Wall clock time and date at job start Wed Apr 1 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00414 * 2 1 4 4 H 1.48497 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46782 * 299.99500 * 3 2 1 6 6 H 1.48498 * 109.47328 * 59.99655 * 3 2 1 7 7 C 1.38812 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00507 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.48682 * 126.23211 * 0.29114 * 9 7 2 11 11 C 1.55467 * 106.78434 * 173.96139 * 10 9 7 12 12 C 1.53435 * 101.67041 * 337.43139 * 11 10 9 13 13 H 1.09003 * 111.74786 * 281.75986 * 12 11 10 14 14 C 1.45026 * 126.56529 * 179.97438 * 9 7 2 15 15 H 1.09000 * 108.70213 * 96.45704 * 14 9 7 16 16 C 1.51083 * 119.18567 * 331.17565 * 14 9 7 17 17 C 1.53867 * 107.33787 * 176.73193 * 16 14 9 18 18 C 1.52723 * 111.52490 * 56.92905 * 17 16 14 19 19 N 1.45731 * 116.37435 * 152.72582 * 12 11 10 20 20 C 1.34773 * 122.22933 * 9.87828 * 19 12 11 21 21 O 1.21722 * 120.00374 * 0.58490 * 20 19 12 22 22 C 1.46500 * 119.99873 * 180.58971 * 20 19 12 23 23 C 1.36108 * 125.71079 * 151.45338 * 22 20 19 24 24 C 1.42237 * 107.62166 * 179.97438 * 23 22 20 25 25 C 1.45589 * 140.77296 * 179.97438 * 24 23 22 26 26 C 1.31816 * 114.62699 * 180.02562 * 25 24 23 27 27 S 1.75352 * 111.24615 * 0.23043 * 26 25 24 28 28 C 1.38169 * 106.99421 * 359.97438 * 24 23 22 29 29 N 1.37455 * 108.17240 * 0.02562 * 28 24 23 30 30 H 0.97001 * 125.68407 * 180.02562 * 29 28 24 31 31 H 0.96999 * 119.99682 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.03271 * 54.65959 * 10 9 7 33 33 H 1.09003 * 110.10744 * 293.31610 * 10 9 7 34 34 H 1.08994 * 110.99370 * 219.33171 * 11 10 9 35 35 H 1.09004 * 110.98363 * 95.52131 * 11 10 9 36 36 H 1.09000 * 109.88461 * 57.27662 * 16 14 9 37 37 H 1.08999 * 109.94591 * 296.22568 * 16 14 9 38 38 H 1.08998 * 109.07397 * 296.39844 * 17 16 14 39 39 H 1.09002 * 109.01451 * 177.41112 * 17 16 14 40 40 H 1.09000 * 109.16007 * 191.06401 * 18 17 16 41 41 H 1.08999 * 109.12011 * 71.84499 * 18 17 16 42 42 H 1.07994 * 126.19381 * 359.97438 * 23 22 20 43 43 H 1.07995 * 122.68739 * 359.97438 * 25 24 23 44 44 H 1.08003 * 124.37830 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1525 -2.5495 -0.0061 11 6 -0.4374 -4.0701 -0.1598 12 6 0.8660 -4.5670 -0.7991 13 1 0.9038 -4.3432 -1.8653 14 6 1.9023 -3.7187 0.0005 15 1 1.9348 -4.0856 1.0264 16 6 3.2556 -3.9351 -0.6354 17 6 3.6377 -5.4085 -0.4103 18 6 2.5806 -6.3543 -0.9765 19 7 1.2246 -5.9559 -0.5424 20 6 0.3744 -6.8209 0.0454 21 8 -0.7392 -6.4532 0.3715 22 6 0.7906 -8.2037 0.2920 23 6 0.3351 -9.0037 1.2945 24 6 0.9910 -10.2601 1.1745 25 6 1.0533 -11.5656 1.8159 26 6 1.8881 -12.4155 1.2518 27 16 2.6931 -11.6939 -0.1289 28 6 1.8343 -10.1729 0.0835 29 7 1.7103 -8.9141 -0.4546 30 1 2.1884 -8.5806 -1.2299 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5840 -2.0035 -0.8450 33 1 -0.5735 -2.1849 0.9309 34 1 -1.2870 -4.2434 -0.8202 35 1 -0.5984 -4.5373 0.8118 36 1 3.9939 -3.2849 -0.1662 37 1 3.2023 -3.7250 -1.7036 38 1 3.7417 -5.5900 0.6594 39 1 4.5914 -5.6067 -0.8994 40 1 2.7840 -7.3672 -0.6290 41 1 2.6290 -6.3331 -2.0652 42 1 -0.3926 -8.7335 2.0453 43 1 0.4633 -11.8173 2.6847 44 1 2.0578 -13.4244 1.5978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049631300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:54 Heat of formation + Delta-G solvation = 75.921333 kcal Electronic energy + Delta-G solvation = -28251.795314 eV Core-core repulsion = 24490.471985 eV Total energy + Delta-G solvation = -3761.323329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.66588 -41.26825 -39.16232 -37.17910 -36.21925 -34.28843 -33.94418 -31.67230 -31.12137 -29.94469 -29.25015 -26.51628 -26.32207 -24.03137 -23.65257 -22.94568 -22.20719 -21.39397 -21.11825 -20.24498 -19.32243 -18.53977 -17.41329 -17.25347 -16.93383 -16.56133 -16.15356 -15.93309 -15.69056 -15.54630 -15.37889 -15.19054 -14.96649 -14.49360 -14.31629 -14.22388 -14.00304 -13.68014 -13.46154 -13.20842 -12.97575 -12.77943 -12.76232 -12.62965 -12.33933 -12.09233 -11.97896 -11.84561 -11.76153 -11.73891 -11.62992 -11.51371 -10.84779 -10.64755 -10.51508 -9.73326 -9.25386 -8.93591 -8.61592 -7.84999 -5.22305 0.08633 0.26205 0.45317 1.09040 1.45402 1.46743 1.56749 1.65153 1.74952 2.08717 2.33584 2.49179 3.17362 3.33493 3.42752 3.77334 3.81097 3.85644 3.94506 3.96780 4.04542 4.15289 4.23207 4.40345 4.47550 4.51478 4.53466 4.62623 4.65225 4.78101 4.83133 4.92657 5.02363 5.07055 5.19302 5.22752 5.23456 5.34548 5.44900 5.47066 5.53640 5.57412 5.65516 5.70706 6.11666 6.16065 6.29679 6.95603 7.03902 7.73798 8.43326 9.26694 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.002587 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.528239 B =10820.284093 C =11457.782440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.090 0.910 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.115 4.115 12 C 0.132 3.868 13 H 0.090 0.910 14 C 0.154 3.846 15 H -0.002 1.002 16 C -0.110 4.110 17 C -0.118 4.118 18 C 0.088 3.912 19 N -0.594 5.594 20 C 0.584 3.416 21 O -0.555 6.555 22 C -0.009 4.009 23 C -0.090 4.090 24 C -0.179 4.179 25 C -0.089 4.089 26 C -0.212 4.212 27 S 0.165 5.835 28 C -0.025 4.025 29 N -0.517 5.517 30 H 0.434 0.566 31 H 0.246 0.754 32 H 0.030 0.970 33 H 0.000 1.000 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.150 0.850 43 H 0.161 0.839 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.643 -27.741 -2.571 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.154 4.154 12 C 0.027 3.973 13 H 0.108 0.892 14 C 0.046 3.954 15 H 0.015 0.985 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.034 4.034 19 N -0.326 5.326 20 C 0.373 3.627 21 O -0.433 6.433 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.192 4.192 25 C -0.119 4.119 26 C -0.346 4.346 27 S 0.419 5.581 28 C -0.253 4.253 29 N -0.127 5.127 30 H 0.280 0.720 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.018 0.982 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.168 0.832 43 H 0.178 0.822 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 10.141 -27.748 -3.519 29.752 hybrid contribution -1.172 2.338 0.990 2.796 sum 8.969 -25.410 -2.530 27.065 Atomic orbital electron populations 1.70185 1.06507 1.25214 1.58470 1.25698 0.96545 1.01188 1.02818 0.84999 0.78355 0.79395 0.76522 1.18523 1.21897 1.22415 1.19452 0.91035 0.83107 1.42427 0.89262 1.44428 1.02020 1.00841 1.86386 1.21496 0.83799 0.90974 0.97889 1.22718 0.96255 0.95084 1.01326 1.22223 0.96469 0.79541 0.99030 0.89194 1.21021 0.94244 0.84966 0.95216 0.98466 1.21399 0.95509 0.96970 1.00992 1.21848 0.99287 0.92519 1.01999 1.22471 0.79722 0.99663 1.01502 1.48005 1.15592 1.09941 1.59023 1.17324 0.84137 0.83707 0.77501 1.90857 1.21519 1.77914 1.53011 1.19686 1.00128 0.92867 0.99509 1.20853 1.00891 0.91128 0.98909 1.19678 1.03571 0.96373 0.99566 1.20536 1.00408 0.89601 1.01350 1.25315 1.03302 1.05215 1.00719 1.83838 1.44147 0.97431 1.32718 1.24060 1.06927 0.93254 1.01086 1.42055 1.35178 1.08410 1.27102 0.71951 0.94457 0.95212 0.98168 0.91435 0.91116 0.92253 0.91110 0.92307 0.86539 0.88095 0.87961 0.83234 0.82191 0.78147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.91 10.42 21.65 0.23 -58.69 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 46.02 29.55 68.60 2.03 48.04 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.23 -12.88 9.94 84.03 0.84 -12.04 16 8 H 0.09 4.66 7.33 -2.91 -0.02 4.64 16 9 N -0.61 -32.03 3.35 -668.75 -2.24 -34.27 16 10 C 0.18 9.79 5.47 86.81 0.47 10.26 16 11 C -0.12 -5.08 5.00 31.59 0.16 -4.92 16 12 C 0.13 4.91 3.33 46.31 0.15 5.07 16 13 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 14 C 0.15 6.34 2.62 45.67 0.12 6.46 16 15 H 0.00 -0.09 8.06 -2.39 -0.02 -0.11 16 16 C -0.11 -3.44 5.44 30.26 0.16 -3.28 16 17 C -0.12 -2.47 5.93 30.79 0.18 -2.29 16 18 C 0.09 1.69 5.57 86.03 0.48 2.17 16 19 N -0.59 -17.51 2.90 -794.99 -2.31 -19.82 16 20 C 0.58 18.86 7.60 86.40 0.66 19.51 16 21 O -0.55 -22.25 13.82 -4.42 -0.06 -22.32 16 22 C -0.01 -0.23 6.37 39.81 0.25 0.02 16 23 C -0.09 -2.32 10.70 22.77 0.24 -2.07 16 24 C -0.18 -3.87 6.80 -20.41 -0.14 -4.01 16 25 C -0.09 -1.37 10.42 23.39 0.24 -1.13 16 26 C -0.21 -2.39 11.03 67.04 0.74 -1.65 16 27 S 0.17 2.06 23.24 -56.49 -1.31 0.74 16 28 C -0.02 -0.47 8.41 83.80 0.70 0.23 16 29 N -0.52 -9.83 4.89 -179.04 -0.88 -10.70 16 30 H 0.43 5.76 6.38 -92.71 -0.59 5.17 16 31 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.03 1.73 7.16 -2.39 -0.02 1.71 16 33 H 0.00 0.00 7.81 -2.39 -0.02 -0.02 16 34 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.07 3.30 6.22 -2.38 -0.01 3.29 16 36 H 0.06 1.97 7.73 -2.39 -0.02 1.95 16 37 H 0.07 2.14 8.12 -2.39 -0.02 2.13 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.10 1.53 3.98 -2.39 -0.01 1.52 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 43 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -75.70 355.58 1.65 -74.05 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.45 Total: 14.16 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.74 Total: 8.78 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -5.20 Total: -123.47 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.31 Total: 0.74 kcal Total: -75.70 1.65 -74.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049631300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.976 kcal (2) G-P(sol) polarization free energy of solvation -75.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds