Wall clock time and date at job start Wed Apr 1 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99774 * 2 1 4 4 H 1.48496 * 109.46953 * 270.00041 * 3 2 1 5 5 H 1.48500 * 109.47104 * 29.99896 * 3 2 1 6 6 H 1.48503 * 109.47203 * 149.99997 * 3 2 1 7 7 C 1.38811 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99741 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.48216 * 126.40235 * 359.91133 * 9 7 2 11 11 C 1.55288 * 107.01125 * 175.09938 * 10 9 7 12 12 C 1.53744 * 101.87786 * 337.56143 * 11 10 9 13 13 H 1.08990 * 111.31034 * 281.03097 * 12 11 10 14 14 C 1.52239 * 114.74825 * 152.74178 * 12 11 10 15 15 N 1.48912 * 105.76324 * 189.89488 * 14 12 11 16 16 C 1.34780 * 119.82037 * 232.28342 * 15 14 12 17 17 O 1.21728 * 119.99950 * 356.78931 * 16 15 14 18 18 C 1.46409 * 119.99872 * 176.78004 * 16 15 14 19 19 C 1.35777 * 124.96099 * 224.31346 * 18 16 15 20 20 C 1.38877 * 115.19045 * 179.82759 * 19 18 16 21 21 N 1.39734 * 139.91766 * 180.11405 * 20 19 18 22 22 H 0.96998 * 125.63475 * 0.30665 * 21 20 19 23 23 C 1.36217 * 108.73417 * 180.32734 * 21 20 19 24 24 C 1.34512 * 109.29725 * 359.97438 * 23 21 20 25 25 C 1.38251 * 113.38632 * 0.45789 * 20 19 18 26 26 S 1.75620 * 124.96123 * 44.61874 * 18 16 15 27 27 C 1.46599 * 120.49395 * 52.58279 * 15 14 12 28 28 C 1.53946 * 110.57841 * 311.85865 * 27 15 14 29 29 C 1.45473 * 126.40147 * 179.97438 * 9 7 2 30 30 H 1.09001 * 109.26685 * 93.75936 * 29 9 7 31 31 H 0.97002 * 120.00187 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.91676 * 55.77758 * 10 9 7 33 33 H 1.08999 * 109.95796 * 294.44951 * 10 9 7 34 34 H 1.08999 * 110.95689 * 219.40982 * 11 10 9 35 35 H 1.08995 * 110.95923 * 95.72119 * 11 10 9 36 36 H 1.09005 * 110.07011 * 309.63666 * 14 12 11 37 37 H 1.09001 * 110.07000 * 71.20870 * 14 12 11 38 38 H 1.08005 * 122.40464 * 0.02816 * 19 18 16 39 39 H 1.08003 * 125.35248 * 180.02562 * 23 21 20 40 40 H 1.07997 * 126.07614 * 179.97438 * 24 23 21 41 41 H 1.09008 * 109.25292 * 191.57242 * 27 15 14 42 42 H 1.08998 * 109.22217 * 72.12666 * 27 15 14 43 43 H 1.09004 * 109.87941 * 291.59323 * 28 27 15 44 44 H 1.08997 * 109.94448 * 170.55078 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1473 -2.5533 0.0019 11 6 -0.4339 -4.0741 -0.1256 12 6 0.8683 -4.5895 -0.7599 13 1 0.8915 -4.3932 -1.8317 14 6 1.2010 -6.0408 -0.4424 15 7 2.5895 -6.2548 -0.9360 16 6 2.8561 -7.2872 -1.7604 17 8 1.9759 -8.0755 -2.0529 18 6 4.2043 -7.4604 -2.3043 19 6 4.4889 -7.7626 -3.5971 20 6 5.8408 -7.8763 -3.8938 21 7 6.6780 -8.1488 -4.9789 22 1 6.3862 -8.3373 -5.8845 23 6 7.9718 -8.1064 -4.5547 24 6 7.9997 -7.8172 -3.2413 25 6 6.6618 -7.6678 -2.8012 26 16 5.6894 -7.3150 -1.3783 27 6 3.6716 -5.3543 -0.5269 28 6 3.2446 -3.8847 -0.6934 29 6 1.9080 -3.7211 0.0005 30 1 1.9901 -4.0777 1.0273 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5814 -2.0214 -0.8448 33 1 -0.5634 -2.1739 0.9351 34 1 -1.2856 -4.2568 -0.7809 35 1 -0.5950 -4.5239 0.8541 36 1 1.1416 -6.2117 0.6325 37 1 0.5140 -6.7053 -0.9664 38 1 3.7192 -7.9014 -4.3420 39 1 8.8389 -8.2772 -5.1755 40 1 8.8849 -7.7177 -2.6307 41 1 4.5505 -5.5454 -1.1427 42 1 3.9178 -5.5410 0.5184 43 1 3.1441 -3.6456 -1.7521 44 1 3.9838 -3.2284 -0.2340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036880460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:12 Heat of formation + Delta-G solvation = 78.912981 kcal Electronic energy + Delta-G solvation = -27811.940704 eV Core-core repulsion = 24050.747102 eV Total energy + Delta-G solvation = -3761.193601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.38751 -40.15933 -38.27314 -35.35981 -35.23416 -32.70914 -31.53355 -31.15631 -29.93427 -28.62589 -27.70839 -25.08352 -24.32304 -23.01019 -22.38235 -21.59126 -20.89254 -20.05553 -19.60791 -18.68408 -18.52077 -17.07756 -16.25264 -15.92868 -15.64164 -15.33187 -15.04860 -14.76176 -14.50737 -14.25939 -13.91423 -13.85547 -13.67323 -13.27451 -13.05398 -12.71417 -12.63997 -12.43544 -12.14755 -11.76578 -11.60582 -11.46289 -11.39716 -11.05119 -10.81629 -10.76397 -10.68683 -10.17751 -10.09425 -9.92561 -9.85994 -9.78148 -9.61163 -9.45787 -8.61810 -8.56246 -8.24355 -7.77723 -6.82866 -5.70799 -3.03856 0.48793 1.23072 1.80271 2.27688 2.44706 2.65074 3.00076 3.20295 3.40162 3.45202 3.47084 4.43049 4.49951 4.66542 4.74751 4.97701 5.05533 5.12071 5.24539 5.27353 5.36207 5.52463 5.56866 5.59485 5.63576 5.72519 5.78470 5.82309 5.91053 6.02606 6.16292 6.20595 6.25031 6.27662 6.35475 6.47951 6.50983 6.62407 6.66396 6.82954 7.08364 7.14589 7.42711 7.56288 7.62510 7.81862 8.13369 8.25061 9.20152 9.83816 10.51924 11.41790 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014475 B = 0.003004 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.928927 B = 9319.079819 C =10607.789976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.125 4.125 13 H 0.080 0.920 14 C 0.130 3.870 15 N -0.598 5.598 16 C 0.588 3.412 17 O -0.536 6.536 18 C -0.227 4.227 19 C -0.043 4.043 20 C 0.028 3.972 21 N -0.558 5.558 22 H 0.419 0.581 23 C 0.053 3.947 24 C -0.170 4.170 25 C -0.201 4.201 26 S 0.184 5.816 27 C 0.094 3.906 28 C -0.125 4.125 29 C 0.167 3.833 30 H 0.021 0.979 31 H 0.252 0.748 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.177 0.823 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.717 -17.480 -7.039 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.099 0.901 14 C 0.009 3.991 15 N -0.330 5.330 16 C 0.375 3.625 17 O -0.415 6.415 18 C -0.347 4.347 19 C -0.079 4.079 20 C -0.086 4.086 21 N -0.159 5.159 22 H 0.256 0.744 23 C -0.080 4.080 24 C -0.200 4.200 25 C -0.323 4.323 26 S 0.448 5.552 27 C -0.030 4.030 28 C -0.165 4.165 29 C 0.059 3.941 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.162 0.838 39 H 0.194 0.806 40 H 0.164 0.836 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.451 -17.332 -5.773 22.686 hybrid contribution 0.160 0.637 -1.989 2.094 sum 13.611 -16.695 -7.762 22.896 Atomic orbital electron populations 1.69937 1.04891 1.25005 1.57089 1.24788 0.95670 0.97617 1.02387 0.86159 0.78627 0.83697 0.77523 1.21695 1.21735 1.20683 1.19000 0.90373 0.82301 1.43622 0.90343 1.44227 1.01652 0.99463 1.86600 1.21542 0.83951 0.88266 1.00960 1.22719 0.95716 0.99691 0.99335 1.22645 0.97920 0.93185 1.00793 0.90123 1.21882 0.80704 0.97237 0.99263 1.48496 1.10601 1.27265 1.46666 1.16957 0.85723 0.81240 0.78605 1.90817 1.46671 1.43806 1.60211 1.23709 0.97770 1.15160 0.98073 1.19102 0.92841 1.00253 0.95679 1.17959 0.91556 1.11483 0.87618 1.41897 1.04953 1.59196 1.09822 0.74369 1.21851 0.86111 1.04322 0.95725 1.20124 0.94185 1.11265 0.94378 1.23397 0.98584 1.12526 0.97788 1.84004 0.92567 1.70959 1.07711 1.22250 0.89287 0.90800 1.00672 1.21853 0.99399 0.93130 1.02092 1.20656 0.91107 0.87231 0.95151 0.96131 0.93783 0.92728 0.94343 0.92037 0.92279 0.90745 0.89098 0.83790 0.80604 0.83593 0.89278 0.91257 0.91354 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.44 55.49 0.58 -26.30 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.08 9.86 -15.06 -0.15 -6.22 16 8 H 0.08 2.03 7.18 -52.49 -0.38 1.65 16 9 N -0.59 -14.73 3.35 -163.07 -0.55 -15.28 16 10 C 0.18 4.24 5.45 -1.88 -0.01 4.23 16 11 C -0.14 -2.50 6.53 -25.13 -0.16 -2.67 16 12 C -0.13 -2.23 2.84 -89.37 -0.25 -2.48 16 13 H 0.08 1.56 8.12 -51.93 -0.42 1.14 16 14 C 0.13 2.02 6.03 -3.10 -0.02 2.00 16 15 N -0.60 -9.14 3.01 -173.12 -0.52 -9.66 16 16 C 0.59 9.35 7.49 -12.97 -0.10 9.26 16 17 O -0.54 -9.93 16.47 5.16 0.09 -9.84 16 18 C -0.23 -3.11 5.36 -37.18 -0.20 -3.31 16 19 C -0.04 -0.54 10.09 -40.23 -0.41 -0.94 16 20 C 0.03 0.31 7.67 -84.01 -0.64 -0.34 16 21 N -0.56 -4.29 6.21 -10.89 -0.07 -4.36 16 22 H 0.42 1.93 8.96 -40.82 -0.37 1.57 16 23 C 0.05 0.36 11.85 -16.92 -0.20 0.16 16 24 C -0.17 -1.51 10.85 -39.60 -0.43 -1.94 16 25 C -0.20 -2.29 7.31 -38.28 -0.28 -2.57 16 26 S 0.18 2.14 19.99 -107.50 -2.15 -0.01 16 27 C 0.09 1.34 5.57 -3.49 -0.02 1.32 16 28 C -0.13 -2.16 5.45 -27.00 -0.15 -2.31 16 29 C 0.17 3.31 2.57 -68.00 -0.17 3.14 16 30 H 0.02 0.43 7.93 -51.93 -0.41 0.02 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.05 1.46 7.21 -51.93 -0.37 1.08 16 33 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.09 1.42 7.05 -51.93 -0.37 1.06 16 38 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.09 1.16 4.13 -30.61 -0.13 1.04 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 44 H 0.08 1.35 7.59 -51.93 -0.39 0.96 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -33.42 359.77 -11.26 -44.69 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.75 Total: 1.50 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.29 Total: -3.02 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.56 Total: -55.60 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.15 Total: -0.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.42 -11.26 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036880460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.600 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds