Wall clock time and date at job start Wed Apr 1 2020 03:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28054 * 124.24252 * 2 1 4 4 C 1.34417 * 117.92124 * 180.02562 * 3 2 1 5 5 C 1.41240 * 129.48632 * 179.97438 * 4 3 2 6 6 C 1.35749 * 120.63601 * 179.71895 * 5 4 3 7 7 C 1.40198 * 120.61356 * 0.56789 * 6 5 4 8 8 C 1.47589 * 120.12852 * 179.73371 * 7 6 5 9 9 O 1.21589 * 120.00070 * 179.72209 * 8 7 6 10 10 N 1.34782 * 119.99838 * 359.72403 * 8 7 6 11 11 C 1.46497 * 119.99822 * 179.97438 * 10 8 7 12 12 C 1.52993 * 110.89183 * 297.57543 * 11 10 8 13 13 C 1.55157 * 111.03555 * 173.66724 * 11 10 8 14 14 C 1.54334 * 103.02095 * 277.21854 * 13 11 10 15 15 N 1.47014 * 107.26782 * 338.14225 * 14 13 11 16 16 C 1.36945 * 125.64902 * 178.84833 * 15 14 13 17 17 H 1.07997 * 119.99756 * 179.68982 * 16 15 14 18 18 C 1.38805 * 119.99878 * 359.68887 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47428 * 108.70537 * 358.58102 * 15 14 13 25 25 C 1.39177 * 119.74825 * 359.45766 * 7 6 5 26 26 C 1.38919 * 119.84688 * 0.25722 * 25 7 6 27 27 S 1.70649 * 124.24351 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46999 * 89.97697 * 1 2 3 29 29 H 1.09002 * 109.47568 * 209.97494 * 1 2 3 30 30 H 1.09001 * 109.47425 * 329.97802 * 1 2 3 31 31 H 1.07996 * 119.68380 * 0.02884 * 5 4 3 32 32 H 1.08000 * 119.70038 * 180.27586 * 6 5 4 33 33 H 0.96991 * 119.99925 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47666 * 182.43089 * 12 11 10 35 35 H 1.09008 * 109.47143 * 302.42655 * 12 11 10 36 36 H 1.08999 * 109.47170 * 62.42125 * 12 11 10 37 37 H 1.08998 * 110.71770 * 35.78022 * 13 11 10 38 38 H 1.09002 * 110.71853 * 158.87455 * 13 11 10 39 39 H 1.08998 * 109.99457 * 218.65928 * 14 13 11 40 40 H 1.09007 * 109.77698 * 97.49747 * 14 13 11 41 41 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.36579 * 143.19056 * 24 15 14 43 43 H 1.08993 * 110.36917 * 265.41008 * 24 15 14 44 44 H 1.08002 * 120.07793 * 180.27173 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9106 -0.0005 5 6 4.5762 1.8951 -0.0011 6 6 5.8864 1.5399 0.0041 7 6 6.2597 0.1885 -0.0017 8 6 7.6874 -0.1856 -0.0019 9 8 8.0086 -1.3583 -0.0018 10 7 8.6352 0.7727 -0.0020 11 6 10.0523 0.4013 -0.0016 12 6 10.4120 -0.3766 1.2658 13 6 10.9559 1.6524 -0.1616 14 6 10.9636 1.8830 -1.6876 15 7 10.6078 0.6062 -2.3236 16 6 10.4824 0.3931 -3.6706 17 1 10.2207 -0.5873 -4.0401 18 6 10.6917 1.4373 -4.5608 19 7 11.0111 2.6322 -4.1104 20 14 10.5214 1.1466 -6.3982 21 1 11.8339 0.7352 -6.9580 22 1 9.5226 0.0744 -6.6392 23 1 10.0725 2.3989 -7.0580 24 6 10.4145 -0.4084 -1.2716 25 6 5.2789 -0.7989 -0.0016 26 6 3.9368 -0.4403 -0.0010 27 16 2.4672 -1.4107 -0.0006 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5142 31 1 4.3057 2.9406 -0.0008 32 1 6.6483 2.3052 0.0081 33 1 8.3790 1.7081 -0.0016 34 1 11.4782 -0.6033 1.2627 35 1 10.1712 0.2252 2.1422 36 1 9.8430 -1.3058 1.2956 37 1 10.5251 2.5082 0.3580 38 1 11.9634 1.4495 0.2019 39 1 11.9561 2.1951 -2.0124 40 1 10.2291 2.6448 -1.9491 41 1 11.1577 3.3618 -4.7326 42 1 9.5990 -1.0807 -1.5383 43 1 11.3341 -0.9721 -1.1147 44 1 5.5605 -1.8416 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046750010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:20 Heat of formation + Delta-G solvation = 51.276498 kcal Electronic energy + Delta-G solvation = -27548.716906 eV Core-core repulsion = 23786.324897 eV Total energy + Delta-G solvation = -3762.392009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.78961 -39.76836 -37.67879 -36.61476 -34.02446 -32.40885 -31.57815 -31.29950 -30.08009 -28.77371 -28.33907 -25.66708 -24.55231 -23.89986 -23.18279 -21.58027 -20.77296 -20.18218 -19.05651 -18.83052 -17.64954 -16.74992 -16.08898 -15.93818 -15.44463 -15.28074 -14.69166 -14.61903 -14.47969 -14.14074 -13.78358 -13.69309 -13.40275 -13.34539 -13.21504 -12.81146 -12.68088 -12.48101 -12.12548 -11.91766 -11.84919 -11.66528 -11.51299 -11.09493 -10.88323 -10.87683 -10.43236 -10.40625 -10.37332 -10.07331 -10.00512 -9.92032 -9.64650 -9.40500 -8.86607 -8.65145 -8.54220 -8.32836 -6.78489 -5.69393 -3.01016 -0.04317 0.93861 0.96586 1.43093 1.82747 3.01548 3.37356 3.41939 3.47229 3.49030 3.55376 3.76729 4.34843 4.52519 4.63237 4.71399 4.87061 4.94168 5.02155 5.05360 5.08832 5.29106 5.37979 5.47021 5.49063 5.60369 5.61322 5.72272 5.85280 5.93450 6.01194 6.06770 6.12283 6.15342 6.33658 6.37377 6.38876 6.53190 6.66779 6.83337 7.10894 7.33010 7.55686 7.56798 7.80276 7.84725 8.27689 8.49003 9.25352 9.85312 10.51058 11.42678 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003013 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.134878 B = 9292.351703 C =10485.371824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 N -0.471 5.471 4 C 0.102 3.898 5 C -0.071 4.071 6 C -0.073 4.073 7 C -0.108 4.108 8 C 0.563 3.437 9 O -0.534 6.534 10 N -0.693 5.693 11 C 0.156 3.844 12 C -0.149 4.149 13 C -0.147 4.147 14 C 0.177 3.823 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.130 3.870 25 C -0.007 4.007 26 C -0.194 4.194 27 S 0.108 5.892 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.251 0.749 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.940 -2.951 13.696 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.193 4.193 3 N -0.186 5.186 4 C -0.019 4.019 5 C -0.092 4.092 6 C -0.094 4.094 7 C -0.115 4.115 8 C 0.349 3.651 9 O -0.412 6.412 10 N -0.343 5.343 11 C 0.070 3.930 12 C -0.208 4.208 13 C -0.185 4.185 14 C 0.052 3.948 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.208 1.208 23 H -0.217 1.217 24 C 0.004 3.996 25 C -0.031 4.031 26 C -0.312 4.312 27 S 0.364 5.636 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.233 0.767 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.241 -4.208 13.482 22.288 hybrid contribution 0.472 1.202 -1.164 1.739 sum -16.769 -3.006 12.319 21.024 Atomic orbital electron populations 1.20579 0.84734 1.04582 1.04411 1.26825 1.01891 0.91009 0.99594 1.66139 1.04186 1.31324 1.16928 1.19289 0.89071 0.91727 1.01831 1.20258 0.90149 0.98680 1.00066 1.20879 0.96118 0.95400 0.97023 1.20003 0.93777 0.93529 1.04224 1.17857 0.84655 0.85810 0.76764 1.90739 1.82540 1.17999 1.49953 1.45704 1.05878 1.09069 1.73615 1.21518 0.79103 0.96460 0.95927 1.21993 1.01777 1.01089 0.95902 1.23241 0.98591 0.95633 1.01076 1.21156 1.00186 0.88743 0.84669 1.44441 1.81736 1.05426 1.01290 1.19056 1.39936 0.95599 0.80281 0.90619 1.24752 1.02140 0.95698 0.97947 1.69944 1.54299 1.00516 1.32533 0.86142 0.77713 0.76844 0.85258 1.21652 1.20768 1.21733 1.21899 0.98207 0.92268 0.87266 1.20406 0.88062 1.00565 0.94025 1.23712 0.98770 0.96684 1.12070 1.83955 0.95437 1.10235 1.73986 0.89021 0.89660 0.88910 0.84161 0.84175 0.76726 0.91744 0.93067 0.91027 0.91751 0.90792 0.93834 0.93608 0.93894 0.92548 0.95641 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.44 36.00 0.38 -0.10 16 2 C 0.09 0.92 7.29 -13.86 -0.10 0.82 16 3 N -0.47 -6.01 10.56 -8.96 -0.09 -6.11 16 4 C 0.10 1.37 7.00 -84.88 -0.59 0.77 16 5 C -0.07 -0.86 10.03 -39.33 -0.39 -1.25 16 6 C -0.07 -0.89 9.44 -39.74 -0.38 -1.27 16 7 C -0.11 -1.57 5.87 -105.00 -0.62 -2.19 16 8 C 0.56 9.48 7.16 -12.44 -0.09 9.39 16 9 O -0.53 -10.36 13.13 5.29 0.07 -10.29 16 10 N -0.69 -11.14 5.13 -46.63 -0.24 -11.38 16 11 C 0.16 2.72 0.82 -129.67 -0.11 2.61 16 12 C -0.15 -2.22 8.58 37.15 0.32 -1.91 16 13 C -0.15 -2.54 5.99 -24.89 -0.15 -2.69 16 14 C 0.18 4.13 5.37 -3.06 -0.02 4.12 16 15 N -0.60 -15.39 3.39 -170.06 -0.58 -15.97 16 16 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 17 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C 0.13 2.85 6.10 -2.52 -0.02 2.84 16 25 C -0.01 -0.10 9.62 -38.98 -0.37 -0.48 16 26 C -0.19 -2.55 6.54 -38.61 -0.25 -2.81 16 27 S 0.11 1.10 23.11 -107.50 -2.48 -1.38 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 1.42 6.38 -52.49 -0.33 1.09 16 33 H 0.40 5.54 6.51 -40.82 -0.27 5.27 16 34 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 35 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 36 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 37 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.07 1.19 8.01 -51.93 -0.42 0.78 16 39 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16 40 H 0.05 1.16 7.37 -51.93 -0.38 0.78 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 1.34 6.31 -51.93 -0.33 1.01 16 43 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 44 H 0.15 1.98 7.64 -52.49 -0.40 1.58 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -33.84 369.76 -10.62 -44.46 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.77 Total: 2.88 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.64 Total: 1.07 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.34 Total: -59.81 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.48 Total: -1.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.84 -10.62 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046750010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.740 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds