Wall clock time and date at job start Wed Apr 1 2020 03:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38904 * 119.47973 * 2 1 4 4 C 1.36806 * 120.30268 * 180.02562 * 3 2 1 5 5 C 1.38693 * 119.63090 * 0.02562 * 4 3 2 6 6 S 1.76264 * 134.18236 * 180.02562 * 5 4 3 7 7 N 1.56007 * 97.55871 * 179.79580 * 6 5 4 8 8 C 1.29692 * 111.74559 * 0.36529 * 7 6 5 9 9 C 1.47368 * 121.82899 * 179.83864 * 8 7 6 10 10 O 1.21623 * 119.99808 * 179.71664 * 9 8 7 11 11 N 1.34773 * 120.00261 * 359.97438 * 9 8 7 12 12 C 1.46505 * 120.00095 * 179.72665 * 11 9 8 13 13 C 1.52989 * 110.88811 * 62.43067 * 12 11 9 14 14 C 1.55158 * 111.00342 * 186.35356 * 12 11 9 15 15 C 1.54324 * 102.94499 * 82.57230 * 14 12 11 16 16 N 1.47019 * 107.26926 * 22.19073 * 15 14 12 17 17 C 1.36938 * 125.64758 * 181.02266 * 16 15 14 18 18 H 1.07998 * 119.99968 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00205 * 0.04934 * 17 16 15 20 20 N 1.31618 * 119.99390 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00186 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47327 * 89.99328 * 21 19 17 23 23 H 1.48496 * 109.47090 * 209.99639 * 21 19 17 24 24 H 1.48507 * 109.47189 * 329.99500 * 21 19 17 25 25 C 1.47421 * 108.70742 * 1.05894 * 16 15 14 26 26 C 1.40678 * 120.67037 * 359.97438 * 5 4 3 27 27 C 1.36338 * 119.48428 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46377 * 269.97065 * 1 2 3 29 29 H 1.08991 * 109.47489 * 29.97320 * 1 2 3 30 30 H 1.09001 * 109.47039 * 149.97982 * 1 2 3 31 31 H 1.07995 * 119.84903 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.18289 * 180.02562 * 4 3 2 33 33 H 0.97000 * 120.00112 * 359.73100 * 11 9 8 34 34 H 1.09005 * 109.47369 * 60.69430 * 13 12 11 35 35 H 1.08997 * 109.47513 * 180.70137 * 13 12 11 36 36 H 1.09006 * 109.47134 * 300.70238 * 13 12 11 37 37 H 1.08995 * 110.72214 * 200.93597 * 14 12 11 38 38 H 1.09001 * 110.72149 * 324.21012 * 14 12 11 39 39 H 1.09008 * 109.88306 * 262.77638 * 15 14 12 40 40 H 1.08994 * 109.88349 * 141.60919 * 15 14 12 41 41 H 0.97003 * 119.99306 * 180.02562 * 20 19 17 42 42 H 1.08989 * 110.37364 * 217.03290 * 25 16 15 43 43 H 1.09008 * 110.45862 * 94.75358 * 25 16 15 44 44 H 1.07997 * 120.01521 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2092 0.0000 4 6 3.5585 1.2289 -0.0005 5 6 4.2614 0.0333 -0.0016 6 16 5.9737 -0.3850 -0.0020 7 7 5.8060 -1.9361 0.0021 8 6 4.5568 -2.2843 -0.0036 9 6 4.1443 -3.6991 -0.0048 10 8 2.9629 -3.9881 -0.0050 11 7 5.0762 -4.6727 -0.0004 12 6 4.6661 -6.0792 0.0045 13 6 3.8795 -6.4224 -1.2619 14 6 5.8924 -7.0155 0.1693 15 6 6.1232 -7.0175 1.6952 16 7 4.8545 -6.6301 2.3290 17 6 4.6439 -6.4934 3.6752 18 1 3.6707 -6.2036 4.0429 19 6 5.6816 -6.7268 4.5673 20 7 6.8676 -7.0800 4.1192 21 14 5.3942 -6.5410 6.4036 22 1 4.9473 -7.8395 6.9686 23 1 6.6576 -6.1230 7.0626 24 1 4.3491 -5.5126 6.6396 25 6 3.8462 -6.4141 1.2755 26 6 3.5821 -1.1986 -0.0016 27 6 2.1780 -1.1868 -0.0005 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6397 2.1381 0.0004 32 1 4.0880 2.1702 -0.0001 33 1 6.0185 -4.4423 -0.0004 34 1 4.5076 -6.2540 -2.1367 35 1 3.5757 -7.4687 -1.2287 36 1 2.9945 -5.7889 -1.3228 37 1 5.6618 -8.0194 -0.1871 38 1 6.7599 -6.6100 -0.3514 39 1 6.9012 -6.2989 1.9534 40 1 6.4129 -8.0151 2.0250 41 1 7.5926 -7.2435 4.7426 42 1 3.1958 -5.5798 1.5380 43 1 3.2578 -7.3185 1.1200 44 1 1.6299 -2.1173 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046537443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:19 Heat of formation + Delta-G solvation = 46.305349 kcal Electronic energy + Delta-G solvation = -28033.623524 eV Core-core repulsion = 24271.015950 eV Total energy + Delta-G solvation = -3762.607574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.68147 -39.46128 -37.61354 -36.77862 -33.95540 -32.78808 -31.86266 -30.90792 -29.99870 -28.67029 -27.23923 -26.04756 -25.58983 -23.70296 -23.14017 -21.69281 -20.51761 -19.98897 -19.15852 -18.43392 -17.56337 -16.75595 -16.30216 -15.51017 -15.43986 -15.35330 -14.64150 -14.59462 -14.23632 -14.07422 -13.91664 -13.73908 -13.53344 -13.17331 -12.78980 -12.46719 -12.19431 -12.08115 -11.95259 -11.91379 -11.79617 -11.75863 -11.63633 -11.20694 -10.86546 -10.85909 -10.81035 -10.38574 -10.34525 -10.05420 -9.97967 -9.81515 -9.62187 -9.38065 -9.10328 -8.64595 -8.52463 -7.93160 -6.75885 -5.66646 -2.98367 0.27450 0.92238 1.22928 1.59117 1.70368 3.19027 3.34820 3.43128 3.48102 3.50085 3.60462 4.19088 4.51229 4.54495 4.63319 4.91711 5.00014 5.13141 5.14985 5.28404 5.38472 5.39764 5.43390 5.51323 5.64048 5.75663 5.76215 5.79626 5.87808 5.94350 6.01628 6.14281 6.16464 6.21227 6.35513 6.36899 6.42243 6.55948 6.65005 6.69127 6.84218 7.12066 7.58633 7.61281 7.83447 7.88223 8.30404 8.46483 9.27652 9.87839 10.53812 11.45463 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.003508 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.182960 B = 7980.797267 C = 8444.775264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.090 4.090 4 C -0.072 4.072 5 C -0.205 4.205 6 S 0.377 5.623 7 N -0.485 5.485 8 C 0.098 3.902 9 C 0.592 3.408 10 O -0.527 6.527 11 N -0.678 5.678 12 C 0.154 3.846 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.177 3.823 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.132 3.868 26 C -0.081 4.081 27 C -0.041 4.041 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.406 0.594 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.056 0.944 43 H 0.027 0.973 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 16.068 -13.701 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.113 4.113 4 C -0.094 4.094 5 C -0.326 4.326 6 S 0.536 5.464 7 N -0.310 5.310 8 C -0.091 4.091 9 C 0.372 3.628 10 O -0.403 6.403 11 N -0.328 5.328 12 C 0.067 3.933 13 C -0.208 4.208 14 C -0.185 4.185 15 C 0.053 3.947 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.005 3.995 26 C -0.092 4.092 27 C -0.063 4.063 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.242 0.758 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.764 15.957 -13.483 21.427 hybrid contribution -1.123 -0.211 1.163 1.630 sum -5.886 15.746 -12.320 20.842 Atomic orbital electron populations 1.20827 0.90384 1.03081 1.02789 1.19647 0.96771 0.92594 1.00050 1.20925 0.93634 0.97903 0.98872 1.19874 0.93749 0.95182 1.00566 1.24265 1.01656 0.97768 1.08930 1.81337 1.02475 0.95046 1.67537 1.71464 1.23704 1.16531 1.19330 1.22052 0.86410 0.96306 1.04303 1.17004 0.85890 0.82537 0.77328 1.90717 1.16710 1.82273 1.50589 1.45664 1.09672 1.05438 1.71989 1.21593 0.96403 0.79179 0.96077 1.21992 1.00833 1.02047 0.95891 1.23234 0.95850 0.98276 1.01122 1.21156 0.88887 1.00003 0.84695 1.44436 1.06476 1.80671 1.01319 1.19055 0.96272 1.39343 0.80310 0.90608 1.24757 0.95772 1.02041 0.97938 1.69951 1.01300 1.53432 1.32504 0.86143 0.76813 0.77717 0.85288 1.21612 1.21745 1.20798 1.21888 0.92192 0.98274 0.87161 1.19572 0.95142 0.89856 1.04596 1.20710 0.90844 0.99178 0.95555 0.90793 0.91390 0.91026 0.84953 0.84915 0.75846 0.93069 0.91606 0.90968 0.90684 0.91714 0.93644 0.93758 0.93900 0.92597 0.95528 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.98 36.01 0.36 -0.52 16 2 C -0.09 -0.93 5.84 -105.06 -0.61 -1.54 16 3 C -0.09 -0.81 9.63 -39.85 -0.38 -1.20 16 4 C -0.07 -0.70 10.03 -39.93 -0.40 -1.10 16 5 C -0.21 -2.59 6.73 -38.49 -0.26 -2.84 16 6 S 0.38 4.64 23.36 -107.50 -2.51 2.13 16 7 N -0.48 -7.64 10.49 28.26 0.30 -7.34 16 8 C 0.10 1.64 6.82 -81.99 -0.56 1.08 16 9 C 0.59 10.87 7.19 -12.55 -0.09 10.78 16 10 O -0.53 -10.22 11.78 5.26 0.06 -10.16 16 11 N -0.68 -12.29 5.17 -46.70 -0.24 -12.53 16 12 C 0.15 2.83 0.82 -129.67 -0.11 2.72 16 13 C -0.15 -2.30 8.62 37.15 0.32 -1.98 16 14 C -0.15 -2.69 5.99 -24.90 -0.15 -2.84 16 15 C 0.18 4.32 5.36 -3.07 -0.02 4.30 16 16 N -0.60 -15.86 3.39 -170.07 -0.58 -16.43 16 17 C -0.22 -6.41 10.28 -15.06 -0.15 -6.57 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.56 10.31 55.49 0.57 -26.99 16 21 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.13 2.94 6.11 -2.53 -0.02 2.93 16 26 C -0.08 -1.21 6.10 -105.09 -0.64 -1.85 16 27 C -0.04 -0.55 9.17 -39.45 -0.36 -0.91 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 33 H 0.41 7.13 7.93 -40.82 -0.32 6.81 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.07 1.18 6.45 -51.93 -0.33 0.84 16 37 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 38 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 39 H 0.05 1.22 7.38 -51.92 -0.38 0.84 16 40 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.06 1.34 6.31 -51.94 -0.33 1.01 16 43 H 0.03 0.59 8.03 -51.92 -0.42 0.17 16 44 H 0.15 2.11 6.64 -52.49 -0.35 1.77 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -33.00 368.68 -10.89 -43.90 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.86 Total: 3.94 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.17 Total: 0.09 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 0.05 Total: -63.30 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.06 Total: -10.16 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.51 Total: 2.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.00 -10.89 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046537443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.201 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds