Wall clock time and date at job start Wed Apr 1 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99567 * 2 1 4 4 H 1.48500 * 109.46803 * 269.99386 * 3 2 1 5 5 H 1.48493 * 109.47313 * 29.99854 * 3 2 1 6 6 H 1.48501 * 109.46776 * 149.99963 * 3 2 1 7 7 C 1.38809 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00068 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.39553 * 0.02562 * 9 7 2 11 11 C 1.55301 * 107.04516 * 184.98388 * 10 9 7 12 12 C 1.53702 * 101.81117 * 22.44234 * 11 10 9 13 13 H 1.09007 * 111.11013 * 78.61163 * 12 11 10 14 14 C 1.51979 * 114.99824 * 206.55033 * 12 11 10 15 15 C 1.53493 * 107.37389 * 175.29236 * 14 12 11 16 16 N 1.46593 * 110.93083 * 308.44435 * 15 14 12 17 17 C 1.34778 * 119.75832 * 227.67796 * 16 15 14 18 18 O 1.21731 * 120.00754 * 179.97438 * 17 16 15 19 19 C 1.46456 * 119.99707 * 359.93290 * 17 16 15 20 20 C 1.37468 * 125.80806 * 152.23255 * 19 17 16 21 21 C 1.40658 * 107.55616 * 179.97438 * 20 19 17 22 22 S 1.76019 * 142.39396 * 179.97438 * 21 20 19 23 23 C 1.75604 * 91.30695 * 179.44112 * 22 21 20 24 24 C 1.32774 * 110.47408 * 0.38483 * 23 22 21 25 25 C 1.38246 * 108.03198 * 359.73447 * 21 20 19 26 26 N 1.37916 * 125.80255 * 332.22724 * 19 17 16 27 27 H 0.96991 * 125.69090 * 0.02562 * 26 19 17 28 28 C 1.47801 * 120.49070 * 47.40967 * 16 15 14 29 29 C 1.45503 * 126.40041 * 180.02562 * 9 7 2 30 30 H 1.09007 * 109.55952 * 265.85966 * 29 9 7 31 31 H 0.96999 * 120.00408 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.92513 * 304.33269 * 10 9 7 33 33 H 1.09001 * 109.91947 * 65.63521 * 10 9 7 34 34 H 1.08995 * 110.95872 * 140.57675 * 11 10 9 35 35 H 1.08997 * 110.96194 * 264.31738 * 11 10 9 36 36 H 1.09003 * 109.89074 * 294.87736 * 14 12 11 37 37 H 1.09006 * 109.89195 * 55.90172 * 14 12 11 38 38 H 1.09001 * 109.18769 * 188.02023 * 15 14 12 39 39 H 1.08999 * 109.05146 * 68.78208 * 15 14 12 40 40 H 1.07999 * 126.21679 * 359.97438 * 20 19 17 41 41 H 1.08005 * 124.76357 * 179.97438 * 23 22 21 42 42 H 1.08004 * 122.16143 * 179.63035 * 24 23 22 43 43 H 1.08997 * 110.06599 * 68.21024 * 28 16 15 44 44 H 1.08996 * 110.06833 * 189.66949 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1466 -2.5532 -0.0005 11 6 -0.4342 -4.0739 0.1289 12 6 0.8679 -4.5874 0.7639 13 1 0.8905 -4.3819 1.8342 14 6 1.1976 -6.0410 0.4670 15 6 2.5751 -6.3326 1.0780 16 7 3.5602 -5.3356 0.6486 17 6 4.7634 -5.7370 0.1930 18 8 5.5847 -4.9130 -0.1652 19 6 5.0833 -7.1649 0.1298 20 6 5.9615 -7.7542 -0.7484 21 6 5.9760 -9.1334 -0.4724 22 16 6.7063 -10.6506 -0.9854 23 6 5.8198 -11.5390 0.2428 24 6 5.0486 -10.7172 0.9447 25 6 5.1084 -9.3688 0.5779 26 7 4.5546 -8.1468 0.9412 27 1 3.9075 -8.0073 1.6501 28 6 3.2416 -3.8934 0.7059 29 6 1.9083 -3.7213 0.0016 30 1 1.9873 -4.0859 -1.0227 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5809 -2.0199 0.8451 33 1 -0.5621 -2.1749 -0.9346 34 1 -1.2858 -4.2552 0.7846 35 1 -0.5949 -4.5251 -0.8502 36 1 0.4462 -6.6908 0.9157 37 1 1.2301 -6.2013 -0.6107 38 1 2.9049 -7.3223 0.7620 39 1 2.4939 -6.3120 2.1648 40 1 6.5358 -7.2499 -1.5114 41 1 5.8871 -12.6054 0.4005 42 1 4.4159 -11.0673 1.7470 43 1 3.1608 -3.5693 1.7434 44 1 4.0138 -3.3192 0.1941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042299172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:49 Heat of formation + Delta-G solvation = 90.034809 kcal Electronic energy + Delta-G solvation = -27992.253163 eV Core-core repulsion = 24231.541840 eV Total energy + Delta-G solvation = -3760.711323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.76798 -39.89847 -38.21784 -35.80452 -35.33601 -32.98508 -31.56452 -31.12837 -29.92003 -28.70725 -27.97843 -24.96158 -24.36301 -23.30328 -22.46275 -21.96897 -20.88307 -20.08315 -19.71299 -19.27899 -18.10127 -16.86353 -16.51608 -15.88851 -15.74664 -15.53419 -14.86356 -14.65906 -14.44723 -14.37757 -14.19468 -13.88427 -13.62993 -13.35100 -13.11029 -13.00599 -12.77615 -12.39060 -12.10104 -11.95424 -11.86313 -11.55617 -11.35100 -11.08785 -10.98901 -10.86503 -10.78647 -10.18929 -10.06819 -10.02308 -10.00241 -9.86754 -9.68723 -9.55145 -8.67406 -8.62971 -8.28493 -7.89697 -6.89353 -5.74566 -3.08738 0.55640 1.29530 1.79651 1.84662 2.49805 2.55586 2.87516 3.28539 3.40799 3.46526 3.47934 4.36199 4.47325 4.49046 4.63554 4.73152 4.84370 4.98046 5.07990 5.16777 5.29649 5.32408 5.49476 5.53916 5.58116 5.67674 5.68729 5.74248 5.82278 5.91767 5.96892 6.02886 6.08916 6.23714 6.28885 6.34311 6.43988 6.48458 6.62106 6.66526 6.97324 7.02647 7.36129 7.51727 7.56816 7.78166 8.09148 8.20014 9.16062 9.78967 10.44977 11.37723 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.002596 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.177987 B =10783.353753 C =11719.756603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.078 0.922 14 C -0.117 4.117 15 C 0.085 3.915 16 N -0.599 5.599 17 C 0.580 3.420 18 O -0.519 6.519 19 C 0.022 3.978 20 C -0.080 4.080 21 C -0.214 4.214 22 S 0.128 5.872 23 C -0.192 4.192 24 C -0.112 4.112 25 C 0.054 3.946 26 N -0.543 5.543 27 H 0.423 0.577 28 C 0.117 3.883 29 C 0.156 3.844 30 H 0.025 0.975 31 H 0.252 0.748 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.140 0.860 43 H 0.074 0.926 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.166 -24.578 3.133 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.156 4.156 15 C -0.038 4.038 16 N -0.333 5.333 17 C 0.367 3.633 18 O -0.395 6.395 19 C -0.092 4.092 20 C -0.110 4.110 21 C -0.334 4.334 22 S 0.388 5.612 23 C -0.328 4.328 24 C -0.146 4.146 25 C -0.063 4.063 26 N -0.151 5.151 27 H 0.267 0.733 28 C -0.004 4.004 29 C 0.047 3.953 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.173 0.827 41 H 0.189 0.811 42 H 0.158 0.842 43 H 0.092 0.908 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.445 -24.201 1.985 25.398 hybrid contribution -1.074 1.271 1.484 2.230 sum 6.370 -22.930 3.470 24.050 Atomic orbital electron populations 1.69938 1.04916 1.25138 1.56882 1.24786 0.95686 0.97693 1.02023 0.86137 0.78678 0.83423 0.77684 1.21528 1.21699 1.20537 1.19047 0.90460 0.82216 1.44067 0.90208 1.44163 1.01633 0.99112 1.86704 1.21554 0.83655 0.88425 1.01073 1.22729 0.95874 0.99709 0.99282 1.22288 0.97677 0.93171 1.00279 0.90387 1.21700 0.94603 0.97753 1.01496 1.22161 0.90447 0.91851 0.99375 1.48233 1.13411 1.08345 1.63275 1.17076 0.82373 0.85635 0.78234 1.90889 1.47800 1.52515 1.48289 1.20378 1.01953 0.88656 0.98228 1.20390 0.99995 0.89657 1.01000 1.22680 1.07438 0.98725 1.04588 1.83934 1.46766 0.94758 1.35757 1.25220 1.02909 1.03470 1.01227 1.18885 1.03481 0.88828 1.03370 1.18422 1.00623 0.87855 0.99435 1.42847 1.37059 1.04274 1.30954 0.73266 1.21808 0.99394 0.77462 1.01758 1.20980 0.90830 0.87767 0.95709 0.95773 0.93722 0.92566 0.94347 0.92181 0.92510 0.90673 0.91136 0.89735 0.91371 0.82669 0.81109 0.84202 0.90786 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.44 55.49 0.58 -26.16 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.29 9.88 -15.06 -0.15 -6.44 16 8 H 0.08 2.14 7.41 -52.49 -0.39 1.75 16 9 N -0.59 -14.63 3.35 -162.93 -0.55 -15.17 16 10 C 0.18 4.16 5.45 -1.91 -0.01 4.15 16 11 C -0.14 -2.42 6.54 -25.15 -0.16 -2.59 16 12 C -0.11 -1.85 2.62 -89.52 -0.23 -2.08 16 13 H 0.08 1.29 8.13 -51.92 -0.42 0.87 16 14 C -0.12 -1.42 5.70 -26.99 -0.15 -1.57 16 15 C 0.09 0.95 5.16 -3.74 -0.02 0.93 16 16 N -0.60 -8.99 3.01 -174.62 -0.53 -9.52 16 17 C 0.58 9.30 7.59 -12.95 -0.10 9.20 16 18 O -0.52 -10.24 16.35 5.16 0.08 -10.15 16 19 C 0.02 0.30 6.30 -82.10 -0.52 -0.22 16 20 C -0.08 -1.04 10.71 -38.95 -0.42 -1.46 16 21 C -0.21 -2.48 7.26 -38.67 -0.28 -2.76 16 22 S 0.13 1.14 23.31 -107.50 -2.51 -1.36 16 23 C -0.19 -1.37 11.13 28.86 0.32 -1.05 16 24 C -0.11 -0.89 10.16 -40.85 -0.42 -1.30 16 25 C 0.05 0.57 7.67 -84.00 -0.64 -0.08 16 26 N -0.54 -5.59 4.83 -7.34 -0.04 -5.62 16 27 H 0.42 3.31 6.36 -40.82 -0.26 3.05 16 28 C 0.12 2.17 5.69 -3.96 -0.02 2.14 16 29 C 0.16 3.13 2.77 -67.85 -0.19 2.94 16 30 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.46 7.21 -51.93 -0.37 1.08 16 33 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 38 H 0.09 0.79 4.05 -51.93 -0.21 0.58 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.17 0.71 8.06 -52.48 -0.42 0.28 16 42 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.10 2.01 6.76 -51.93 -0.35 1.66 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -32.47 359.01 -11.40 -43.87 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.75 Total: 1.99 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -3.09 Total: -0.45 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.53 Total: -56.47 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.47 -11.40 -43.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042299172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.909 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds