Wall clock time and date at job start Wed Apr 1 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48496 * 109.46759 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46902 * 299.99639 * 3 2 1 6 6 H 1.48500 * 109.47240 * 59.99558 * 3 2 1 7 7 C 1.38814 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99756 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.48220 * 126.40287 * 359.93520 * 9 7 2 11 11 C 1.55299 * 107.01194 * 175.08134 * 10 9 7 12 12 C 1.53750 * 101.87274 * 337.56722 * 11 10 9 13 13 H 1.08997 * 111.30487 * 280.13852 * 12 11 10 14 14 C 1.52239 * 114.74159 * 152.74300 * 12 11 10 15 15 N 1.47717 * 106.36281 * 190.41943 * 14 12 11 16 16 C 1.34782 * 119.68172 * 232.08215 * 15 14 12 17 17 O 1.21730 * 120.00160 * 359.85928 * 16 15 14 18 18 C 1.46461 * 119.99664 * 179.86045 * 16 15 14 19 19 C 1.37460 * 125.80223 * 207.70978 * 18 16 15 20 20 C 1.40654 * 107.55414 * 179.84621 * 19 18 16 21 21 S 1.76021 * 142.39744 * 180.02562 * 20 19 18 22 22 C 1.75596 * 91.31211 * 180.36533 * 21 20 19 23 23 C 1.32775 * 110.47479 * 359.97438 * 22 21 20 24 24 C 1.38249 * 108.03272 * 0.41068 * 20 19 18 25 25 N 1.37914 * 125.80598 * 28.01117 * 18 16 15 26 26 H 0.97005 * 125.68531 * 359.96549 * 25 18 16 27 27 C 1.46595 * 120.63344 * 52.06449 * 15 14 12 28 28 C 1.53958 * 110.57439 * 312.16748 * 27 15 14 29 29 C 1.45473 * 126.40357 * 179.97438 * 9 7 2 30 30 H 1.09005 * 108.77031 * 94.00542 * 29 9 7 31 31 H 0.97000 * 119.99811 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.91449 * 55.75750 * 10 9 7 33 33 H 1.08995 * 109.95794 * 294.42968 * 10 9 7 34 34 H 1.09000 * 110.95477 * 219.40983 * 11 10 9 35 35 H 1.09000 * 110.95315 * 95.72200 * 11 10 9 36 36 H 1.08998 * 110.06954 * 309.62925 * 14 12 11 37 37 H 1.09006 * 110.06908 * 71.10052 * 14 12 11 38 38 H 1.08006 * 126.22464 * 359.97438 * 19 18 16 39 39 H 1.08000 * 124.76210 * 179.97438 * 22 21 20 40 40 H 1.07998 * 122.16261 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.26068 * 72.45190 * 27 15 14 42 42 H 1.08999 * 109.25472 * 191.89215 * 27 15 14 43 43 H 1.08996 * 109.88670 * 170.51721 * 28 27 15 44 44 H 1.09000 * 109.88379 * 291.60141 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1474 -2.5532 0.0014 11 6 -0.4340 -4.0742 -0.1263 12 6 0.8685 -4.5895 -0.7601 13 1 0.8853 -4.4070 -1.8346 14 6 1.2010 -6.0408 -0.4426 15 7 2.5825 -6.2642 -0.9152 16 6 2.8489 -7.3033 -1.7314 17 8 1.9535 -8.0536 -2.0735 18 6 4.2157 -7.5295 -2.2066 19 6 4.5659 -8.1444 -3.3851 20 6 5.9705 -8.1536 -3.4576 21 16 7.3109 -8.6641 -4.4781 22 6 8.4791 -8.0436 -3.3233 23 6 7.8597 -7.5082 -2.2780 24 6 6.4621 -7.5508 -2.3147 25 7 5.3703 -7.1670 -1.5451 26 1 5.4132 -6.7184 -0.6860 27 6 3.6666 -5.3665 -0.5054 28 6 3.2479 -3.8958 -0.6842 29 6 1.9078 -3.7211 0.0005 30 1 1.9822 -4.0714 1.0301 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5811 -2.0213 -0.8454 33 1 -0.5638 -2.1740 0.9345 34 1 -1.2855 -4.2567 -0.7820 35 1 -0.5955 -4.5240 0.8533 36 1 1.1411 -6.2117 0.6322 37 1 0.5130 -6.7052 -0.9656 38 1 3.8861 -8.5454 -4.1223 39 1 9.5511 -8.0909 -3.4460 40 1 8.4000 -7.0688 -1.4526 41 1 3.9063 -5.5472 0.5424 42 1 4.5481 -5.5658 -1.1148 43 1 3.9878 -3.2411 -0.2239 44 1 3.1547 -3.6632 -1.7450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036862039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:06 Heat of formation + Delta-G solvation = 88.971186 kcal Electronic energy + Delta-G solvation = -27958.755358 eV Core-core repulsion = 24197.997914 eV Total energy + Delta-G solvation = -3760.757445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.77949 -39.94161 -38.24985 -35.79504 -35.34884 -32.81149 -31.72588 -31.25812 -29.98711 -28.69894 -27.79864 -25.20191 -24.15897 -23.25008 -22.63604 -21.91677 -20.87303 -20.08495 -19.75936 -19.28011 -18.10747 -16.93631 -16.29658 -16.05268 -15.72898 -15.57204 -15.13824 -14.59858 -14.53950 -14.40751 -14.08008 -13.95662 -13.63475 -13.23641 -13.21204 -12.95084 -12.70617 -12.56994 -12.09623 -11.85617 -11.72468 -11.52140 -11.48674 -11.07911 -10.91615 -10.86698 -10.82093 -10.30482 -10.15236 -10.02592 -9.96679 -9.88382 -9.69525 -9.56730 -8.74402 -8.68658 -8.28397 -7.88983 -6.90386 -5.77592 -3.11205 0.55881 1.30796 1.77352 1.85100 2.51823 2.55134 2.81188 3.22271 3.35024 3.40026 3.42956 4.32175 4.43058 4.50681 4.71930 4.74577 4.94158 5.05965 5.10664 5.20202 5.23061 5.35564 5.46462 5.49836 5.50232 5.69163 5.69878 5.75340 5.78421 5.91417 6.03037 6.05845 6.12865 6.19952 6.24844 6.34758 6.44547 6.52857 6.55571 6.71087 6.96978 7.02650 7.26232 7.49100 7.55681 7.75395 7.98586 8.17894 9.12899 9.76499 10.44155 11.34883 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.002818 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.181259 B = 9933.650599 C =11376.289563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.125 4.125 13 H 0.081 0.919 14 C 0.127 3.873 15 N -0.600 5.600 16 C 0.583 3.417 17 O -0.527 6.527 18 C 0.019 3.981 19 C -0.079 4.079 20 C -0.215 4.215 21 S 0.127 5.873 22 C -0.191 4.191 23 C -0.112 4.112 24 C 0.057 3.943 25 N -0.542 5.542 26 H 0.424 0.576 27 C 0.087 3.913 28 C -0.127 4.127 29 C 0.168 3.832 30 H 0.020 0.980 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.669 -16.914 -3.702 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.099 0.901 14 C 0.006 3.994 15 N -0.332 5.332 16 C 0.370 3.630 17 O -0.404 6.404 18 C -0.096 4.096 19 C -0.109 4.109 20 C -0.335 4.335 21 S 0.387 5.613 22 C -0.327 4.327 23 C -0.146 4.146 24 C -0.061 4.061 25 N -0.150 5.150 26 H 0.269 0.731 27 C -0.037 4.037 28 C -0.166 4.166 29 C 0.060 3.940 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.173 0.827 39 H 0.189 0.811 40 H 0.159 0.841 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.236 -17.673 -5.054 22.651 hybrid contribution 0.486 2.051 1.854 2.807 sum 13.722 -15.623 -3.201 21.038 Atomic orbital electron populations 1.69948 1.04898 1.25004 1.56864 1.24800 0.95687 0.97668 1.02210 0.86082 0.78675 0.83920 0.77289 1.20553 1.21742 1.21744 1.19018 0.90335 0.82298 1.43922 0.90380 1.44230 1.01678 0.99384 1.86617 1.21553 0.83847 0.88298 1.01043 1.22723 0.95716 0.99659 0.99356 1.22645 0.97976 0.93073 1.00808 0.90058 1.21706 0.80872 0.97489 0.99362 1.48255 1.10366 1.27020 1.47587 1.17084 0.86058 0.81234 0.78623 1.90854 1.45643 1.46444 1.57431 1.20299 0.85731 1.07280 0.96245 1.20364 0.91405 1.02190 0.96963 1.22678 0.98289 1.12135 1.00443 1.83912 0.93049 1.62552 1.21784 1.25221 1.03416 1.05961 0.98079 1.18907 0.89615 1.05004 1.01046 1.18427 0.89387 1.05178 0.93077 1.42856 1.03311 1.49167 1.19700 0.73147 1.22328 0.89587 0.91699 1.00041 1.21853 0.99702 0.92640 1.02399 1.20617 0.90915 0.87441 0.95074 0.96245 0.93741 0.92648 0.94275 0.91916 0.92279 0.90982 0.88808 0.82715 0.81071 0.84117 0.91271 0.89648 0.90346 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 10.44 55.49 0.58 -25.89 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.03 9.88 -15.06 -0.15 -6.18 16 8 H 0.08 1.98 7.21 -52.49 -0.38 1.60 16 9 N -0.59 -14.37 3.35 -163.07 -0.55 -14.91 16 10 C 0.18 4.14 5.45 -1.88 -0.01 4.13 16 11 C -0.14 -2.43 6.53 -25.12 -0.16 -2.59 16 12 C -0.12 -2.13 2.86 -89.38 -0.26 -2.39 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.13 1.85 5.96 -3.76 -0.02 1.82 16 15 N -0.60 -8.32 3.00 -174.11 -0.52 -8.84 16 16 C 0.58 8.60 7.59 -12.95 -0.10 8.50 16 17 O -0.53 -9.23 16.34 5.16 0.08 -9.14 16 18 C 0.02 0.25 6.30 -82.10 -0.52 -0.27 16 19 C -0.08 -1.01 10.71 -38.95 -0.42 -1.42 16 20 C -0.22 -2.53 7.26 -38.67 -0.28 -2.81 16 21 S 0.13 1.16 23.31 -107.50 -2.51 -1.34 16 22 C -0.19 -1.45 11.13 28.86 0.32 -1.13 16 23 C -0.11 -0.96 10.16 -40.84 -0.42 -1.37 16 24 C 0.06 0.62 7.67 -84.00 -0.64 -0.02 16 25 N -0.54 -5.77 4.82 -7.34 -0.04 -5.81 16 26 H 0.42 3.59 6.36 -40.82 -0.26 3.33 16 27 C 0.09 1.07 5.19 -3.49 -0.02 1.05 16 28 C -0.13 -2.03 5.48 -26.99 -0.15 -2.18 16 29 C 0.17 3.19 2.55 -68.01 -0.17 3.01 16 30 H 0.02 0.39 7.94 -51.93 -0.41 -0.03 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.06 1.45 7.21 -51.93 -0.37 1.08 16 33 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 38 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.92 4.04 -51.93 -0.21 0.71 16 43 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 44 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -31.80 358.74 -11.38 -43.19 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.73 Total: 2.92 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.09 Total: -2.13 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.52 Total: -55.45 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.80 -11.38 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036862039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.160 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds