Wall clock time and date at job start Wed Apr 1 2020 03:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28054 * 124.24252 * 2 1 4 4 C 1.34417 * 117.92124 * 180.02562 * 3 2 1 5 5 C 1.41240 * 129.48632 * 179.97438 * 4 3 2 6 6 C 1.35749 * 120.63601 * 179.71895 * 5 4 3 7 7 C 1.40198 * 120.61356 * 0.56789 * 6 5 4 8 8 C 1.47589 * 120.12852 * 179.73371 * 7 6 5 9 9 O 1.21589 * 120.00070 * 179.72209 * 8 7 6 10 10 N 1.34782 * 119.99838 * 359.72403 * 8 7 6 11 11 C 1.46497 * 119.99822 * 179.97438 * 10 8 7 12 12 C 1.52993 * 110.89183 * 297.57543 * 11 10 8 13 13 C 1.55157 * 111.03555 * 173.66724 * 11 10 8 14 14 C 1.54334 * 103.02095 * 277.21854 * 13 11 10 15 15 N 1.47014 * 107.26782 * 338.14225 * 14 13 11 16 16 C 1.36945 * 125.64902 * 178.84833 * 15 14 13 17 17 H 1.07997 * 119.99756 * 179.68982 * 16 15 14 18 18 C 1.38805 * 119.99878 * 359.68887 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47428 * 108.70537 * 358.58102 * 15 14 13 25 25 C 1.39177 * 119.74825 * 359.45766 * 7 6 5 26 26 C 1.38919 * 119.84688 * 0.25722 * 25 7 6 27 27 S 1.70649 * 124.24351 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46999 * 89.97697 * 1 2 3 29 29 H 1.09002 * 109.47568 * 209.97494 * 1 2 3 30 30 H 1.09001 * 109.47425 * 329.97802 * 1 2 3 31 31 H 1.07996 * 119.68380 * 0.02884 * 5 4 3 32 32 H 1.08000 * 119.70038 * 180.27586 * 6 5 4 33 33 H 0.96991 * 119.99925 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47666 * 182.43089 * 12 11 10 35 35 H 1.09008 * 109.47143 * 302.42655 * 12 11 10 36 36 H 1.08999 * 109.47170 * 62.42125 * 12 11 10 37 37 H 1.08998 * 110.71770 * 35.78022 * 13 11 10 38 38 H 1.09002 * 110.71853 * 158.87455 * 13 11 10 39 39 H 1.08998 * 109.99457 * 218.65928 * 14 13 11 40 40 H 1.09007 * 109.77698 * 97.49747 * 14 13 11 41 41 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.36579 * 143.19056 * 24 15 14 43 43 H 1.08993 * 110.36917 * 265.41008 * 24 15 14 44 44 H 1.08002 * 120.07793 * 180.27173 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9106 -0.0005 5 6 4.5762 1.8951 -0.0011 6 6 5.8864 1.5399 0.0041 7 6 6.2597 0.1885 -0.0017 8 6 7.6874 -0.1856 -0.0019 9 8 8.0086 -1.3583 -0.0018 10 7 8.6352 0.7727 -0.0020 11 6 10.0523 0.4013 -0.0016 12 6 10.4120 -0.3766 1.2658 13 6 10.9559 1.6524 -0.1616 14 6 10.9636 1.8830 -1.6876 15 7 10.6078 0.6062 -2.3236 16 6 10.4824 0.3931 -3.6706 17 1 10.2207 -0.5873 -4.0401 18 6 10.6917 1.4373 -4.5608 19 7 11.0111 2.6322 -4.1104 20 14 10.5214 1.1466 -6.3982 21 1 11.8339 0.7352 -6.9580 22 1 9.5226 0.0744 -6.6392 23 1 10.0725 2.3989 -7.0580 24 6 10.4145 -0.4084 -1.2716 25 6 5.2789 -0.7989 -0.0016 26 6 3.9368 -0.4403 -0.0010 27 16 2.4672 -1.4107 -0.0006 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5142 31 1 4.3057 2.9406 -0.0008 32 1 6.6483 2.3052 0.0081 33 1 8.3790 1.7081 -0.0016 34 1 11.4782 -0.6033 1.2627 35 1 10.1712 0.2252 2.1422 36 1 9.8430 -1.3058 1.2956 37 1 10.5251 2.5082 0.3580 38 1 11.9634 1.4495 0.2019 39 1 11.9561 2.1951 -2.0124 40 1 10.2291 2.6448 -1.9491 41 1 11.1577 3.3618 -4.7326 42 1 9.5990 -1.0807 -1.5383 43 1 11.3341 -0.9721 -1.1147 44 1 5.5605 -1.8416 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046750010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:19 Heat of formation + Delta-G solvation = 29.416905 kcal Electronic energy + Delta-G solvation = -27549.664809 eV Core-core repulsion = 23786.324897 eV Total energy + Delta-G solvation = -3763.339912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84556 -41.00622 -39.08170 -37.75685 -35.73602 -33.87463 -32.70076 -32.31975 -31.61329 -30.37596 -29.29729 -27.51322 -25.62404 -25.32459 -24.42752 -22.61189 -22.14279 -21.70051 -20.45262 -19.84488 -19.03977 -18.42993 -17.30295 -16.99504 -16.74957 -16.42208 -16.33948 -15.99315 -15.76317 -15.55099 -15.09563 -14.98681 -14.44361 -14.29236 -14.11600 -14.00490 -13.86684 -13.68265 -13.48905 -13.39938 -13.11527 -13.07358 -12.84820 -12.76168 -12.44118 -12.12923 -12.05225 -12.02466 -11.97793 -11.70289 -11.55163 -11.32511 -10.81411 -10.77198 -10.70763 -10.07589 -9.73875 -9.25858 -8.85724 -7.86153 -5.19268 -0.99084 -0.01361 0.08676 0.56445 0.85231 1.42685 1.43652 1.52398 1.88841 2.13437 2.47458 2.66203 2.77916 3.31888 3.42815 3.50483 3.65857 3.74711 3.85493 3.98148 4.04468 4.05671 4.19547 4.27303 4.56656 4.64554 4.65822 4.67070 4.70283 4.76697 4.87660 4.89022 4.94728 4.98376 5.04180 5.06942 5.10421 5.13518 5.37175 5.42494 5.43662 5.63788 5.69405 5.78369 6.20474 6.45973 6.56601 7.12061 7.21193 7.77804 8.41706 9.23493 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003013 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.134878 B = 9292.351703 C =10485.371824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.099 3.901 3 N -0.501 5.501 4 C 0.094 3.906 5 C -0.075 4.075 6 C -0.067 4.067 7 C -0.129 4.129 8 C 0.561 3.439 9 O -0.567 6.567 10 N -0.690 5.690 11 C 0.167 3.833 12 C -0.140 4.140 13 C -0.128 4.128 14 C 0.184 3.816 15 N -0.621 5.621 16 C -0.240 4.240 17 H 0.066 0.934 18 C -0.058 4.058 19 N -0.944 5.944 20 Si 0.971 3.029 21 H -0.285 1.285 22 H -0.278 1.278 23 H -0.289 1.289 24 C 0.126 3.874 25 C -0.012 4.012 26 C -0.221 4.221 27 S 0.140 5.860 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.408 0.592 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.008 0.992 40 H 0.019 0.981 41 H 0.247 0.753 42 H 0.031 0.969 43 H 0.026 0.974 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.672 -2.469 14.854 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.184 4.184 3 N -0.216 5.216 4 C -0.028 4.028 5 C -0.096 4.096 6 C -0.089 4.089 7 C -0.136 4.136 8 C 0.349 3.651 9 O -0.448 6.448 10 N -0.340 5.340 11 C 0.080 3.920 12 C -0.198 4.198 13 C -0.166 4.166 14 C 0.059 3.941 15 N -0.347 5.347 16 C -0.370 4.370 17 H 0.084 0.916 18 C -0.251 4.251 19 N -0.593 5.593 20 Si 0.800 3.200 21 H -0.212 1.212 22 H -0.203 1.203 23 H -0.215 1.215 24 C 0.000 4.000 25 C -0.035 4.035 26 C -0.339 4.339 27 S 0.396 5.604 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.179 0.821 32 H 0.178 0.822 33 H 0.246 0.754 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.027 0.973 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.043 0.957 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.982 -3.732 14.667 24.277 hybrid contribution 0.871 0.966 -1.547 2.022 sum -18.111 -2.766 13.120 22.534 Atomic orbital electron populations 1.20847 0.81545 1.06199 1.05873 1.27674 1.03640 0.90382 0.96700 1.66242 1.03867 1.32377 1.19127 1.19650 0.89897 0.92062 1.01178 1.20523 0.89808 0.99624 0.99624 1.21037 0.96849 0.94766 0.96223 1.19883 0.92386 0.94786 1.06532 1.18212 0.85669 0.85384 0.75843 1.90714 1.83224 1.19333 1.51514 1.45664 1.05342 1.09682 1.73342 1.21391 0.79892 0.95881 0.94832 1.21922 1.02336 1.00322 0.95236 1.23120 1.00082 0.96887 0.96557 1.20963 0.97192 0.87255 0.88656 1.44682 1.81681 1.07099 1.01210 1.19288 1.40014 0.95420 0.82240 0.91580 1.25481 1.02250 0.95596 1.01807 1.70135 1.54808 1.00896 1.33425 0.85193 0.77668 0.76689 0.80477 1.21222 1.20310 1.21525 1.22013 0.97281 0.91989 0.88714 1.20400 0.88720 1.00248 0.94170 1.23923 0.99398 0.97751 1.12874 1.83824 0.93666 1.09610 1.73276 0.87395 0.87156 0.88132 0.82084 0.82183 0.75409 0.90445 0.90318 0.92612 0.88147 0.88861 0.97330 0.96238 0.94311 0.95036 0.95656 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.44 71.23 0.74 0.03 16 2 C 0.10 1.80 7.29 88.66 0.65 2.45 16 3 N -0.50 -12.07 10.56 -182.20 -1.92 -13.99 16 4 C 0.09 2.44 7.00 39.95 0.28 2.72 16 5 C -0.08 -1.75 10.03 22.43 0.23 -1.52 16 6 C -0.07 -1.60 9.44 22.17 0.21 -1.40 16 7 C -0.13 -3.78 5.87 -20.11 -0.12 -3.90 16 8 C 0.56 19.10 7.16 86.71 0.62 19.72 16 9 O -0.57 -22.69 13.13 -4.00 -0.05 -22.75 16 10 N -0.69 -21.70 5.13 -419.70 -2.15 -23.85 16 11 C 0.17 5.63 0.82 5.00 0.00 5.63 16 12 C -0.14 -3.88 8.58 71.98 0.62 -3.27 16 13 C -0.13 -4.19 5.99 31.79 0.19 -4.00 16 14 C 0.18 8.68 5.37 86.73 0.47 9.15 16 15 N -0.62 -32.49 3.39 -691.96 -2.35 -34.83 16 16 C -0.24 -14.04 10.28 84.03 0.86 -13.18 16 17 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 18 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 19 N -0.94 -56.08 10.31 21.65 0.22 -55.86 16 20 Si 0.97 47.02 29.55 68.60 2.03 49.04 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 C 0.13 5.62 6.10 86.86 0.53 6.15 16 25 C -0.01 -0.35 9.62 22.66 0.22 -0.13 16 26 C -0.22 -5.76 6.54 22.90 0.15 -5.61 16 27 S 0.14 2.67 23.11 -56.49 -1.31 1.36 16 28 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.16 3.01 6.38 -2.91 -0.02 2.99 16 33 H 0.41 10.81 6.51 -92.71 -0.60 10.21 16 34 H 0.08 1.95 8.11 -2.39 -0.02 1.93 16 35 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.05 1.76 6.53 -2.39 -0.02 1.75 16 37 H 0.10 2.61 8.05 -2.39 -0.02 2.59 16 38 H 0.09 2.75 8.01 -2.39 -0.02 2.73 16 39 H 0.01 0.45 7.52 -2.39 -0.02 0.44 16 40 H 0.02 1.01 7.37 -2.38 -0.02 0.99 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.03 1.55 6.31 -2.39 -0.02 1.54 16 43 H 0.03 1.13 8.04 -2.39 -0.02 1.11 16 44 H 0.14 3.99 7.64 -2.91 -0.02 3.97 16 Total: -1.00 -76.25 369.76 1.02 -75.23 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.44 Total: 15.68 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 6.11 Total: 9.97 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -6.20 Total: -128.54 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.31 Total: 1.36 kcal Total: -76.25 1.02 -75.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046750010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.651 kcal (2) G-P(sol) polarization free energy of solvation -76.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds