 10.0961 0.2106 2.5233 44 1 5.5605 -1.8417 -0.0073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033558036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:11 Heat of formation + Delta-G solvation = 66.786174 kcal Electronic energy + Delta-G solvation = -27709.615466 eV Core-core repulsion = 23947.896007 eV Total energy + Delta-G solvation = -3761.719459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.01374 -40.97282 -39.16993 -37.90987 -35.99333 -34.17797 -32.64202 -32.36729 -31.15890 -29.88936 -29.05014 -27.82529 -26.34976 -25.13081 -24.48242 -22.38290 -21.98074 -21.91251 -20.49337 -19.35683 -18.92918 -18.61771 -17.68997 -16.88375 -16.70246 -16.62751 -16.26954 -16.09833 -15.83488 -15.58588 -15.08112 -15.03353 -14.54229 -14.39674 -14.04915 -13.97642 -13.85508 -13.75396 -13.48360 -13.36984 -13.15148 -12.89553 -12.73895 -12.69514 -12.37665 -12.28310 -12.09306 -11.98060 -11.81309 -11.76295 -11.55064 -11.27281 -10.91417 -10.76183 -10.70335 -9.82381 -9.67718 -9.22413 -8.75702 -7.78659 -5.16225 -0.98397 -0.01519 0.09734 0.57045 0.84726 1.49350 1.51536 1.59085 1.78199 1.92312 2.52291 2.57719 2.79755 3.31385 3.38682 3.45402 3.67353 3.84585 3.89262 3.97163 3.99100 4.06464 4.20269 4.30516 4.39403 4.56600 4.62979 4.64369 4.65784 4.67894 4.72896 4.83843 4.90020 4.94126 4.98774 5.05370 5.09441 5.14321 5.27874 5.41977 5.49664 5.59377 5.66227 5.85228 6.24369 6.36853 6.48145 7.00120 7.14456 7.79563 8.44356 9.27790 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002714 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.763815 B =10313.677040 C =11357.394228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.099 3.901 3 N -0.503 5.503 4 C 0.096 3.904 5 C -0.079 4.079 6 C -0.089 4.089 7 C -0.129 4.129 8 C 0.559 3.441 9 O -0.576 6.576 10 N -0.579 5.579 11 C 0.060 3.940 12 C 0.132 3.868 13 H 0.110 0.890 14 C -0.140 4.140 15 C 0.178 3.822 16 N -0.613 5.613 17 C -0.238 4.238 18 H 0.076 0.924 19 C -0.051 4.051 20 N -0.938 5.938 21 Si 0.967 3.033 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.298 1.298 25 C 0.125 3.875 26 C -0.008 4.008 27 C -0.221 4.221 28 S 0.145 5.855 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.048 0.952 40 H -0.006 1.006 41 H 0.247 0.753 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.559 -9.930 -5.527 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.184 4.184 3 N -0.218 5.218 4 C -0.025 4.025 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.135 4.135 8 C 0.349 3.651 9 O -0.458 6.458 10 N -0.309 5.309 11 C -0.082 4.082 12 C 0.028 3.972 13 H 0.127 0.873 14 C -0.179 4.179 15 C 0.053 3.947 16 N -0.340 5.340 17 C -0.367 4.367 18 H 0.094 0.906 19 C -0.246 4.246 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.213 1.213 23 H -0.202 1.202 24 H -0.224 1.224 25 C -0.001 4.001 26 C -0.031 4.031 27 C -0.340 4.340 28 S 0.402 5.598 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.175 0.825 33 H 0.189 0.811 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.012 0.988 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.904 -10.840 -5.644 24.215 hybrid contribution 1.477 1.594 0.818 2.322 sum -19.427 -9.245 -4.825 22.049 Atomic orbital electron populations 1.20847 0.81603 1.06097 1.05946 1.27678 1.03647 0.90463 0.96636 1.66248 1.03915 1.32485 1.19178 1.19638 0.89809 0.92137 1.00964 1.20544 0.89815 0.99558 1.00027 1.21928 0.97362 0.95872 0.95794 1.19722 0.92126 0.94685 1.06977 1.18375 0.85799 0.83718 0.77213 1.90721 1.82295 1.22529 1.50210 1.47573 1.05787 1.18390 1.59107 1.22709 1.02061 0.83464 0.99958 1.22191 0.79112 0.99466 0.96472 0.87263 1.23110 1.00337 0.96669 0.97791 1.21094 0.97973 0.93077 0.82538 1.44713 1.83863 1.03067 1.02330 1.19256 1.42372 0.89281 0.85770 0.90621 1.25416 1.02607 0.96984 0.99564 1.70115 1.55872 1.06787 1.25830 0.85243 0.77503 0.78064 0.79554 1.21313 1.20185 1.22432 1.22034 0.96867 0.85992 0.95215 1.20378 0.88548 1.00051 0.94138 1.23908 0.99460 0.97643 1.12978 1.83775 0.93427 1.09339 1.73277 0.87165 0.87196 0.88384 0.82527 0.81101 0.91640 0.88946 0.89659 0.90536 0.89695 0.93373 0.98820 0.94370 0.94064 0.94054 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.44 71.24 0.74 0.08 16 2 C 0.10 1.72 7.29 88.66 0.65 2.37 16 3 N -0.50 -11.96 10.56 -182.20 -1.92 -13.88 16 4 C 0.10 2.47 7.00 39.95 0.28 2.75 16 5 C -0.08 -1.90 10.03 22.43 0.23 -1.68 16 6 C -0.09 -2.26 7.45 22.17 0.17 -2.09 16 7 C -0.13 -3.71 5.56 -20.11 -0.11 -3.82 16 8 C 0.56 18.78 7.52 86.71 0.65 19.44 16 9 O -0.58 -22.03 15.93 -4.02 -0.06 -22.09 16 10 N -0.58 -19.62 2.91 -818.09 -2.38 -22.00 16 11 C 0.06 2.00 6.90 127.77 0.88 2.88 16 12 C 0.13 4.65 3.67 46.46 0.17 4.82 16 13 H 0.11 3.74 7.02 -2.39 -0.02 3.73 16 14 C -0.14 -4.96 6.48 31.78 0.21 -4.76 16 15 C 0.18 8.07 4.44 86.73 0.39 8.45 16 16 N -0.61 -28.95 1.89 -691.53 -1.31 -30.26 16 17 C -0.24 -12.43 9.78 84.03 0.82 -11.61 16 18 H 0.08 3.88 7.84 -2.91 -0.02 3.86 16 19 C -0.05 -2.73 5.45 84.86 0.46 -2.27 16 20 N -0.94 -51.97 10.46 21.65 0.23 -51.75 16 21 Si 0.97 43.76 29.56 68.60 2.03 45.78 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 C 0.12 4.95 6.39 86.93 0.56 5.51 16 26 C -0.01 -0.22 9.61 22.66 0.22 0.00 16 27 C -0.22 -5.49 6.54 22.89 0.15 -5.34 16 28 S 0.15 2.56 23.11 -56.49 -1.31 1.25 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.17 4.15 4.15 -2.91 -0.01 4.13 16 34 H 0.07 2.12 6.64 -2.39 -0.02 2.11 16 35 H 0.09 2.67 4.93 -2.39 -0.01 2.66 16 36 H 0.08 3.56 5.14 -2.39 -0.01 3.55 16 37 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 39 H 0.05 2.38 5.70 -2.39 -0.01 2.36 16 40 H -0.01 -0.33 7.98 -2.39 -0.02 -0.35 16 41 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 42 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.14 3.69 7.79 -2.91 -0.02 3.67 16 Total: -1.00 -65.91 360.83 2.76 -63.15 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.04 Total: 15.08 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.45 Total: 14.72 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -5.39 Total: -117.89 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.06 Total: -22.09 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.31 Total: 1.25 kcal Total: -65.91 2.76 -63.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033558036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.934 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds