Wall clock time and date at job start Wed Apr 1 2020 03:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46288 * 2 1 4 4 C 1.34782 * 119.99536 * 60.00043 * 3 2 1 5 5 O 1.21573 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.47658 * 119.99676 * 180.02562 * 4 3 2 7 7 C 1.40165 * 119.85669 * 359.97438 * 6 4 3 8 8 C 1.36217 * 120.07741 * 180.27458 * 7 6 4 9 9 C 1.39588 * 120.43547 * 359.47555 * 8 7 6 10 10 S 1.76141 * 131.53268 * 180.23624 * 9 8 7 11 11 C 1.70630 * 90.85652 * 180.26267 * 10 9 8 12 12 N 1.27844 * 111.58612 * 0.02562 * 11 10 9 13 13 C 1.34742 * 117.84181 * 359.97438 * 12 11 10 14 14 C 1.38717 * 119.85785 * 180.02562 * 6 4 3 15 15 C 1.53039 * 109.45765 * 119.97269 * 2 1 3 16 16 C 1.53165 * 109.32904 * 181.38525 * 15 2 1 17 17 N 1.46927 * 108.76733 * 305.35381 * 16 15 2 18 18 C 1.36940 * 120.63593 * 233.62710 * 17 16 15 19 19 H 1.07995 * 119.99718 * 151.81200 * 18 17 16 20 20 C 1.38808 * 119.99629 * 331.81763 * 18 17 16 21 21 N 1.31623 * 120.00258 * 343.07799 * 20 18 17 22 22 Si 1.86797 * 119.99839 * 163.07509 * 20 18 17 23 23 H 1.48499 * 109.47173 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46909 * 119.99897 * 22 20 18 25 25 H 1.48498 * 109.47396 * 239.99822 * 22 20 18 26 26 C 1.46928 * 118.73665 * 53.60890 * 17 16 15 27 27 C 1.53040 * 109.46403 * 240.02610 * 2 1 3 28 28 H 1.09000 * 109.46780 * 59.99786 * 1 2 3 29 29 H 1.08996 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46897 * 300.00135 * 1 2 3 31 31 H 0.96997 * 120.00268 * 239.99677 * 3 2 1 32 32 H 1.07997 * 119.96165 * 0.02562 * 7 6 4 33 33 H 1.08004 * 119.78089 * 179.74035 * 8 7 6 34 34 H 1.08000 * 124.20596 * 180.02562 * 11 10 9 35 35 H 1.07999 * 119.97461 * 359.97438 * 14 6 4 36 36 H 1.08994 * 109.50124 * 301.32604 * 15 2 1 37 37 H 1.09006 * 109.49810 * 61.42465 * 15 2 1 38 38 H 1.08998 * 109.59254 * 185.57393 * 16 15 2 39 39 H 1.08998 * 109.71043 * 65.21018 * 16 15 2 40 40 H 0.97003 * 120.00068 * 180.02562 * 21 20 18 41 41 H 1.08995 * 109.58659 * 186.60043 * 26 17 16 42 42 H 1.09007 * 109.70403 * 66.24796 * 26 17 16 43 43 H 1.09003 * 109.49836 * 298.58844 * 27 2 1 44 44 H 1.09003 * 109.49690 * 58.64509 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6924 2.2110 1.0109 5 8 0.9931 1.8134 1.9225 6 6 2.1839 3.6034 1.0107 7 6 2.9894 4.0588 -0.0421 8 6 3.4500 5.3408 -0.0440 9 6 3.1163 6.2136 0.9930 10 16 3.5350 7.9002 1.2802 11 6 2.6435 7.9004 2.7351 12 7 2.1064 6.7618 2.9578 13 6 2.3129 5.7816 2.0566 14 6 1.8473 4.4548 2.0528 15 6 2.0398 -0.7209 1.2500 16 6 3.5711 -0.6890 1.2646 17 7 4.0676 -1.2494 0.0005 18 6 4.9753 -2.2748 0.0006 19 1 5.0026 -2.9718 -0.8239 20 6 5.8602 -2.4182 1.0604 21 7 6.0654 -1.4145 1.8868 22 14 6.7597 -4.0356 1.3138 23 1 6.3563 -4.9972 0.2566 24 1 8.2247 -3.8040 1.2401 25 1 6.4129 -4.5914 2.6464 26 6 3.5714 -0.6891 -1.2639 27 6 2.0400 -0.7209 -1.2499 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5758 1.6986 -0.7274 32 1 3.2487 3.3914 -0.8506 33 1 4.0738 5.6855 -0.8555 34 1 2.5453 8.7559 3.3869 35 1 1.2266 4.0985 2.8616 36 1 1.6574 -0.2209 2.1398 37 1 1.6976 -1.7558 1.2382 38 1 3.9411 -1.2850 2.0988 39 1 3.9163 0.3396 1.3689 40 1 6.6841 -1.5146 2.6272 41 1 3.9417 -1.2851 -2.0980 42 1 3.9146 0.3401 -1.3695 43 1 1.6976 -1.7557 -1.2383 44 1 1.6571 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045606657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:31 Heat of formation + Delta-G solvation = 30.064976 kcal Electronic energy + Delta-G solvation = -28114.019445 eV Core-core repulsion = 24350.707636 eV Total energy + Delta-G solvation = -3763.311810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91026 -41.05673 -39.04177 -37.65063 -36.14492 -33.77324 -32.80868 -32.10546 -31.59871 -30.73344 -29.06757 -26.29121 -25.94504 -25.10637 -23.92153 -23.26381 -22.66168 -21.50292 -20.18751 -19.84162 -18.81641 -18.29242 -17.37867 -17.16068 -16.83810 -16.30500 -16.07259 -15.81101 -15.66950 -15.46695 -15.17361 -15.03090 -14.84370 -14.77871 -14.57692 -14.15069 -14.02167 -13.32395 -13.20150 -13.13427 -13.02650 -12.88675 -12.80240 -12.57720 -12.52957 -12.19654 -12.13510 -11.95032 -11.74815 -11.38235 -11.30635 -11.21252 -10.73624 -10.60732 -10.53170 -10.05440 -9.85518 -9.18810 -8.64722 -7.85651 -5.30973 -0.69927 -0.38079 0.19699 0.63172 1.18945 1.44665 1.47681 1.57177 1.81819 2.10958 2.51528 2.69221 2.99515 3.29620 3.46082 3.59571 3.74145 3.86444 3.93777 4.08136 4.08630 4.12386 4.15250 4.44138 4.51130 4.64140 4.69703 4.73147 4.79854 4.89884 4.95244 4.95975 5.00174 5.06427 5.08433 5.16842 5.23318 5.36954 5.39326 5.43907 5.52031 5.63607 5.67679 5.78210 6.40031 6.48974 6.61033 7.15990 7.24275 7.88944 8.40089 9.19973 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.002965 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.229480 B = 9441.193234 C =10409.419592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.187 3.813 3 N -0.695 5.695 4 C 0.558 3.442 5 O -0.567 6.567 6 C -0.125 4.125 7 C -0.071 4.071 8 C -0.068 4.068 9 C -0.185 4.185 10 S 0.163 5.837 11 C 0.070 3.930 12 N -0.501 5.501 13 C 0.050 3.950 14 C -0.022 4.022 15 C -0.140 4.140 16 C 0.193 3.807 17 N -0.607 5.607 18 C -0.256 4.256 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.263 1.263 24 H -0.293 1.293 25 H -0.297 1.297 26 C 0.139 3.861 27 C -0.124 4.124 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.408 0.592 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.244 0.756 35 H 0.129 0.871 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.038 0.962 39 H -0.007 1.007 40 H 0.246 0.754 41 H 0.062 0.938 42 H 0.025 0.975 43 H 0.075 0.925 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 19.360 -8.127 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.101 3.899 3 N -0.346 5.346 4 C 0.346 3.654 5 O -0.448 6.448 6 C -0.131 4.131 7 C -0.093 4.093 8 C -0.090 4.090 9 C -0.304 4.304 10 S 0.417 5.583 11 C -0.234 4.234 12 N -0.215 5.215 13 C -0.069 4.069 14 C -0.044 4.044 15 C -0.180 4.180 16 C 0.067 3.933 17 N -0.331 5.331 18 C -0.387 4.387 19 H 0.089 0.911 20 C -0.249 4.249 21 N -0.582 5.582 22 Si 0.791 3.209 23 H -0.187 1.187 24 H -0.220 1.220 25 H -0.224 1.224 26 C 0.014 3.986 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.180 0.820 33 H 0.189 0.811 34 H 0.260 0.740 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.011 0.989 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.098 19.803 -7.370 22.629 hybrid contribution 0.621 -1.662 0.891 1.985 sum -7.477 18.142 -6.479 20.664 Atomic orbital electron populations 1.22123 0.93459 1.02738 1.02639 1.20243 0.93961 0.79961 0.95702 1.45898 1.52575 1.11562 1.24605 1.18269 0.79796 0.85424 0.81912 1.90697 1.39769 1.77497 1.36818 1.19763 1.02383 0.93537 0.97428 1.21246 0.94517 0.96289 0.97292 1.20370 0.99609 0.91742 0.97255 1.24478 1.04279 1.00631 1.01037 1.83772 1.51250 1.02692 1.20554 1.28860 0.95733 0.98719 1.00109 1.66231 1.24375 1.00976 1.29879 1.19169 1.00938 0.94810 0.91977 1.20670 0.96649 0.89685 0.97408 1.22385 0.97782 0.99418 0.98437 1.20298 0.89509 0.94480 0.88985 1.44282 1.48186 1.39605 1.00983 1.19562 1.09176 1.03522 1.06395 0.91129 1.25785 0.98732 1.00137 1.00197 1.70210 1.38430 1.30827 1.18691 0.85280 0.77722 0.80456 0.77448 1.18700 1.21975 1.22397 1.21101 0.92656 0.96528 0.88334 1.22226 0.96823 1.01065 0.96185 0.90870 0.91128 0.92787 0.75406 0.82037 0.81079 0.74002 0.85338 0.92616 0.92490 0.94313 0.98922 0.94501 0.91997 0.95682 0.90669 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 8.40 71.98 0.60 -3.63 16 2 C 0.19 5.94 0.66 3.63 0.00 5.94 16 3 N -0.69 -20.68 4.05 -425.81 -1.73 -22.41 16 4 C 0.56 18.75 7.18 86.73 0.62 19.38 16 5 O -0.57 -22.86 12.51 -3.95 -0.05 -22.91 16 6 C -0.12 -3.62 5.86 -20.21 -0.12 -3.74 16 7 C -0.07 -1.55 9.47 22.27 0.21 -1.34 16 8 C -0.07 -1.27 9.99 22.12 0.22 -1.05 16 9 C -0.18 -4.01 6.56 23.05 0.15 -3.86 16 10 S 0.16 2.30 23.17 -56.49 -1.31 0.99 16 11 C 0.07 1.10 12.09 130.82 1.58 2.68 16 12 N -0.50 -12.66 10.57 -194.91 -2.06 -14.72 16 13 C 0.05 1.38 6.99 39.73 0.28 1.66 16 14 C -0.02 -0.69 9.65 22.97 0.22 -0.47 16 15 C -0.14 -5.80 4.66 30.66 0.14 -5.66 16 16 C 0.19 9.67 5.04 86.35 0.44 10.10 16 17 N -0.61 -29.43 2.99 -699.16 -2.09 -31.52 16 18 C -0.26 -13.83 9.58 84.03 0.81 -13.02 16 19 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 20 C -0.05 -3.00 4.92 84.86 0.42 -2.58 16 21 N -0.94 -56.50 11.20 21.65 0.24 -56.26 16 22 Si 0.96 45.31 29.59 68.60 2.03 47.34 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 C 0.14 5.05 6.24 86.36 0.54 5.59 16 27 C -0.12 -3.54 4.96 30.67 0.15 -3.39 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.77 6.16 -2.39 -0.01 1.75 16 31 H 0.41 10.00 5.27 -92.71 -0.49 9.51 16 32 H 0.16 2.64 6.37 -2.91 -0.02 2.62 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.24 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.13 4.31 7.60 -2.91 -0.02 4.29 16 36 H 0.06 2.48 6.20 -2.39 -0.01 2.46 16 37 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.04 2.27 6.06 -2.39 -0.01 2.25 16 39 H -0.01 -0.39 7.74 -2.39 -0.02 -0.41 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 42 H 0.03 0.86 6.94 -2.38 -0.02 0.84 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -75.77 360.96 1.86 -73.91 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.56 Total: 18.96 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.27 Total: 6.62 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -5.64 Total: -124.90 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.31 Total: 0.99 kcal Total: -75.77 1.86 -73.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045606657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.973 kcal (2) G-P(sol) polarization free energy of solvation -75.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds