Wall clock time and date at job start Wed Apr 1 2020 02:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00423 * 2 1 4 4 H 1.48496 * 109.47309 * 240.00043 * 3 2 1 5 5 H 1.48502 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47183 * 119.99981 * 3 2 1 7 7 C 1.38816 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00227 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99547 * 359.97438 * 7 2 1 10 10 C 1.47519 * 126.55216 * 0.65931 * 9 7 2 11 11 C 1.55468 * 107.04490 * 185.44291 * 10 9 7 12 12 C 1.53436 * 101.67035 * 22.17588 * 11 10 9 13 13 H 1.09004 * 111.75060 * 78.23615 * 12 11 10 14 14 C 1.45032 * 126.55714 * 179.97438 * 9 7 2 15 15 H 1.08996 * 108.26267 * 263.90086 * 14 9 7 16 16 C 1.51086 * 119.18453 * 28.77943 * 14 9 7 17 17 C 1.53866 * 107.33715 * 183.88286 * 16 14 9 18 18 C 1.52724 * 111.52957 * 303.07436 * 17 16 14 19 19 N 1.45721 * 116.37544 * 207.27762 * 12 11 10 20 20 C 1.34776 * 122.23025 * 350.13296 * 19 12 11 21 21 O 1.21728 * 120.00363 * 5.96580 * 20 19 12 22 22 C 1.46415 * 119.99677 * 185.95815 * 20 19 12 23 23 C 1.35781 * 124.95672 * 207.81142 * 22 20 19 24 24 C 1.38874 * 115.18584 * 179.79046 * 23 22 20 25 25 N 1.39740 * 139.91720 * 180.08358 * 24 23 22 26 26 H 0.96999 * 125.63239 * 0.35747 * 25 24 23 27 27 C 1.36215 * 108.73446 * 180.31177 * 25 24 23 28 28 C 1.34507 * 109.29578 * 0.02562 * 27 25 24 29 29 C 1.38244 * 113.38961 * 0.41661 * 24 23 22 30 30 S 1.75620 * 124.96273 * 28.03100 * 22 20 19 31 31 H 0.96998 * 119.99456 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.27846 * 65.83897 * 10 9 7 33 33 H 1.09003 * 109.57769 * 304.64826 * 10 9 7 34 34 H 1.08998 * 110.98584 * 264.08437 * 11 10 9 35 35 H 1.09000 * 111.02195 * 140.28404 * 11 10 9 36 36 H 1.08996 * 109.88279 * 64.42526 * 16 14 9 37 37 H 1.08996 * 109.94531 * 303.37298 * 16 14 9 38 38 H 1.08999 * 109.06747 * 182.55089 * 17 16 14 39 39 H 1.08995 * 109.01789 * 63.56599 * 17 16 14 40 40 H 1.08997 * 109.15658 * 288.12726 * 18 17 16 41 41 H 1.08994 * 109.11697 * 168.91117 * 18 17 16 42 42 H 1.07994 * 122.41104 * 359.89967 * 23 22 20 43 43 H 1.07999 * 125.35272 * 179.97438 * 27 25 24 44 44 H 1.08001 * 126.07401 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1400 -2.5564 -0.0136 11 6 -0.4254 -4.0776 0.1330 12 6 0.8736 -4.5761 0.7797 13 1 0.9040 -4.3558 1.8468 14 6 1.9023 -3.7187 -0.0016 15 1 1.9365 -4.0754 -1.0310 16 6 3.2566 -3.9351 0.6323 17 6 3.6455 -5.4044 0.3929 18 6 2.5928 -6.3607 0.9496 19 7 1.2345 -5.9640 0.5208 20 6 0.3889 -6.8272 -0.0760 21 8 -0.6748 -6.4314 -0.5160 22 6 0.7499 -8.2412 -0.1953 23 6 0.3136 -9.0756 -1.1736 24 6 0.7876 -10.3785 -1.0940 25 7 0.6897 -11.5953 -1.7740 26 1 0.1703 -11.7532 -2.5779 27 6 1.4447 -12.5229 -1.1221 28 6 2.0233 -11.9516 -0.0506 29 6 1.6219 -10.5938 -0.0129 30 16 1.8059 -9.1069 0.9090 31 1 -0.4849 0.8401 0.0004 32 1 -0.5541 -2.1888 -0.9526 33 1 -0.5776 -2.0133 0.8241 34 1 -0.5796 -4.5415 -0.8412 35 1 -1.2796 -4.2539 0.7868 36 1 3.2011 -3.7360 1.7025 37 1 3.9926 -3.2769 0.1707 38 1 4.6004 -5.6039 0.8792 39 1 3.7495 -5.5742 -0.6787 40 1 2.6408 -6.3508 2.0385 41 1 2.8012 -7.3688 0.5915 42 1 -0.3527 -8.7491 -1.9583 43 1 1.5600 -13.5550 -1.4185 44 1 2.6777 -12.4411 0.6554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049866613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:40 Heat of formation + Delta-G solvation = 86.632172 kcal Electronic energy + Delta-G solvation = -28114.084377 eV Core-core repulsion = 24353.225505 eV Total energy + Delta-G solvation = -3760.858872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37925 -40.31141 -37.85521 -35.47069 -35.13826 -32.59578 -32.19032 -31.14169 -29.33446 -28.36163 -27.93209 -25.11261 -24.45456 -23.38314 -21.79507 -21.52372 -21.06273 -20.36658 -19.59970 -18.63319 -18.33992 -16.79827 -16.26205 -15.74260 -15.55692 -15.32268 -14.81300 -14.71713 -14.49314 -14.22942 -14.19609 -13.79149 -13.64301 -13.26456 -13.09853 -12.72787 -12.44071 -12.25200 -12.14673 -11.85870 -11.78186 -11.45305 -11.27738 -10.92205 -10.80908 -10.60062 -10.47672 -10.43068 -10.09211 -9.98158 -9.82506 -9.80473 -9.58489 -9.06377 -8.53892 -8.32418 -8.17636 -7.77001 -6.78490 -5.65985 -3.00510 0.47298 1.29445 1.83886 2.26408 2.45111 2.70771 3.14411 3.33703 3.43252 3.47409 3.48921 4.45739 4.53098 4.65430 4.76129 4.87507 5.03914 5.13155 5.25606 5.31709 5.40335 5.47739 5.55686 5.61913 5.66682 5.76765 5.81701 5.83910 5.91117 6.03613 6.13127 6.28239 6.29452 6.33718 6.43906 6.51045 6.59686 6.76220 6.81733 6.94400 7.14534 7.22766 7.61600 7.65500 7.72876 7.88761 8.30557 8.35792 9.24578 9.87667 10.55774 11.45659 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.028247 B = 0.002692 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.028877 B =10399.524840 C =10965.781592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.173 3.827 11 C -0.135 4.135 12 C 0.118 3.882 13 H 0.083 0.917 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.095 3.905 19 N -0.593 5.593 20 C 0.591 3.409 21 O -0.519 6.519 22 C -0.227 4.227 23 C -0.039 4.039 24 C 0.026 3.974 25 N -0.558 5.558 26 H 0.419 0.581 27 C 0.053 3.947 28 C -0.171 4.171 29 C -0.206 4.206 30 S 0.179 5.821 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.176 0.824 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 -26.104 0.191 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.173 4.173 12 C 0.014 3.986 13 H 0.101 0.899 14 C 0.048 3.952 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.164 4.164 18 C -0.029 4.029 19 N -0.325 5.325 20 C 0.378 3.622 21 O -0.397 6.397 22 C -0.347 4.347 23 C -0.075 4.075 24 C -0.088 4.088 25 N -0.159 5.159 26 H 0.256 0.744 27 C -0.081 4.081 28 C -0.201 4.201 29 C -0.327 4.327 30 S 0.443 5.557 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.165 0.835 43 H 0.193 0.807 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.266 -25.246 1.128 25.814 hybrid contribution -0.467 0.259 -1.663 1.746 sum 4.799 -24.987 -0.534 25.450 Atomic orbital electron populations 1.69944 1.04876 1.25139 1.56742 1.24809 0.95671 0.97618 1.02279 0.86224 0.78456 0.83377 0.77832 1.21243 1.21650 1.21186 1.18940 0.90317 0.82202 1.44015 0.90403 1.43877 1.01871 0.99331 1.86514 1.21587 0.83766 0.88758 1.01055 1.23069 0.94440 0.98043 1.01767 1.22373 0.99038 0.77831 0.99376 0.89911 1.20697 0.91452 0.87211 0.95802 0.96454 1.21431 0.98499 0.94118 1.01346 1.21864 0.97473 0.95441 1.01659 1.22151 0.81805 0.98970 0.99970 1.47819 1.14081 1.11470 1.59100 1.16839 0.83994 0.83045 0.78321 1.90837 1.23684 1.77320 1.47863 1.23910 1.08868 0.98599 1.03322 1.19200 0.99958 0.88686 0.99636 1.18000 1.05494 0.88618 0.96642 1.41915 1.41757 1.07026 1.25195 0.74382 1.21847 0.96485 0.94934 0.94825 1.20117 1.07444 0.91079 1.01444 1.23582 1.06840 1.00289 1.01998 1.83974 1.47080 0.95793 1.28871 0.93690 0.94426 0.92546 0.89404 0.92149 0.91666 0.91341 0.90629 0.91714 0.91056 0.89425 0.83544 0.80673 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.45 10.45 55.49 0.58 -26.87 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.28 9.94 -15.05 -0.15 -6.43 16 8 H 0.08 2.06 7.31 -52.49 -0.38 1.68 16 9 N -0.59 -15.30 3.33 -164.26 -0.55 -15.84 16 10 C 0.17 4.43 5.45 -2.17 -0.01 4.42 16 11 C -0.13 -2.92 5.12 -25.19 -0.13 -3.05 16 12 C 0.12 2.29 3.32 -67.05 -0.22 2.07 16 13 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.16 3.34 2.55 -68.60 -0.17 3.16 16 15 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 16 C -0.12 -1.99 5.45 -27.24 -0.15 -2.14 16 17 C -0.13 -1.66 5.93 -26.42 -0.16 -1.81 16 18 C 0.10 1.23 5.49 -3.44 -0.02 1.21 16 19 N -0.59 -9.78 2.92 -165.89 -0.48 -10.26 16 20 C 0.59 10.11 7.60 -12.97 -0.10 10.01 16 21 O -0.52 -10.45 13.66 5.16 0.07 -10.38 16 22 C -0.23 -3.17 5.81 -37.17 -0.22 -3.39 16 23 C -0.04 -0.50 9.97 -40.23 -0.40 -0.90 16 24 C 0.03 0.29 7.67 -84.02 -0.64 -0.36 16 25 N -0.56 -4.23 6.21 -10.90 -0.07 -4.30 16 26 H 0.42 1.92 8.96 -40.82 -0.37 1.55 16 27 C 0.05 0.34 11.85 -16.92 -0.20 0.14 16 28 C -0.17 -1.46 10.84 -39.61 -0.43 -1.89 16 29 C -0.21 -2.29 7.31 -38.29 -0.28 -2.57 16 30 S 0.18 2.02 19.37 -107.50 -2.08 -0.06 16 31 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.04 1.06 7.82 -51.93 -0.41 0.65 16 33 H 0.06 1.57 7.14 -51.93 -0.37 1.20 16 34 H 0.09 2.00 6.01 -51.93 -0.31 1.68 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 37 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.01 4.04 -25.84 -0.10 0.91 16 42 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.18 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -34.09 354.94 -11.28 -45.37 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.70 Total: 1.62 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.38 Total: -1.83 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.52 Total: -57.28 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.08 Total: -0.06 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.09 -11.28 -45.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049866613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.007 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds