Wall clock time and date at job start Wed Apr 1 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.45844 * 2 1 4 4 C 1.34779 * 120.00147 * 60.02692 * 3 2 1 5 5 O 1.21610 * 119.99928 * 359.97438 * 4 3 2 6 6 C 1.47379 * 119.99978 * 180.02562 * 4 3 2 7 7 N 1.29689 * 121.83008 * 359.97438 * 6 4 3 8 8 S 1.56006 * 111.74175 * 180.02562 * 7 6 4 9 9 C 1.76257 * 97.56220 * 359.97438 * 8 7 6 10 10 C 1.38696 * 134.18295 * 180.02562 * 9 8 7 11 11 C 1.36804 * 119.62307 * 180.02562 * 10 9 8 12 12 C 1.38905 * 120.31091 * 359.97438 * 11 10 9 13 13 C 1.36325 * 121.03338 * 0.25731 * 12 11 10 14 14 C 1.40418 * 119.96323 * 359.49845 * 13 12 11 15 15 C 1.53039 * 109.44665 * 119.96265 * 2 1 3 16 16 C 1.53196 * 109.30905 * 181.38057 * 15 2 1 17 17 N 1.46927 * 108.77654 * 305.36742 * 16 15 2 18 18 C 1.36941 * 120.62998 * 233.63206 * 17 16 15 19 19 H 1.07998 * 119.99890 * 27.65826 * 18 17 16 20 20 C 1.38812 * 120.00122 * 207.66025 * 18 17 16 21 21 N 1.31618 * 119.99819 * 17.36969 * 20 18 17 22 22 Si 1.86800 * 120.00094 * 197.37164 * 20 18 17 23 23 H 1.48500 * 109.46745 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46950 * 119.99585 * 22 20 18 25 25 H 1.48498 * 109.46865 * 239.99750 * 22 20 18 26 26 C 1.46919 * 118.73976 * 53.61006 * 17 16 15 27 27 C 1.53039 * 109.46104 * 240.02897 * 2 1 3 28 28 H 1.08994 * 109.47179 * 60.00426 * 1 2 3 29 29 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47345 * 300.00112 * 1 2 3 31 31 H 0.97004 * 119.99998 * 240.03113 * 3 2 1 32 32 H 1.08002 * 120.18944 * 359.97438 * 10 9 8 33 33 H 1.08004 * 119.84258 * 180.02562 * 11 10 9 34 34 H 1.08002 * 119.48250 * 179.97438 * 12 11 10 35 35 H 1.07999 * 120.01888 * 179.72159 * 13 12 11 36 36 H 1.09006 * 109.49884 * 301.32866 * 15 2 1 37 37 H 1.08997 * 109.50031 * 61.43112 * 15 2 1 38 38 H 1.09002 * 109.58526 * 185.57958 * 16 15 2 39 39 H 1.09001 * 109.58775 * 65.15576 * 16 15 2 40 40 H 0.96997 * 119.99931 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.58635 * 186.60649 * 26 17 16 42 42 H 1.08999 * 109.70771 * 66.24438 * 26 17 16 43 43 H 1.09001 * 109.49440 * 298.57580 * 27 2 1 44 44 H 1.08994 * 109.49868 * 58.63754 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6927 2.2110 1.0111 5 8 0.9937 1.8131 1.9232 6 6 2.1832 3.6008 1.0108 7 7 2.9301 4.0623 0.0563 8 16 3.3130 5.5560 0.2929 9 6 2.4571 5.7760 1.8179 10 6 2.2977 6.8410 2.6920 11 6 1.5479 6.6797 3.8248 12 6 0.9481 5.4575 4.1003 13 6 1.0955 4.3963 3.2574 14 6 1.8550 4.5329 2.0842 15 6 2.0395 -0.7207 1.2502 16 6 3.5711 -0.6888 1.2646 17 7 4.0676 -1.2492 0.0004 18 6 4.9754 -2.2745 0.0005 19 1 5.0080 -2.9667 0.8289 20 6 5.8536 -2.4242 -1.0640 21 7 6.0603 -1.4225 -1.8924 22 14 6.7421 -4.0472 -1.3207 23 1 6.3386 -5.0054 -0.2604 24 1 6.3844 -4.6022 -2.6509 25 1 8.2088 -3.8243 -1.2553 26 6 3.5715 -0.6889 -1.2639 27 6 2.0399 -0.7208 -1.2500 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.5753 1.6988 -0.7278 32 1 2.7636 7.7921 2.4800 33 1 1.4211 7.5068 4.5078 34 1 0.3593 5.3449 4.9988 35 1 0.6255 3.4522 3.4899 36 1 1.6569 -0.2205 2.1399 37 1 1.6973 -1.7555 1.2385 38 1 3.9412 -1.2847 2.0988 39 1 3.9142 0.3407 1.3677 40 1 6.6737 -1.5272 -2.6365 41 1 3.9418 -1.2850 -2.0980 42 1 3.9144 0.3403 -1.3696 43 1 1.6977 -1.7557 -1.2382 44 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045449517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:04 Heat of formation + Delta-G solvation = 27.164366 kcal Electronic energy + Delta-G solvation = -28299.295236 eV Core-core repulsion = 24535.857646 eV Total energy + Delta-G solvation = -3763.437590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91736 -40.72954 -38.89494 -37.87755 -36.16309 -33.73295 -32.49834 -32.08194 -31.64793 -31.53320 -29.12209 -27.19437 -25.94339 -24.15510 -24.01640 -23.59024 -22.60558 -21.54588 -20.32708 -19.60791 -18.93483 -18.53038 -17.32745 -16.88305 -16.70047 -16.27130 -16.18855 -15.92735 -15.68227 -15.43183 -15.25143 -15.08002 -14.85480 -14.69806 -14.55821 -14.07408 -13.37212 -13.35965 -13.13048 -13.10243 -13.06182 -12.88243 -12.66486 -12.63632 -12.58447 -12.32502 -12.16977 -12.02057 -11.79721 -11.70769 -11.40672 -11.35734 -10.85297 -10.65753 -10.56420 -10.09018 -10.05106 -8.92706 -8.70145 -7.89490 -5.34572 -0.74888 0.07211 0.29030 0.59770 0.65592 1.44487 1.46387 1.57272 1.99818 2.09953 2.49517 2.67790 3.22872 3.25229 3.52752 3.66359 3.78502 3.94312 4.00979 4.09115 4.09574 4.34455 4.42144 4.44121 4.53908 4.60088 4.69614 4.73957 4.81982 4.85885 4.87705 4.93731 4.99345 5.11474 5.15059 5.19027 5.25786 5.33111 5.38241 5.43106 5.48120 5.60238 5.62201 5.71684 5.86385 6.36304 6.48726 7.07089 7.12745 7.82524 8.35544 9.16713 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.003109 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.510513 B = 9004.459607 C = 9676.339291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.183 3.817 3 N -0.690 5.690 4 C 0.587 3.413 5 O -0.542 6.542 6 C 0.068 3.932 7 N -0.517 5.517 8 S 0.418 5.582 9 C -0.212 4.212 10 C -0.074 4.074 11 C -0.079 4.079 12 C -0.111 4.111 13 C -0.066 4.066 14 C -0.114 4.114 15 C -0.129 4.129 16 C 0.152 3.848 17 N -0.605 5.605 18 C -0.264 4.264 19 H 0.063 0.937 20 C -0.048 4.048 21 N -0.932 5.932 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.293 1.293 26 C 0.180 3.820 27 C -0.131 4.131 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.405 0.595 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.045 0.955 39 H -0.004 1.004 40 H 0.250 0.750 41 H 0.058 0.942 42 H -0.003 1.003 43 H 0.077 0.923 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 18.757 8.562 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.098 3.902 3 N -0.341 5.341 4 C 0.369 3.631 5 O -0.420 6.420 6 C -0.119 4.119 7 N -0.344 5.344 8 S 0.578 5.422 9 C -0.333 4.333 10 C -0.096 4.096 11 C -0.102 4.102 12 C -0.130 4.130 13 C -0.088 4.088 14 C -0.124 4.124 15 C -0.169 4.169 16 C 0.026 3.974 17 N -0.329 5.329 18 C -0.394 4.394 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.796 3.204 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.221 1.221 26 C 0.054 3.946 27 C -0.171 4.171 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.241 0.759 32 H 0.183 0.817 33 H 0.194 0.806 34 H 0.180 0.820 35 H 0.151 0.849 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.014 0.986 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.015 0.985 43 H 0.096 0.904 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.668 18.819 7.169 23.274 hybrid contribution 0.324 -1.502 0.398 1.587 sum -11.344 17.317 7.567 22.041 Atomic orbital electron populations 1.22117 0.92764 1.03158 1.02691 1.20361 0.94426 0.79469 0.95921 1.46062 1.51798 1.11823 1.24390 1.17310 0.80115 0.83269 0.82381 1.90650 1.39022 1.76112 1.36183 1.22039 1.00481 0.96857 0.92536 1.71263 1.17409 1.16087 1.29684 1.81069 1.46843 1.01080 1.13172 1.24564 1.05700 0.98738 1.04344 1.20445 0.99225 0.97072 0.92879 1.21579 0.94050 0.98289 0.96240 1.21319 0.99514 0.92246 0.99935 1.20903 0.95907 1.00877 0.91134 1.19756 1.03322 0.91847 0.97447 1.22246 0.96127 1.00351 0.98185 1.20850 0.93224 0.94612 0.88669 1.44285 1.48345 1.39500 1.00755 1.19529 1.10235 1.03460 1.06176 0.91881 1.25772 0.98249 1.00466 0.99896 1.70192 1.38564 1.30696 1.18374 0.85206 0.77503 0.80021 0.77692 1.19253 1.21356 1.22063 1.20547 0.89872 0.95102 0.89044 1.22333 0.97682 1.00812 0.96245 0.92055 0.90447 0.91492 0.75935 0.81663 0.80647 0.82048 0.84872 0.90520 0.91054 0.93616 0.98629 0.94088 0.92326 0.98518 0.90445 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 8.40 71.98 0.60 -3.74 16 2 C 0.18 6.37 0.66 3.63 0.00 6.38 16 3 N -0.69 -24.64 4.09 -426.07 -1.74 -26.38 16 4 C 0.59 20.80 7.22 86.65 0.63 21.42 16 5 O -0.54 -19.72 11.23 -4.06 -0.05 -19.76 16 6 C 0.07 2.23 6.82 43.85 0.30 2.53 16 7 N -0.52 -16.47 10.49 -64.54 -0.68 -17.15 16 8 S 0.42 9.87 23.36 -56.49 -1.32 8.55 16 9 C -0.21 -4.75 6.73 22.97 0.15 -4.59 16 10 C -0.07 -1.07 10.03 22.04 0.22 -0.85 16 11 C -0.08 -0.90 10.00 22.09 0.22 -0.67 16 12 C -0.11 -1.68 9.93 21.98 0.22 -1.46 16 13 C -0.07 -1.56 9.57 22.35 0.21 -1.34 16 14 C -0.11 -3.16 6.10 -20.17 -0.12 -3.28 16 15 C -0.13 -4.92 4.67 30.67 0.14 -4.78 16 16 C 0.15 6.99 6.26 86.36 0.54 7.53 16 17 N -0.61 -31.43 2.99 -699.08 -2.09 -33.53 16 18 C -0.26 -14.93 9.59 84.03 0.81 -14.12 16 19 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 20 C -0.05 -2.74 4.91 84.86 0.42 -2.32 16 21 N -0.93 -55.62 11.19 21.65 0.24 -55.38 16 22 Si 0.97 45.55 29.59 68.60 2.03 47.57 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 C 0.18 8.70 5.03 86.37 0.43 9.14 16 27 C -0.13 -4.88 4.96 30.67 0.15 -4.73 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.07 6.16 -2.38 -0.01 2.06 16 31 H 0.40 15.05 6.71 -92.71 -0.62 14.43 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 34 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.13 3.45 6.64 -2.91 -0.02 3.43 16 36 H 0.08 2.90 6.20 -2.38 -0.01 2.88 16 37 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.05 2.09 7.93 -2.39 -0.02 2.08 16 39 H 0.00 -0.21 7.74 -2.39 -0.02 -0.23 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 41 H 0.06 3.20 6.03 -2.38 -0.01 3.18 16 42 H 0.00 -0.16 6.94 -2.39 -0.02 -0.18 16 43 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -70.33 360.57 1.74 -68.58 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.42 Total: 22.40 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 4.93 Total: 5.09 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -4.27 Total: -132.44 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 9.87 SS G_CDS: -1.32 Total: 8.55 kcal Total: -70.33 1.74 -68.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045449517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.747 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds