Wall clock time and date at job start Wed Apr 1 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46756 * 239.99732 * 3 2 1 6 6 H 1.48501 * 109.46873 * 119.99928 * 3 2 1 7 7 C 1.38817 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99506 * 150.03143 * 7 2 1 9 9 N 1.36929 * 120.00059 * 330.03635 * 7 2 1 10 10 C 1.44580 * 118.64288 * 325.31304 * 9 7 2 11 11 C 1.54868 * 109.60245 * 270.70770 * 10 9 7 12 12 C 1.47092 * 110.32051 * 288.73369 * 11 10 9 13 13 C 1.52570 * 114.32633 * 62.79962 * 12 11 10 14 14 C 1.50878 * 109.35827 * 274.98606 * 13 12 11 15 15 H 1.08994 * 109.36788 * 331.69382 * 14 13 12 16 16 N 1.46497 * 109.36749 * 212.07765 * 14 13 12 17 17 C 1.34775 * 120.00320 * 155.00399 * 16 14 13 18 18 O 1.21612 * 119.99964 * 359.97438 * 17 16 14 19 19 C 1.47368 * 120.00504 * 180.02562 * 17 16 14 20 20 C 1.38772 * 120.54966 * 359.72144 * 19 17 16 21 21 N 1.31900 * 121.11869 * 179.75527 * 20 19 17 22 22 C 1.31672 * 122.22007 * 0.49459 * 21 20 19 23 23 C 1.39288 * 121.13716 * 359.78435 * 22 21 20 24 24 S 1.75882 * 131.39495 * 180.02562 * 23 22 21 25 25 C 1.75556 * 91.52551 * 179.97438 * 24 23 22 26 26 C 1.32473 * 110.78974 * 359.97438 * 25 24 23 27 27 C 1.40010 * 115.78411 * 0.02562 * 26 25 24 28 28 C 1.47596 * 118.64723 * 145.04985 * 9 7 2 29 29 H 0.97003 * 119.99901 * 175.11384 * 1 2 3 30 30 H 1.09001 * 109.45147 * 30.74501 * 10 9 7 31 31 H 1.09006 * 109.45113 * 150.69621 * 10 9 7 32 32 H 1.08991 * 109.32910 * 48.99169 * 11 10 9 33 33 H 1.09002 * 109.33131 * 168.64536 * 11 10 9 34 34 H 1.09000 * 108.51405 * 184.05446 * 12 11 10 35 35 H 1.09006 * 108.51208 * 301.70154 * 12 11 10 36 36 H 1.08995 * 109.49157 * 34.95682 * 13 12 11 37 37 H 1.08997 * 109.48990 * 155.01938 * 13 12 11 38 38 H 0.97003 * 120.00214 * 335.00232 * 16 14 13 39 39 H 1.08001 * 119.43859 * 359.97438 * 20 19 17 40 40 H 1.08005 * 119.42955 * 179.75728 * 22 21 20 41 41 H 1.07996 * 124.60005 * 180.02562 * 25 24 23 42 42 H 1.08008 * 122.10654 * 180.02562 * 26 25 24 43 43 H 1.09007 * 108.94966 * 258.57380 * 28 9 7 44 44 H 1.09000 * 108.94673 * 17.19669 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9819 -1.2648 -0.4666 9 7 1.4629 -2.3085 0.5933 10 6 0.6550 -2.1312 1.7791 11 6 1.5572 -2.1926 3.0364 12 6 2.0263 -3.5684 3.2618 13 6 2.9003 -4.1257 2.1423 14 6 2.0203 -4.7027 1.0610 15 1 1.0840 -5.0453 1.5015 16 7 2.7026 -5.8369 0.4331 17 6 1.9849 -6.8047 -0.1708 18 8 0.7709 -6.7368 -0.1941 19 6 2.6711 -7.9460 -0.8020 20 6 4.0561 -8.0327 -0.7863 21 7 4.6816 -9.0515 -1.3435 22 6 4.0354 -10.0270 -1.9472 23 6 2.6445 -10.0311 -2.0227 24 16 1.5225 -11.1745 -2.7488 25 6 0.1436 -10.2064 -2.2556 26 6 0.5386 -9.1238 -1.6023 27 6 1.9222 -8.9783 -1.4453 28 6 1.7172 -3.6322 -0.0080 29 1 -0.4850 -0.8370 -0.0716 30 1 0.1564 -1.1629 1.7372 31 1 -0.0928 -2.9227 1.8305 32 1 2.4164 -1.5369 2.8962 33 1 0.9884 -1.8612 3.9052 34 1 2.5967 -3.5918 4.1904 35 1 1.1571 -4.2164 3.3746 36 1 3.5115 -3.3254 1.7253 37 1 3.5469 -4.9075 2.5407 38 1 3.6709 -5.8914 0.4519 39 1 4.6312 -7.2546 -0.3066 40 1 4.5934 -10.8378 -2.3919 41 1 -0.8868 -10.4596 -2.4567 42 1 -0.1625 -8.3991 -1.2152 43 1 0.8398 -3.9360 -0.5791 44 1 2.5686 -3.5561 -0.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034362020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:47 Heat of formation + Delta-G solvation = 45.216167 kcal Electronic energy + Delta-G solvation = -27753.678769 eV Core-core repulsion = 23991.023964 eV Total energy + Delta-G solvation = -3762.654805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.08851 -39.41381 -37.76464 -36.64354 -34.81078 -33.55719 -32.24888 -30.85901 -30.64436 -29.71472 -26.03815 -25.00456 -24.78776 -24.35877 -22.86621 -21.36902 -20.95935 -20.19884 -19.27808 -18.53501 -17.61934 -17.23073 -16.67072 -16.30155 -15.75654 -15.38703 -14.89657 -14.75144 -14.51592 -14.35788 -14.07094 -13.79434 -13.68339 -13.48561 -13.06603 -12.97521 -12.55861 -12.52735 -12.34347 -12.28829 -11.76940 -11.31300 -11.18773 -10.77139 -10.66661 -10.47787 -10.45559 -10.20909 -10.17483 -10.03425 -10.00888 -9.84745 -9.66966 -9.40545 -9.33001 -8.96626 -8.30298 -8.21128 -6.78012 -6.04584 -3.32173 -0.06632 0.41101 1.04886 1.49263 2.02795 2.70385 3.09861 3.49063 3.52395 3.56099 3.70343 3.93197 4.15614 4.38001 4.44668 4.60627 4.73712 4.92033 4.98185 5.12294 5.21832 5.26667 5.33341 5.51310 5.53224 5.58088 5.79910 5.81496 5.85008 5.96983 6.02015 6.07622 6.27904 6.32299 6.43187 6.53161 6.64709 6.70181 6.76390 6.81448 6.88412 7.16343 7.38506 7.41813 7.53200 8.09334 8.20556 8.60337 9.17946 9.85599 10.25737 11.14445 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.002542 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.330833 B =11010.571128 C =11185.828081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.018 4.018 3 Si 1.059 2.941 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.359 4.359 8 H 0.050 0.950 9 N -0.586 5.586 10 C 0.142 3.858 11 C -0.143 4.143 12 C -0.098 4.098 13 C -0.114 4.114 14 C 0.132 3.868 15 H 0.082 0.918 16 N -0.713 5.713 17 C 0.560 3.440 18 O -0.528 6.528 19 C -0.143 4.143 20 C 0.124 3.876 21 N -0.475 5.475 22 C 0.178 3.822 23 C -0.217 4.217 24 S 0.116 5.884 25 C -0.171 4.171 26 C -0.122 4.122 27 C 0.017 3.983 28 C 0.142 3.858 29 H 0.270 0.730 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.396 0.604 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.176 0.824 42 H 0.170 0.830 43 H 0.019 0.981 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -22.055 -0.887 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.222 4.222 3 Si 0.889 3.111 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.488 4.488 8 H 0.067 0.933 9 N -0.308 5.308 10 C 0.015 3.985 11 C -0.183 4.183 12 C -0.136 4.136 13 C -0.152 4.152 14 C 0.027 3.973 15 H 0.100 0.900 16 N -0.364 5.364 17 C 0.346 3.654 18 O -0.405 6.405 19 C -0.150 4.150 20 C -0.030 4.030 21 N -0.183 5.183 22 C 0.010 3.990 23 C -0.334 4.334 24 S 0.378 5.622 25 C -0.307 4.307 26 C -0.151 4.151 27 C 0.000 4.000 28 C 0.016 3.984 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.231 0.769 39 H 0.181 0.819 40 H 0.183 0.817 41 H 0.193 0.807 42 H 0.187 0.813 43 H 0.037 0.963 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.959 -21.672 -1.568 22.531 hybrid contribution -0.352 -0.424 0.580 0.800 sum 5.607 -22.096 -0.989 22.817 Atomic orbital electron populations 1.70772 1.06946 1.30262 1.45748 1.25831 0.96221 1.01635 0.98465 0.83616 0.75035 0.76223 0.76265 1.21154 1.21990 1.21954 1.19854 1.00371 0.89887 1.38667 0.93258 1.43561 1.59946 1.01090 1.26245 1.20946 0.91805 1.01241 0.84522 1.21374 1.01592 0.95761 0.99539 1.20258 0.98486 0.98114 0.96759 1.21262 0.98252 1.00198 0.95530 1.21608 0.95927 0.85401 0.94347 0.90004 1.46140 1.10042 1.23118 1.57058 1.17814 0.87148 0.81801 0.78645 1.90750 1.13277 1.77786 1.58714 1.20926 0.94563 0.96558 1.02958 1.22760 0.90354 0.95406 0.94433 1.67739 1.39466 1.01773 1.09352 1.22382 0.88154 0.95844 0.92602 1.23871 0.99677 1.01488 1.08394 1.84151 0.94882 1.24382 1.58753 1.25610 1.03098 0.98461 1.03505 1.20339 0.94784 0.99331 1.00649 1.18272 0.93482 0.92788 0.95424 1.21580 0.98565 0.85556 0.92719 0.91945 0.90274 0.95789 0.91706 0.93472 0.93537 0.93381 0.89972 0.92768 0.76899 0.81862 0.81712 0.80676 0.81312 0.96326 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 12.18 55.49 0.68 -25.90 16 2 C -0.02 -0.50 4.68 -17.43 -0.08 -0.58 16 3 Si 1.06 24.85 30.01 -169.99 -5.10 19.75 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.36 -9.74 9.17 -15.06 -0.14 -9.88 16 8 H 0.05 1.36 7.97 -52.49 -0.42 0.94 16 9 N -0.59 -14.24 2.01 -171.87 -0.35 -14.58 16 10 C 0.14 3.27 4.89 -4.08 -0.02 3.25 16 11 C -0.14 -2.75 5.74 -28.58 -0.16 -2.91 16 12 C -0.10 -1.59 5.16 -29.79 -0.15 -1.75 16 13 C -0.11 -1.79 5.07 -28.02 -0.14 -1.93 16 14 C 0.13 2.25 2.27 -68.32 -0.15 2.09 16 15 H 0.08 1.54 6.74 -51.93 -0.35 1.19 16 16 N -0.71 -9.94 4.93 -55.28 -0.27 -10.22 16 17 C 0.56 8.52 7.72 -12.55 -0.10 8.43 16 18 O -0.53 -9.74 14.13 5.27 0.07 -9.67 16 19 C -0.14 -1.85 5.94 -104.21 -0.62 -2.47 16 20 C 0.12 1.35 10.67 -17.32 -0.18 1.17 16 21 N -0.47 -5.20 10.32 -12.87 -0.13 -5.33 16 22 C 0.18 1.70 11.20 -17.23 -0.19 1.51 16 23 C -0.22 -2.27 6.52 -38.48 -0.25 -2.53 16 24 S 0.12 0.95 23.29 -107.50 -2.50 -1.55 16 25 C -0.17 -1.56 11.10 28.82 0.32 -1.24 16 26 C -0.12 -1.47 9.43 -40.84 -0.39 -1.85 16 27 C 0.02 0.22 5.88 -106.75 -0.63 -0.41 16 28 C 0.14 3.05 5.86 -2.76 -0.02 3.03 16 29 H 0.27 8.14 7.39 -40.82 -0.30 7.84 16 30 H 0.08 2.08 5.28 -51.93 -0.27 1.81 16 31 H 0.02 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.77 7.35 -51.93 -0.38 0.39 16 36 H 0.08 1.46 7.49 -51.93 -0.39 1.07 16 37 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 38 H 0.40 4.26 6.58 -40.82 -0.27 3.99 16 39 H 0.16 1.35 6.37 -52.49 -0.33 1.02 16 40 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.17 2.29 6.28 -52.48 -0.33 1.96 16 43 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 44 H 0.05 1.09 7.86 -51.93 -0.41 0.68 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -32.12 363.49 -10.66 -42.78 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.62 Total: 5.31 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.91 Total: -6.07 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.08 Total: -56.03 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.10 Total: 19.75 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.50 Total: -1.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.12 -10.66 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034362020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.996 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds