Wall clock time and date at job start Wed Apr 1 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99707 * 2 1 4 4 H 1.48507 * 109.46597 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47291 * 299.99442 * 3 2 1 6 6 H 1.48493 * 109.47087 * 59.99967 * 3 2 1 7 7 C 1.38808 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.47165 * 125.59173 * 359.97438 * 9 7 2 11 11 C 1.54666 * 107.34994 * 179.11425 * 10 9 7 12 12 C 1.53304 * 102.71782 * 339.49087 * 11 10 9 13 13 C 1.53312 * 112.22295 * 154.99877 * 12 11 10 14 14 C 1.54664 * 102.71479 * 88.17614 * 13 12 11 15 15 N 1.47171 * 107.34893 * 20.50884 * 14 13 12 16 16 C 1.34777 * 125.59082 * 180.88717 * 15 14 13 17 17 O 1.21723 * 120.00037 * 180.02562 * 16 15 14 18 18 C 1.46498 * 119.99827 * 0.29438 * 16 15 14 19 19 C 1.36120 * 125.70859 * 179.44116 * 18 16 15 20 20 C 1.42232 * 107.62006 * 179.85267 * 19 18 16 21 21 C 1.45590 * 140.77617 * 180.02562 * 20 19 18 22 22 C 1.31812 * 114.63538 * 180.34861 * 21 20 19 23 23 S 1.75349 * 111.24258 * 0.02562 * 22 21 20 24 24 C 1.38172 * 106.99726 * 0.41267 * 20 19 18 25 25 N 1.37459 * 108.16730 * 359.74969 * 24 20 19 26 26 H 0.96999 * 125.68270 * 180.02562 * 25 24 20 27 27 C 1.47783 * 108.81586 * 1.14714 * 15 14 13 28 28 C 1.47792 * 125.59533 * 179.97438 * 9 7 2 29 29 H 0.97004 * 119.99815 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.87485 * 59.67616 * 10 9 7 31 31 H 1.09000 * 109.98502 * 298.61852 * 10 9 7 32 32 H 1.09000 * 110.76502 * 221.18134 * 11 10 9 33 33 H 1.09010 * 110.91897 * 97.86804 * 11 10 9 34 34 H 1.08998 * 110.75914 * 329.87102 * 13 12 11 35 35 H 1.08995 * 110.92317 * 206.55543 * 13 12 11 36 36 H 1.08999 * 109.86450 * 261.06618 * 14 13 12 37 37 H 1.08995 * 109.87076 * 139.95153 * 14 13 12 38 38 H 1.07993 * 126.18758 * 0.02562 * 19 18 16 39 39 H 1.08008 * 122.68105 * 0.33081 * 21 20 19 40 40 H 1.08000 * 124.37960 * 180.02562 * 22 21 20 41 41 H 1.08995 * 110.40084 * 96.37336 * 27 15 14 42 42 H 1.09002 * 110.40566 * 218.79294 * 27 15 14 43 43 H 1.08997 * 110.40212 * 83.35470 * 28 9 7 44 44 H 1.09006 * 110.39869 * 320.94142 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1390 -2.5314 0.0005 11 6 -0.4542 -4.0455 -0.0223 12 6 0.8475 -4.6531 -0.5576 13 6 1.0312 -6.1102 -0.1174 14 6 0.3043 -6.8971 -1.2330 15 7 0.2165 -6.0140 -2.4070 16 6 -0.3644 -6.3270 -3.5822 17 8 -0.3785 -5.5155 -4.4894 18 6 -0.9839 -7.6418 -3.7659 19 6 -1.6095 -8.0746 -4.8947 20 6 -2.0625 -9.4012 -4.6541 21 6 -2.7722 -10.4877 -5.3140 22 6 -2.9345 -11.5669 -4.5748 23 16 -2.2291 -11.3586 -2.9830 24 6 -1.6960 -9.7251 -3.3619 25 7 -1.0364 -8.6474 -2.8206 26 1 -0.6688 -8.6010 -1.9242 27 6 0.8752 -4.7301 -2.0881 28 6 1.9363 -3.7339 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5583 -2.0525 -0.8843 31 1 -0.5576 -2.0794 0.8998 32 1 -1.2850 -4.2571 -0.6955 33 1 -0.6685 -4.4136 0.9812 34 1 0.5584 -6.2843 0.8492 35 1 2.0877 -6.3760 -0.0826 36 1 -0.6966 -7.1720 -0.9004 37 1 0.8721 -7.7928 -1.4847 38 1 -1.7361 -7.5134 -5.8086 39 1 -3.1369 -10.4151 -6.3281 40 1 -3.4368 -12.4635 -4.9066 41 1 1.9024 -4.7293 -2.4525 42 1 0.3172 -3.8992 -2.5198 43 1 2.2009 -4.0311 1.0153 44 1 2.8157 -3.7521 -0.6432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041522429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:30 Heat of formation + Delta-G solvation = 60.210264 kcal Electronic energy + Delta-G solvation = -27627.709828 eV Core-core repulsion = 23865.705216 eV Total energy + Delta-G solvation = -3762.004612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.58285 -41.25293 -39.61064 -37.39562 -36.30070 -34.53652 -32.33532 -31.65663 -30.78682 -30.35115 -29.32973 -27.36487 -26.05087 -24.42928 -23.61559 -23.02774 -22.17801 -21.29381 -20.42818 -20.25904 -19.37687 -18.78393 -17.76857 -17.26630 -16.78810 -16.70962 -16.21675 -15.90271 -15.79534 -15.65667 -15.45028 -14.99689 -14.77450 -14.55097 -14.37206 -14.08559 -13.87629 -13.68449 -13.46278 -13.12750 -13.04729 -12.87630 -12.81371 -12.64955 -12.60719 -12.51636 -12.00239 -11.89211 -11.75627 -11.63567 -11.47954 -11.40007 -11.29050 -10.72758 -10.59322 -9.90989 -9.29708 -8.89942 -8.63964 -7.85838 -5.20863 0.07950 0.14637 0.42360 1.07389 1.43827 1.45282 1.55163 1.63571 1.77734 2.12508 2.25858 2.48337 3.19593 3.33859 3.38445 3.59139 3.61922 3.75435 3.79680 4.00013 4.03037 4.15503 4.24312 4.37553 4.41798 4.55891 4.62635 4.64575 4.71925 4.76324 4.78946 4.90630 4.94896 4.97755 5.07040 5.17192 5.20969 5.25783 5.31109 5.42275 5.45563 5.62987 5.63767 5.75751 6.11459 6.18491 6.27461 6.84145 7.09144 7.77212 8.40856 9.24775 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.002286 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.968622 B =12245.341291 C =12715.414592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.086 0.914 9 N -0.628 5.628 10 C 0.187 3.813 11 C -0.112 4.112 12 C -0.073 4.073 13 C -0.100 4.100 14 C 0.083 3.917 15 N -0.612 5.612 16 C 0.595 3.405 17 O -0.572 6.572 18 C -0.015 4.015 19 C -0.083 4.083 20 C -0.182 4.182 21 C -0.088 4.088 22 C -0.211 4.211 23 S 0.166 5.834 24 C -0.022 4.022 25 N -0.518 5.518 26 H 0.432 0.568 27 C 0.135 3.865 28 C 0.148 3.852 29 H 0.244 0.756 30 H -0.003 1.003 31 H 0.007 0.993 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.203 0.797 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.046 0.954 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 -29.965 -3.192 30.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.104 0.896 9 N -0.354 5.354 10 C 0.062 3.938 11 C -0.150 4.150 12 C -0.074 4.074 13 C -0.138 4.138 14 C -0.039 4.039 15 N -0.344 5.344 16 C 0.385 3.615 17 O -0.452 6.452 18 C -0.128 4.128 19 C -0.111 4.111 20 C -0.195 4.195 21 C -0.118 4.118 22 C -0.345 4.345 23 S 0.419 5.581 24 C -0.252 4.252 25 N -0.128 5.128 26 H 0.278 0.722 27 C 0.013 3.987 28 C 0.023 3.977 29 H 0.053 0.947 30 H 0.015 0.985 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.170 0.830 39 H 0.180 0.820 40 H 0.220 0.780 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.521 -30.196 -2.332 30.489 hybrid contribution 0.198 2.894 -1.117 3.108 sum -3.323 -27.302 -3.450 27.719 Atomic orbital electron populations 1.70216 1.06397 1.24994 1.58758 1.25669 0.96575 1.01163 1.03023 0.85030 0.78374 0.79587 0.76500 1.18626 1.22471 1.21901 1.19511 0.91084 0.83686 1.42155 0.89606 1.44898 1.02153 1.01316 1.87047 1.20915 0.83982 0.91774 0.97122 1.22486 0.96102 0.95193 1.01245 1.21488 0.96552 0.96584 0.92817 1.22446 1.02981 0.89980 0.98377 1.22630 1.01953 0.94063 0.85219 1.48595 1.55847 1.17131 1.12866 1.16944 0.77742 0.85418 0.81353 1.90863 1.61302 1.50696 1.42357 1.19601 1.11204 0.89901 0.92074 1.20895 0.98736 0.93784 0.97699 1.19713 1.08875 0.96468 0.94424 1.20539 0.99116 0.90469 1.01678 1.25328 1.08707 1.04016 0.96405 1.83863 1.58781 1.00339 1.15123 1.24103 1.05772 0.97201 0.98084 1.42017 1.46635 1.09405 1.14734 0.72206 1.21834 0.96944 0.84607 0.95289 1.21452 0.94269 0.83643 0.98355 0.94652 0.98474 0.97483 0.92232 0.89240 0.86790 0.87747 0.89620 0.88491 0.83033 0.82040 0.78028 0.90978 0.93942 0.93591 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.21 10.30 21.65 0.22 -58.99 16 2 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 3 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.19 10.28 84.03 0.86 -12.32 16 8 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.63 -31.70 3.41 -693.66 -2.37 -34.07 16 10 C 0.19 9.35 5.38 86.82 0.47 9.82 16 11 C -0.11 -3.92 5.92 31.26 0.19 -3.73 16 12 C -0.07 -2.18 0.62 -51.87 -0.03 -2.21 16 13 C -0.10 -1.75 5.97 31.27 0.19 -1.56 16 14 C 0.08 1.40 5.09 86.82 0.44 1.84 16 15 N -0.61 -16.97 3.34 -817.93 -2.73 -19.71 16 16 C 0.60 19.13 7.81 86.40 0.68 19.81 16 17 O -0.57 -23.65 17.13 -4.42 -0.08 -23.73 16 18 C -0.01 -0.38 6.82 39.81 0.27 -0.11 16 19 C -0.08 -2.12 10.59 22.77 0.24 -1.88 16 20 C -0.18 -3.89 6.80 -20.41 -0.14 -4.03 16 21 C -0.09 -1.32 10.42 23.39 0.24 -1.07 16 22 C -0.21 -2.29 11.03 67.04 0.74 -1.55 16 23 S 0.17 2.04 23.24 -56.49 -1.31 0.73 16 24 C -0.02 -0.42 8.41 83.80 0.70 0.28 16 25 N -0.52 -9.93 5.69 -179.04 -1.02 -10.94 16 26 H 0.43 5.82 4.83 -92.71 -0.45 5.37 16 27 C 0.14 4.56 5.87 86.22 0.51 5.06 16 28 C 0.15 5.45 6.28 86.14 0.54 5.99 16 29 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.00 -0.18 7.39 -2.39 -0.02 -0.20 16 31 H 0.01 0.39 7.49 -2.39 -0.02 0.37 16 32 H 0.06 2.08 8.01 -2.39 -0.02 2.06 16 33 H 0.09 2.65 7.82 -2.38 -0.02 2.63 16 34 H 0.11 1.51 7.78 -2.39 -0.02 1.49 16 35 H 0.10 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.09 1.17 7.06 -2.39 -0.02 1.16 16 37 H 0.10 1.11 7.21 -2.39 -0.02 1.09 16 38 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.07 2.39 7.85 -2.39 -0.02 2.37 16 42 H 0.04 1.82 7.95 -2.39 -0.02 1.80 16 43 H 0.05 1.56 8.07 -2.39 -0.02 1.54 16 44 H 0.05 1.65 7.80 -2.38 -0.02 1.64 16 Total: -1.00 -79.20 364.41 1.70 -77.51 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.59 Total: 9.73 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.36 Total: 10.62 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.89 Total: -123.70 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.08 Total: -23.73 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -79.20 1.70 -77.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041522429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.716 kcal (2) G-P(sol) polarization free energy of solvation -79.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds