Wall clock time and date at job start Wed Apr 1 2020 03:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99676 * 2 1 4 4 H 1.48499 * 109.47266 * 269.99858 * 3 2 1 5 5 H 1.48502 * 109.47364 * 30.00076 * 3 2 1 6 6 H 1.48505 * 109.46889 * 150.00078 * 3 2 1 7 7 C 1.38807 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99975 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.47168 * 135.99604 * 359.63845 * 9 7 2 11 11 C 1.52944 * 87.85589 * 206.91589 * 10 9 7 12 12 C 1.47162 * 136.00221 * 179.97438 * 9 7 2 13 13 C 1.52555 * 114.11151 * 87.94860 * 11 10 9 14 14 C 1.53359 * 109.12630 * 190.31871 * 13 11 10 15 15 N 1.46882 * 108.74813 * 307.75516 * 14 13 11 16 16 C 1.34784 * 120.46161 * 235.60350 * 15 14 13 17 17 O 1.21727 * 119.99812 * 174.74223 * 16 15 14 18 18 C 1.46451 * 119.99855 * 354.74680 * 16 15 14 19 19 C 1.37462 * 125.80478 * 136.48107 * 18 16 15 20 20 C 1.40662 * 107.55518 * 179.87503 * 19 18 16 21 21 S 1.76024 * 142.39444 * 180.02562 * 20 19 18 22 22 C 1.75591 * 91.30756 * 180.36946 * 21 20 19 23 23 C 1.32765 * 110.47892 * 359.97438 * 22 21 20 24 24 C 1.38243 * 108.03237 * 0.38470 * 20 19 18 25 25 N 1.37916 * 125.80851 * 316.78342 * 18 16 15 26 26 H 0.97003 * 125.68504 * 0.02562 * 25 18 16 27 27 C 1.46887 * 119.07696 * 55.62724 * 15 14 13 28 28 C 1.52559 * 114.12039 * 220.61602 * 11 10 9 29 29 H 0.97005 * 120.00384 * 359.97438 * 1 2 3 30 30 H 1.08997 * 113.48863 * 321.66025 * 10 9 7 31 31 H 1.08999 * 113.48893 * 92.17390 * 10 9 7 32 32 H 1.09007 * 113.48506 * 267.82770 * 12 9 7 33 33 H 1.08992 * 113.48777 * 38.33489 * 12 9 7 34 34 H 1.09003 * 109.53101 * 310.20954 * 13 11 10 35 35 H 1.08999 * 109.53161 * 70.42226 * 13 11 10 36 36 H 1.09006 * 109.58818 * 187.97784 * 14 13 11 37 37 H 1.08997 * 109.59487 * 67.53520 * 14 13 11 38 38 H 1.08001 * 126.22549 * 359.97438 * 19 18 16 39 39 H 1.08003 * 124.76332 * 179.97438 * 22 21 20 40 40 H 1.07997 * 122.16648 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.59525 * 184.59035 * 27 15 14 42 42 H 1.08999 * 109.59611 * 64.14210 * 27 15 14 43 43 H 1.09000 * 109.52497 * 289.56881 * 28 11 10 44 44 H 1.08996 * 109.52791 * 49.70583 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.0890 -2.7937 0.0089 11 6 0.3457 -4.0897 0.6950 12 6 1.6817 -3.8159 0.0020 13 6 0.4038 -4.0000 2.2168 14 6 1.0904 -5.2555 2.7683 15 7 0.4244 -6.4406 2.2121 16 6 -0.0818 -7.3862 3.0284 17 8 -0.7152 -8.3159 2.5636 18 6 0.1303 -7.2949 4.4746 19 6 -0.8189 -7.5223 5.4425 20 6 -0.2036 -7.3322 6.6931 21 16 -0.5201 -7.3765 8.4241 22 6 1.1379 -6.9205 8.7796 23 6 1.8271 -6.7618 7.6560 24 6 1.1152 -6.9816 6.4722 25 7 1.3148 -6.9605 5.0969 26 1 2.1481 -6.7457 4.6493 27 6 0.3181 -6.5812 0.7538 28 6 -0.3743 -5.3354 0.1878 29 1 -0.4851 0.8401 0.0004 30 1 -0.7191 -2.1613 0.6342 31 1 -0.5020 -2.9474 -0.9881 32 1 1.7492 -4.2471 -0.9970 33 1 2.5481 -4.0474 0.6214 34 1 0.9717 -3.1164 2.5083 35 1 -0.6079 -3.9324 2.6168 36 1 1.0107 -5.2679 3.8554 37 1 2.1406 -5.2559 2.4766 38 1 -1.8493 -7.7984 5.2736 39 1 1.5405 -6.7878 9.7729 40 1 2.8699 -6.4808 7.6560 41 1 -0.2702 -7.4669 0.5139 42 1 1.3145 -6.6736 0.3219 43 1 -1.4133 -5.3149 0.5165 44 1 -0.3371 -5.3597 -0.9013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035828559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:52 Heat of formation + Delta-G solvation = 85.771652 kcal Electronic energy + Delta-G solvation = -27811.981526 eV Core-core repulsion = 24051.085339 eV Total energy + Delta-G solvation = -3760.896187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56855 -41.36670 -40.02335 -37.23133 -36.24369 -34.46421 -32.63552 -31.97245 -31.95071 -29.55857 -28.52574 -26.61083 -25.55148 -24.55502 -24.18372 -23.49703 -22.37075 -21.53243 -20.49307 -19.70266 -18.72685 -18.52327 -17.68252 -17.08852 -16.87612 -16.51645 -16.38631 -16.12967 -15.68298 -15.48301 -15.22011 -15.13429 -14.96337 -14.75272 -14.28730 -14.19008 -13.87065 -13.74786 -13.66270 -13.14873 -12.94407 -12.84823 -12.79345 -12.66756 -12.50070 -12.18943 -12.17787 -11.79071 -11.72422 -11.66547 -11.24511 -11.17667 -10.93618 -10.81518 -10.73034 -9.77077 -9.06641 -8.89307 -8.63250 -7.89478 -5.22085 -0.15811 0.58977 0.91271 1.18564 1.45127 1.46678 1.55176 1.67205 1.68297 1.81091 2.27155 2.47471 3.32040 3.36829 3.45489 3.57572 3.75934 3.85808 4.01956 4.04952 4.08684 4.26557 4.33308 4.37891 4.49022 4.55147 4.60428 4.70335 4.77196 4.80361 4.81704 4.89509 4.98278 5.04467 5.11088 5.12070 5.18029 5.27163 5.30259 5.40617 5.44466 5.56216 5.62041 5.71241 5.94450 6.18258 6.35345 6.88618 6.91646 7.62037 8.63753 9.28016 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.002781 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.908066 B =10064.541924 C =11486.416762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.223 4.223 8 H 0.086 0.914 9 N -0.637 5.637 10 C 0.160 3.840 11 C -0.087 4.087 12 C 0.132 3.868 13 C -0.088 4.088 14 C 0.112 3.888 15 N -0.594 5.594 16 C 0.589 3.411 17 O -0.560 6.560 18 C 0.006 3.994 19 C -0.100 4.100 20 C -0.246 4.246 21 S 0.125 5.875 22 C -0.173 4.173 23 C -0.126 4.126 24 C 0.063 3.937 25 N -0.530 5.530 26 H 0.432 0.568 27 C 0.119 3.881 28 C -0.107 4.107 29 H 0.246 0.754 30 H 0.031 0.969 31 H 0.012 0.988 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.205 0.795 40 H 0.168 0.832 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -17.109 15.923 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.352 4.352 8 H 0.104 0.896 9 N -0.363 5.363 10 C 0.034 3.966 11 C -0.088 4.088 12 C 0.007 3.993 13 C -0.127 4.127 14 C -0.011 4.011 15 N -0.326 5.326 16 C 0.377 3.623 17 O -0.439 6.439 18 C -0.108 4.108 19 C -0.131 4.131 20 C -0.365 4.365 21 S 0.384 5.616 22 C -0.309 4.309 23 C -0.159 4.159 24 C -0.057 4.057 25 N -0.134 5.134 26 H 0.274 0.726 27 C -0.002 4.002 28 C -0.146 4.146 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.168 0.832 39 H 0.222 0.778 40 H 0.185 0.815 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.928 -17.517 16.426 24.191 hybrid contribution 1.432 1.884 -1.694 2.910 sum 4.360 -15.632 14.732 21.919 Atomic orbital electron populations 1.70029 1.06508 1.25403 1.58348 1.25599 0.96454 1.00789 1.03291 0.85117 0.77831 0.79309 0.77327 1.21681 1.22338 1.18942 1.19317 0.90659 0.82850 1.42326 0.89627 1.45907 1.03718 1.00695 1.85969 1.22015 0.87757 0.91255 0.95524 1.21847 0.97325 0.94402 0.95252 1.22545 0.95730 0.83686 0.97355 1.21287 1.00616 0.97409 0.93345 1.21988 0.97179 0.82879 0.99017 1.48125 1.56277 1.20849 1.07344 1.17199 0.78842 0.81961 0.84282 1.90833 1.41822 1.34981 1.76256 1.19939 0.87645 1.11539 0.91724 1.20462 0.99320 1.05103 0.88188 1.22906 0.98271 1.16336 0.99027 1.83935 1.11083 1.72806 0.93742 1.25681 0.96075 1.05844 1.03288 1.19198 1.02412 1.06608 0.87678 1.18773 0.94445 1.07545 0.84914 1.42077 1.11216 1.56411 1.03742 0.72636 1.21718 1.02343 0.98461 0.77686 1.21675 0.99078 0.92627 1.01213 0.94501 0.95034 0.97075 0.93826 0.92761 0.91738 0.92696 0.88801 0.88839 0.83189 0.77777 0.81497 0.88985 0.89014 0.92133 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 11.52 21.65 0.25 -57.30 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.98 45.14 29.55 68.60 2.03 47.17 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.22 -12.17 10.74 84.03 0.90 -11.27 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.64 -31.33 3.55 -738.09 -2.62 -33.95 16 10 C 0.16 7.44 6.54 83.32 0.55 7.98 16 11 C -0.09 -2.92 0.84 -52.50 -0.04 -2.96 16 12 C 0.13 4.78 7.63 83.33 0.64 5.42 16 13 C -0.09 -2.75 5.27 30.57 0.16 -2.59 16 14 C 0.11 2.52 5.59 86.43 0.48 3.00 16 15 N -0.59 -14.26 2.94 -823.41 -2.42 -16.68 16 16 C 0.59 15.92 7.56 86.38 0.65 16.58 16 17 O -0.56 -18.63 16.48 -4.44 -0.07 -18.70 16 18 C 0.01 0.15 5.74 40.14 0.23 0.38 16 19 C -0.10 -2.50 10.81 22.68 0.25 -2.25 16 20 C -0.25 -5.50 7.26 22.86 0.17 -5.34 16 21 S 0.13 2.11 23.31 -56.49 -1.32 0.79 16 22 C -0.17 -2.10 11.13 66.64 0.74 -1.36 16 23 C -0.13 -1.77 10.16 21.49 0.22 -1.55 16 24 C 0.06 1.22 7.67 38.40 0.29 1.51 16 25 N -0.53 -9.98 4.80 -177.15 -0.85 -10.83 16 26 H 0.43 5.88 8.08 -92.71 -0.75 5.14 16 27 C 0.12 2.78 6.35 86.42 0.55 3.33 16 28 C -0.11 -2.91 5.30 30.57 0.16 -2.75 16 29 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 30 H 0.03 1.69 7.11 -2.39 -0.02 1.67 16 31 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 32 H 0.04 1.52 8.06 -2.38 -0.02 1.50 16 33 H 0.05 1.78 7.53 -2.39 -0.02 1.76 16 34 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 1.93 5.07 -2.38 -0.01 1.92 16 37 H 0.09 1.78 7.60 -2.39 -0.02 1.77 16 38 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.21 1.04 8.06 -2.91 -0.02 1.01 16 40 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.09 2.22 6.97 -2.39 -0.02 2.20 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 Total: -1.00 -72.50 366.87 1.70 -70.80 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.29 Total: 13.96 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 6.41 Total: 4.74 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -5.64 Total: -118.76 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.07 Total: -18.70 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.32 Total: 0.79 kcal Total: -72.50 1.70 -70.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035828559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.577 kcal (2) G-P(sol) polarization free energy of solvation -72.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds