Wall clock time and date at job start Wed Apr 1 2020 02:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46756 * 239.99732 * 3 2 1 6 6 H 1.48501 * 109.46873 * 119.99928 * 3 2 1 7 7 C 1.38817 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99506 * 150.03143 * 7 2 1 9 9 N 1.36929 * 120.00059 * 330.03635 * 7 2 1 10 10 C 1.44580 * 118.64288 * 325.31304 * 9 7 2 11 11 C 1.54868 * 109.60245 * 270.70770 * 10 9 7 12 12 C 1.47092 * 110.32051 * 288.73369 * 11 10 9 13 13 C 1.52570 * 114.32633 * 62.79962 * 12 11 10 14 14 C 1.50878 * 109.35827 * 274.98606 * 13 12 11 15 15 H 1.08994 * 109.36788 * 331.69382 * 14 13 12 16 16 N 1.46497 * 109.36749 * 212.07765 * 14 13 12 17 17 C 1.34775 * 120.00320 * 155.00399 * 16 14 13 18 18 O 1.21612 * 119.99964 * 359.97438 * 17 16 14 19 19 C 1.47368 * 120.00504 * 180.02562 * 17 16 14 20 20 C 1.38772 * 120.54966 * 359.72144 * 19 17 16 21 21 N 1.31900 * 121.11869 * 179.75527 * 20 19 17 22 22 C 1.31672 * 122.22007 * 0.49459 * 21 20 19 23 23 C 1.39288 * 121.13716 * 359.78435 * 22 21 20 24 24 S 1.75882 * 131.39495 * 180.02562 * 23 22 21 25 25 C 1.75556 * 91.52551 * 179.97438 * 24 23 22 26 26 C 1.32473 * 110.78974 * 359.97438 * 25 24 23 27 27 C 1.40010 * 115.78411 * 0.02562 * 26 25 24 28 28 C 1.47596 * 118.64723 * 145.04985 * 9 7 2 29 29 H 0.97003 * 119.99901 * 175.11384 * 1 2 3 30 30 H 1.09001 * 109.45147 * 30.74501 * 10 9 7 31 31 H 1.09006 * 109.45113 * 150.69621 * 10 9 7 32 32 H 1.08991 * 109.32910 * 48.99169 * 11 10 9 33 33 H 1.09002 * 109.33131 * 168.64536 * 11 10 9 34 34 H 1.09000 * 108.51405 * 184.05446 * 12 11 10 35 35 H 1.09006 * 108.51208 * 301.70154 * 12 11 10 36 36 H 1.08995 * 109.49157 * 34.95682 * 13 12 11 37 37 H 1.08997 * 109.48990 * 155.01938 * 13 12 11 38 38 H 0.97003 * 120.00214 * 335.00232 * 16 14 13 39 39 H 1.08001 * 119.43859 * 359.97438 * 20 19 17 40 40 H 1.08005 * 119.42955 * 179.75728 * 22 21 20 41 41 H 1.07996 * 124.60005 * 180.02562 * 25 24 23 42 42 H 1.08008 * 122.10654 * 180.02562 * 26 25 24 43 43 H 1.09007 * 108.94966 * 258.57380 * 28 9 7 44 44 H 1.09000 * 108.94673 * 17.19669 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9819 -1.2648 -0.4666 9 7 1.4629 -2.3085 0.5933 10 6 0.6550 -2.1312 1.7791 11 6 1.5572 -2.1926 3.0364 12 6 2.0263 -3.5684 3.2618 13 6 2.9003 -4.1257 2.1423 14 6 2.0203 -4.7027 1.0610 15 1 1.0840 -5.0453 1.5015 16 7 2.7026 -5.8369 0.4331 17 6 1.9849 -6.8047 -0.1708 18 8 0.7709 -6.7368 -0.1941 19 6 2.6711 -7.9460 -0.8020 20 6 4.0561 -8.0327 -0.7863 21 7 4.6816 -9.0515 -1.3435 22 6 4.0354 -10.0270 -1.9472 23 6 2.6445 -10.0311 -2.0227 24 16 1.5225 -11.1745 -2.7488 25 6 0.1436 -10.2064 -2.2556 26 6 0.5386 -9.1238 -1.6023 27 6 1.9222 -8.9783 -1.4453 28 6 1.7172 -3.6322 -0.0080 29 1 -0.4850 -0.8370 -0.0716 30 1 0.1564 -1.1629 1.7372 31 1 -0.0928 -2.9227 1.8305 32 1 2.4164 -1.5369 2.8962 33 1 0.9884 -1.8612 3.9052 34 1 2.5967 -3.5918 4.1904 35 1 1.1571 -4.2164 3.3746 36 1 3.5115 -3.3254 1.7253 37 1 3.5469 -4.9075 2.5407 38 1 3.6709 -5.8914 0.4519 39 1 4.6312 -7.2546 -0.3066 40 1 4.5934 -10.8378 -2.3919 41 1 -0.8868 -10.4596 -2.4567 42 1 -0.1625 -8.3991 -1.2152 43 1 0.8398 -3.9360 -0.5791 44 1 2.5686 -3.5561 -0.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034362020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:46 Heat of formation + Delta-G solvation = 25.496277 kcal Electronic energy + Delta-G solvation = -27754.533887 eV Core-core repulsion = 23991.023964 eV Total energy + Delta-G solvation = -3763.509923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.01961 -40.63566 -39.27477 -37.48665 -36.38735 -35.11832 -33.38395 -32.69605 -31.44573 -31.10746 -27.83266 -26.29997 -25.84587 -25.60790 -24.47177 -22.38328 -22.05429 -21.54036 -20.97564 -19.49204 -19.24519 -18.55473 -17.58761 -17.31672 -16.90805 -16.75251 -16.29796 -15.99562 -15.72095 -15.54143 -15.37260 -15.15238 -15.07684 -14.93780 -14.52605 -14.20806 -13.99702 -13.78339 -13.44590 -13.36002 -13.14649 -12.81322 -12.60454 -12.40843 -12.09886 -12.03583 -11.89828 -11.84041 -11.60719 -11.46286 -11.38190 -11.23038 -11.06668 -10.72281 -10.53705 -10.22538 -10.12293 -8.95788 -8.87052 -8.18951 -5.49377 -0.92229 -0.39113 0.33254 0.72339 1.18127 1.58335 1.64552 1.65469 1.84551 1.93606 2.63670 2.66148 3.14176 3.18827 3.38202 3.48171 3.59987 3.64182 3.79598 3.90795 3.92933 4.12323 4.15259 4.24579 4.26764 4.32401 4.45903 4.48088 4.68281 4.74009 4.79776 4.92115 4.97414 4.99034 5.03833 5.14566 5.22092 5.24228 5.27332 5.33686 5.39072 5.51393 5.60591 5.91861 6.35913 6.39161 6.62695 7.04745 7.13267 7.80109 8.17443 8.91996 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.002542 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.330833 B =11010.571128 C =11185.828081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.068 4.068 3 Si 1.110 2.890 4 H -0.294 1.294 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.361 4.361 8 H 0.044 0.956 9 N -0.596 5.596 10 C 0.142 3.858 11 C -0.129 4.129 12 C -0.099 4.099 13 C -0.106 4.106 14 C 0.151 3.849 15 H 0.064 0.936 16 N -0.701 5.701 17 C 0.560 3.440 18 O -0.570 6.570 19 C -0.172 4.172 20 C 0.135 3.865 21 N -0.490 5.490 22 C 0.191 3.809 23 C -0.237 4.237 24 S 0.185 5.815 25 C -0.157 4.157 26 C -0.162 4.162 27 C -0.003 4.003 28 C 0.147 3.853 29 H 0.250 0.750 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.414 0.586 39 H 0.187 0.813 40 H 0.203 0.797 41 H 0.203 0.797 42 H 0.142 0.858 43 H -0.019 1.019 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -24.487 -0.559 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.266 4.266 3 Si 0.934 3.066 4 H -0.220 1.220 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.062 0.938 9 N -0.319 5.319 10 C 0.015 3.985 11 C -0.169 4.169 12 C -0.137 4.137 13 C -0.144 4.144 14 C 0.046 3.954 15 H 0.082 0.918 16 N -0.353 5.353 17 C 0.347 3.653 18 O -0.450 6.450 19 C -0.179 4.179 20 C -0.018 4.018 21 N -0.199 5.199 22 C 0.024 3.976 23 C -0.355 4.355 24 S 0.449 5.551 25 C -0.293 4.293 26 C -0.191 4.191 27 C -0.020 4.020 28 C 0.021 3.979 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.253 0.747 39 H 0.204 0.796 40 H 0.219 0.781 41 H 0.220 0.780 42 H 0.159 0.841 43 H -0.001 1.001 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.694 -24.150 -1.233 25.696 hybrid contribution -1.259 0.140 0.333 1.310 sum 7.435 -24.010 -0.899 25.151 Atomic orbital electron populations 1.70909 1.07974 1.28982 1.48625 1.27198 0.96196 1.05034 0.98162 0.82939 0.74056 0.72105 0.77488 1.21980 1.20316 1.20036 1.20060 0.99954 0.90931 1.38095 0.93790 1.43720 1.59920 1.01504 1.26786 1.20914 0.92367 0.99100 0.86122 1.21211 1.00119 0.97814 0.97717 1.20245 0.99220 0.95857 0.98392 1.21209 0.97903 1.00673 0.94595 1.21133 0.96252 0.84784 0.93280 0.91783 1.45915 1.10872 1.21877 1.56673 1.18255 0.86754 0.82329 0.77918 1.90734 1.15246 1.78801 1.60248 1.20741 0.95428 0.96456 1.05295 1.23069 0.89531 0.95767 0.93385 1.67857 1.39480 1.02254 1.10265 1.23030 0.88042 0.95858 0.90700 1.24154 1.00516 1.01839 1.08952 1.83909 0.92578 1.22007 1.56652 1.26030 1.05212 0.97224 1.00809 1.20220 0.94636 1.00644 1.03594 1.18495 0.93968 0.93593 0.95924 1.21570 0.96632 0.85799 0.93935 0.94008 0.93755 0.96161 0.93271 0.91826 0.90140 0.93090 0.91697 0.88674 0.74733 0.79650 0.78075 0.78035 0.84060 1.00106 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.03 12.18 21.65 0.26 -56.76 16 2 C -0.07 -3.87 4.68 84.86 0.40 -3.48 16 3 Si 1.11 50.72 30.01 68.60 2.06 52.78 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.36 -20.15 9.17 84.04 0.77 -19.38 16 8 H 0.04 2.48 7.97 -2.91 -0.02 2.45 16 9 N -0.60 -30.18 2.01 -697.68 -1.40 -31.59 16 10 C 0.14 6.78 4.89 87.38 0.43 7.21 16 11 C -0.13 -4.91 5.74 29.40 0.17 -4.74 16 12 C -0.10 -3.03 5.16 28.61 0.15 -2.88 16 13 C -0.11 -3.12 5.07 29.76 0.15 -2.97 16 14 C 0.15 5.22 2.27 44.74 0.10 5.33 16 15 H 0.06 2.49 6.74 -2.39 -0.02 2.47 16 16 N -0.70 -19.50 4.93 -447.07 -2.20 -21.70 16 17 C 0.56 17.68 7.72 86.65 0.67 18.35 16 18 O -0.57 -22.64 14.13 -4.07 -0.06 -22.69 16 19 C -0.17 -4.47 5.94 -19.60 -0.12 -4.59 16 20 C 0.14 2.77 10.67 84.81 0.90 3.67 16 21 N -0.49 -9.59 10.32 -194.64 -2.01 -11.60 16 22 C 0.19 3.11 11.20 84.97 0.95 4.06 16 23 C -0.24 -4.53 6.52 22.98 0.15 -4.38 16 24 S 0.19 2.51 23.29 -56.49 -1.32 1.20 16 25 C -0.16 -2.66 11.10 66.69 0.74 -1.92 16 26 C -0.16 -4.03 9.43 21.57 0.20 -3.83 16 27 C 0.00 -0.07 5.88 -21.24 -0.12 -0.20 16 28 C 0.15 6.62 5.86 86.61 0.51 7.12 16 29 H 0.25 16.06 7.39 -92.71 -0.69 15.37 16 30 H 0.04 2.45 5.28 -2.39 -0.01 2.44 16 31 H 0.02 0.95 8.06 -2.38 -0.02 0.93 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.05 1.55 7.35 -2.38 -0.02 1.53 16 36 H 0.06 2.20 7.49 -2.39 -0.02 2.18 16 37 H 0.09 2.08 7.94 -2.39 -0.02 2.06 16 38 H 0.41 8.29 6.58 -92.71 -0.61 7.68 16 39 H 0.19 2.67 6.37 -2.91 -0.02 2.65 16 40 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.20 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.14 4.27 6.28 -2.91 -0.02 4.25 16 43 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 44 H 0.05 2.06 7.86 -2.39 -0.02 2.04 16 Total: -1.00 -75.12 363.49 1.90 -73.22 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.52 Total: 19.76 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 6.05 Total: -2.61 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -5.35 Total: -121.66 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.69 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.06 Total: 52.78 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.32 Total: 1.20 kcal Total: -75.12 1.90 -73.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034362020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.716 kcal (2) G-P(sol) polarization free energy of solvation -75.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds