Wall clock time and date at job start Wed Apr 1 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00414 * 2 1 4 4 H 1.48497 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46782 * 299.99500 * 3 2 1 6 6 H 1.48498 * 109.47328 * 59.99655 * 3 2 1 7 7 C 1.38812 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00507 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.48682 * 126.23211 * 0.29114 * 9 7 2 11 11 C 1.55467 * 106.78434 * 173.96139 * 10 9 7 12 12 C 1.53435 * 101.67041 * 337.43139 * 11 10 9 13 13 H 1.09003 * 111.74786 * 281.75986 * 12 11 10 14 14 C 1.45026 * 126.56529 * 179.97438 * 9 7 2 15 15 H 1.09000 * 108.70213 * 96.45704 * 14 9 7 16 16 C 1.51083 * 119.18567 * 331.17565 * 14 9 7 17 17 C 1.53867 * 107.33787 * 176.73193 * 16 14 9 18 18 C 1.52723 * 111.52490 * 56.92905 * 17 16 14 19 19 N 1.45731 * 116.37435 * 152.72582 * 12 11 10 20 20 C 1.34773 * 122.22933 * 9.87828 * 19 12 11 21 21 O 1.21722 * 120.00374 * 0.58490 * 20 19 12 22 22 C 1.46500 * 119.99873 * 180.58971 * 20 19 12 23 23 C 1.36108 * 125.71079 * 151.45338 * 22 20 19 24 24 C 1.42237 * 107.62166 * 179.97438 * 23 22 20 25 25 C 1.45589 * 140.77296 * 179.97438 * 24 23 22 26 26 C 1.31816 * 114.62699 * 180.02562 * 25 24 23 27 27 S 1.75352 * 111.24615 * 0.23043 * 26 25 24 28 28 C 1.38169 * 106.99421 * 359.97438 * 24 23 22 29 29 N 1.37455 * 108.17240 * 0.02562 * 28 24 23 30 30 H 0.97001 * 125.68407 * 180.02562 * 29 28 24 31 31 H 0.96999 * 119.99682 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.03271 * 54.65959 * 10 9 7 33 33 H 1.09003 * 110.10744 * 293.31610 * 10 9 7 34 34 H 1.08994 * 110.99370 * 219.33171 * 11 10 9 35 35 H 1.09004 * 110.98363 * 95.52131 * 11 10 9 36 36 H 1.09000 * 109.88461 * 57.27662 * 16 14 9 37 37 H 1.08999 * 109.94591 * 296.22568 * 16 14 9 38 38 H 1.08998 * 109.07397 * 296.39844 * 17 16 14 39 39 H 1.09002 * 109.01451 * 177.41112 * 17 16 14 40 40 H 1.09000 * 109.16007 * 191.06401 * 18 17 16 41 41 H 1.08999 * 109.12011 * 71.84499 * 18 17 16 42 42 H 1.07994 * 126.19381 * 359.97438 * 23 22 20 43 43 H 1.07995 * 122.68739 * 359.97438 * 25 24 23 44 44 H 1.08003 * 124.37830 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1525 -2.5495 -0.0061 11 6 -0.4374 -4.0701 -0.1598 12 6 0.8660 -4.5670 -0.7991 13 1 0.9038 -4.3432 -1.8653 14 6 1.9023 -3.7187 0.0005 15 1 1.9348 -4.0856 1.0264 16 6 3.2556 -3.9351 -0.6354 17 6 3.6377 -5.4085 -0.4103 18 6 2.5806 -6.3543 -0.9765 19 7 1.2246 -5.9559 -0.5424 20 6 0.3744 -6.8209 0.0454 21 8 -0.7392 -6.4532 0.3715 22 6 0.7906 -8.2037 0.2920 23 6 0.3351 -9.0037 1.2945 24 6 0.9910 -10.2601 1.1745 25 6 1.0533 -11.5656 1.8159 26 6 1.8881 -12.4155 1.2518 27 16 2.6931 -11.6939 -0.1289 28 6 1.8343 -10.1729 0.0835 29 7 1.7103 -8.9141 -0.4546 30 1 2.1884 -8.5806 -1.2299 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5840 -2.0035 -0.8450 33 1 -0.5735 -2.1849 0.9309 34 1 -1.2870 -4.2434 -0.8202 35 1 -0.5984 -4.5373 0.8118 36 1 3.9939 -3.2849 -0.1662 37 1 3.2023 -3.7250 -1.7036 38 1 3.7417 -5.5900 0.6594 39 1 4.5914 -5.6067 -0.8994 40 1 2.7840 -7.3672 -0.6290 41 1 2.6290 -6.3331 -2.0652 42 1 -0.3926 -8.7335 2.0453 43 1 0.4633 -11.8173 2.6847 44 1 2.0578 -13.4244 1.5978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049631300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:55 Heat of formation + Delta-G solvation = 95.496490 kcal Electronic energy + Delta-G solvation = -28250.946471 eV Core-core repulsion = 24490.471985 eV Total energy + Delta-G solvation = -3760.474486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.68801 -39.98471 -37.71492 -35.91049 -35.22605 -32.73924 -32.22636 -30.75546 -29.45720 -28.54291 -28.06120 -25.11409 -24.51464 -23.26088 -22.42703 -21.64152 -20.72872 -20.20517 -19.64407 -19.39854 -18.22839 -16.80195 -16.27009 -15.80311 -15.63083 -15.28962 -14.95026 -14.72912 -14.61630 -14.36645 -14.08080 -13.81875 -13.62498 -13.31456 -13.04719 -12.93580 -12.51304 -12.34390 -12.07009 -11.95010 -11.92065 -11.59013 -11.15520 -11.08177 -10.90018 -10.76257 -10.63646 -10.55136 -10.10962 -10.07975 -9.90203 -9.68377 -9.64344 -9.24290 -8.61700 -8.50361 -8.37064 -7.87896 -6.85529 -5.71566 -3.06269 0.82343 1.09951 1.31203 1.73011 2.66558 2.82982 2.95849 3.36826 3.38848 3.43926 3.46722 4.25353 4.46107 4.54826 4.64077 4.78309 4.92294 5.06662 5.18164 5.26045 5.31730 5.32908 5.51463 5.52599 5.54726 5.68061 5.78467 5.87035 5.89648 5.95114 6.03472 6.16395 6.20852 6.25552 6.31156 6.48359 6.52376 6.65511 6.71378 6.84614 6.90743 7.10913 7.48845 7.57935 7.65088 7.82814 8.20432 8.23469 9.17233 9.81236 10.48625 11.40193 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.002587 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.528239 B =10820.284093 C =11457.782440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.131 4.131 12 C 0.116 3.884 13 H 0.083 0.917 14 C 0.160 3.840 15 H 0.020 0.980 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.093 3.907 19 N -0.595 5.595 20 C 0.586 3.414 21 O -0.511 6.511 22 C 0.006 3.994 23 C -0.078 4.078 24 C -0.159 4.159 25 C -0.068 4.068 26 C -0.224 4.224 27 S 0.126 5.874 28 C -0.018 4.018 29 N -0.527 5.527 30 H 0.423 0.577 31 H 0.252 0.748 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.145 0.855 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 -24.458 -1.406 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.169 4.169 12 C 0.012 3.988 13 H 0.101 0.899 14 C 0.050 3.950 15 H 0.037 0.963 16 C -0.154 4.154 17 C -0.166 4.166 18 C -0.031 4.031 19 N -0.327 5.327 20 C 0.373 3.627 21 O -0.386 6.386 22 C -0.107 4.107 23 C -0.106 4.106 24 C -0.172 4.172 25 C -0.099 4.099 26 C -0.358 4.358 27 S 0.379 5.621 28 C -0.246 4.246 29 N -0.136 5.136 30 H 0.267 0.733 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.848 -24.414 -2.331 25.463 hybrid contribution -0.197 1.484 0.559 1.598 sum 6.650 -22.931 -1.772 23.941 Atomic orbital electron populations 1.69956 1.04877 1.24974 1.56805 1.24809 0.95682 0.97644 1.02229 0.86073 0.78662 0.83925 0.77249 1.20564 1.21783 1.21759 1.19035 0.90351 0.82232 1.43906 0.90343 1.44179 1.01819 0.99279 1.86531 1.21811 0.83445 0.88633 1.01248 1.22989 0.94392 0.98109 1.01449 1.22630 0.99166 0.77591 0.99422 0.89926 1.20848 0.91210 0.87234 0.95661 0.96273 1.21432 0.98714 0.93857 1.01395 1.21872 0.97246 0.95778 1.01745 1.22124 0.82494 0.98859 0.99581 1.47985 1.13912 1.11654 1.59192 1.16985 0.84654 0.82654 0.78416 1.90889 1.19610 1.76840 1.51265 1.20237 0.98239 0.94038 0.98185 1.20711 1.00832 0.90098 0.98944 1.19377 1.03337 0.95897 0.98596 1.20351 0.98959 0.90381 1.00175 1.24843 1.04963 1.04219 1.01746 1.83861 1.45369 0.99813 1.33015 1.23597 1.06922 0.92615 1.01507 1.42251 1.35754 1.08539 1.27073 0.73292 0.93735 0.92367 0.94092 0.91895 0.89900 0.91239 0.91667 0.91547 0.90747 0.90374 0.91095 0.82652 0.83764 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.00 10.42 55.49 0.58 -26.43 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.18 9.94 -15.06 -0.15 -6.33 16 8 H 0.08 2.05 7.33 -52.49 -0.38 1.67 16 9 N -0.59 -14.96 3.35 -162.73 -0.54 -15.51 16 10 C 0.17 4.31 5.47 -1.53 -0.01 4.30 16 11 C -0.13 -2.73 5.00 -25.19 -0.13 -2.86 16 12 C 0.12 2.14 3.33 -66.53 -0.22 1.92 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 14 C 0.16 3.26 2.62 -68.09 -0.18 3.08 16 15 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 16 C -0.12 -1.90 5.44 -27.24 -0.15 -2.05 16 17 C -0.13 -1.55 5.93 -26.42 -0.16 -1.71 16 18 C 0.09 1.04 5.57 -3.44 -0.02 1.03 16 19 N -0.59 -9.05 2.90 -165.27 -0.48 -9.53 16 20 C 0.59 9.42 7.60 -12.93 -0.10 9.32 16 21 O -0.51 -9.84 13.82 5.17 0.07 -9.77 16 22 C 0.01 0.08 6.37 -82.47 -0.53 -0.45 16 23 C -0.08 -1.02 10.70 -38.81 -0.42 -1.43 16 24 C -0.16 -1.85 6.80 -105.46 -0.72 -2.57 16 25 C -0.07 -0.61 10.42 -38.55 -0.40 -1.01 16 26 C -0.22 -1.69 11.03 28.84 0.32 -1.38 16 27 S 0.13 1.03 23.24 -107.50 -2.50 -1.47 16 28 C -0.02 -0.20 8.41 -15.05 -0.13 -0.33 16 29 N -0.53 -5.65 4.89 -7.94 -0.04 -5.69 16 30 H 0.42 3.53 6.38 -40.82 -0.26 3.27 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.06 1.58 7.16 -51.93 -0.37 1.21 16 33 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.81 6.22 -51.93 -0.32 1.49 16 36 H 0.07 1.20 7.73 -51.93 -0.40 0.80 16 37 H 0.06 1.07 8.12 -51.93 -0.42 0.64 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.74 3.98 -51.93 -0.21 0.53 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -32.43 355.58 -11.36 -43.79 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.71 Total: 3.06 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -3.07 Total: -0.75 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.49 Total: -57.15 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.43 -11.36 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049631300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.288 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds